Biology Faculty Articles
Submissions from 2010
Population Dynamics of Vibrio spp. Associated with Marine Sponge Microcosms, Maria Hoffman, Markus Fischer, Andrea Ottesen, Peter J. McCarthy, Jose V. Lopez, Eric W. Brown, and Steven R. Monday
Genetic Introgression and the Survival of Florida Panther Kittens, Jeffrey A. Hostetler, David P. Onorato, James D. Nichols, Warren E. Johnson, Melody E. Roelke, Stephen J. O'Brien, Deborah Jansen, and Madan K. Oli
Commentary of Off-label prescribing: a call for heightened professional and government oversight, Mark A. Jaffe
Accounting for Multiple Comparisons in a Genome-Wide Association Study (GWAS), Randall C. Johnson, George W. Nelson, Jennifer L. Troyer, J. A. Lautenberger, Bailey Kessing, Cheryl Winkler, and Stephen J. O'Brien
Genetic Restoration of the Florida Panther, Warren E. Johnson, David P. Onorato, Melody E. Roelke, E. Darrell Land, Mark W. Cunningham, Robert C. Belden, Roy McBride, Deborah Jansen, Mark Lotz, David B. Shindle, JoGayle Howard, David E. Wildt, Linda M. Penfold, Jeffrey A. Hostetler, Madan K. Oli, and Stephen J. O'Brien
Genetic Future for Florida Panthers - Response, Warren E. Johnson, David P. Onorato, Melody E. Roelke, E. Darrell Land, and Stephen J. O'Brien
Rab5 and Epidermal Growth Factor Receptor During Endocytosis by Clathrin Dependent and Clathrin Independent Pathways, Ivan Jozic and M. Alejandro Barbieri
Applying Molecular Genetic Tools to Tiger Conservation, Shu-Jin Luo, Warren E. Johnson, and Stephen J. O'Brien
Widespread Retinal Degenerative Disease Mutation (rdAc) Discovered among a Large Number of Popular Cat Breeds, Marilyn Menotti-Raymond, Victor A. David, Solveig M. Pflueger, Melody E. Roelke, J. S. Kehler, Stephen J. O'Brien, and Kristina Narfstrom
Mutation Discovered in a Feline Model of Human Congenital Retinal Blinding Disease, Marilyn Menotti-Raymond, Koren Holland Deckman, Victor David, Jaimie Myrkalo, Stephen J. O'Brien, and Kristina Narfstrom
Light Whole Genome Sequence for SNP Discovery Across Domestic Cat Breeds, James C. Mullikin, Nancy F. Hansen, Lei Shen, Heather Ebling, William F. Donahue, Wei Tao, David J. Saranga, Adrianne Brand, Marc J. Rubenfield, Alice C. Young, Pedro Cruz, Carlos Driscoll, Victor David, Samer W. K. Al-Murrani, Mary F. Locniskar, Mitchell S. Abrahamsen, Stephen J. O'Brien, Douglas R. Smith, and Jeffrey A. Brockman
Genome-Wide Scans for Footprints of Natural Selection, T. K. Oleksyk, Michael W. Smith, and Stephen J. O'Brien
Genome Sequence of the Palaeopolyploid Soybean, Jeremy Schmutz, Steven B. Cannon, Jessica Schlueter, Jianxin Ma, Therese Mitros, William Nelson, David L. Hyten, Qijian Song, Jay J. Thelen, Jianlin Cheng, Dong Xu, Uffe Hellsten, Gregory D. May, Yeisoo Yu, Tetsuya Sakurai, Taishi Umezawa, Madan K. Bhattacharyya, Devinder Sandhu, Babu Valliyodan, Erika Lindquist, Myron Peto, David Grant, Shengqiang Shu, David Goodstein, Kerrie Barry, Montona Futrell-Griggs, Brian Abernathy, Jianchang Du, Zhixi Tian, Liucun Zhu, Navdeep Gill, Trupti Joshi, Marc Libault, Anand Sethuraman, Xue-Cheng Zhang, Kazuo Shinozaki, Henry T. Nguyen, Rod A. Wing, Perry Cregan, James Specht, Jane Grimwood, Dan Rokhsar, Gary Stacey, Randy C. Shoemaker, and Scott A. Jackson
Examination of Disease-Based Selection, Demographic History and Population Structure in European Y-Chromosome Haplogroup I, Efe Sezgin, Alyssa Drosdak, Carl McIntosh, Bailey Kessing, J. A. Lautenberger, James J. Goedert, John Phair, Jennifer L. Troyer, Michael W. Smith, and Stephen J. O'Brien
Effect of Host Genetics on Incidence of HIV Neuroretinal Disorder in Patients with AIDS, Efe Sezgin, Sher L. Hendrickson, Douglas A. Jabs, Mark Van Natta, Richard A. Lewis, Jennifer L. Troyer, Stephen J. O'Brien, and SOCA Research Group
Effect of Host Genetics on the Development of Cytomegalovirus Retinitis in Patients with AIDS, Efe Sezgin, Douglas A. Jabs, Sher L. Hendrickson, Mark Van Natta, Alexander Zdanov, Richard A. Lewis, Michael W. Smith, Jennifer L. Troyer, Stephen J. O'Brien, and SOCA Research Group
Haplotype-Dependent HLA Susceptibility to Nasopharyngeal Carcinoma in a Southern Chinese Population, M. Tang, Yi Zeng, A. Poisson, D. Marti, Li Guan, Yuming Zheng, Hong Deng, Jian Liao, Xiuchan Guo, S. Sun, G. Nelson, Guy de The, Cheryl Winkler, Stephen J. O'Brien, Mary Carrington, and Xiaojiang Gao
The Larval, Juvenile, and Adult Stages of the Caribbean Goby, Coryphopterus kuna (Teleostei: Gobiidae): A Reef Fish with a Pelagic Larval Duration Longer Than the Post-Settlement Lifespan, Benjamin C. Victor, Lourdes Vasquez-Yeomans, Martha Valdez-Moreno, Leslie Wilk, David L. Jones, Monica R. Lara, Chris Caldow, and Mahmood S. Shivji
Submissions from 2009
Unsung Hero Robert C. Gallo, Giovanni Abbadessa, Roberto Accolla, Fernando Aiuti, Adriana Albini, Anna Aldovini, Massimo Alfano, Guido Antonelli, Courtenay Bartholomew, Zvi Bentwich, Umberto Bertazzoni, Jay A. Berzofsky, Peter Biberfeld, Enzo Boeri, Luigi Buonaguro, Franco M. Buonaguro, Michael Bukrinsky, Arsene Burny, Arnaldo Caruso, Sharon Cassol, Prakash Chandra, Luca Ceccherini-Nelli, Luigi Chieco-Bianchi, Mario Clerici, Sandra Colombini-Hatch, Carlo de Giuli Morghen, Andrea de Maria, Anita de Rossi, Manfred Dierich, Riccardo Della-Favera, Antonina Dolei, Daniel Douek, Volker Erfle, Barbara Felber, Simona Fiorentini, Genoveffa Franchini, Jonathan M. Gershoni, Frances Gotch, Patrick Green, Warner C. Greene, William Hall, William Haseltine, Stephens Jacobson, Lars O. Kallings, Vaniambadi S. Kalyanaraman, Hermann Katinger, Kamel Khalili, George Klein, Eva Klein, Mary Klotman, Paul Klotman, Moshe Kotler, Reinhard Kurth, Alain Lafeuillade, Michelangelo La Placa, Jonathan Lewis, Flavia Lillo, Julianna Lisziewicz, Anita Lomonico, Lucia Lopalco, Franco Lori, Paolo Lusso, Beatrice Macchi, Michael Malim, Leonid Margolis, Phillip D. Markham, Myra McClure, Nancy Miller, Maria C. Mingari, Lorenzo Moretta, Douglas Noonan, Stephen J. O'Brien, Takashi Okamoto, Ranajit Pal, Peter Palese, Amos Panet, Giuseppe Pantaleo, George Pavlakis, Mauro Pistello, Stanley Plotkin, Guido Poli, Roger Pomerantz, Antonia Radaelli, Marjorie Robert-Guroff, Mario Roederer, Mangalasseril G. Sarngadharan, Dominique Schols, Paola Secchiero, Gene M. Shearer, Antonio Siccardi, Mario Stevenson, Jan Svoboda, Jim Tartaglia, Giuseppe Torelli, Maria L. Tornesello, Erwin Tschachler, Mauro Vaccarezza, Angelika Vallbracht, Jan van Lunzen, Oliviero Varnier, Elisa Vicenzi, Harald von Melchner, Isaac Witz, Daniel Zagury, Jean-Francois Zagury, Giorgio Zauli, and Donaldo Zipeto
A BAC-based Physical Map of the Hessian Fly Genome Anchored to Polytene Chromosomes, Rajat Aggarwal, Thiago R. Benatti, Navdeep Gill, Chaoyang Zhao, Ming-Shun Chen, John P. Fellers, Brandon J. Schemerhorn, and Jeff J. Stuart
A Unique Vascular Configuration among the Efferent Branchial Arteries and Splanchnic Arteries in the Yellow Stingray, Urobatis jamaicensis, Bethany L. Basten, Robin L. Sherman, Alois Lametschwandtner, and Richard E. Spieler
Effects of Species Misidentification on Population Assessment of Overfished White Marlin Tetrapturus albidus and Roundscale Spearfish T. georgii, Lawrence R. Beerkircher, Freddy Arocha, Ann Barse, Eric D. Prince, Victor Restrepo, Joseph Serafy, and Mahmood S. Shivji
Optical torques guiding cell motility, G. Biener, Emmanuel George Vrotsos, K. Sugaya, and A. Dogariu
Pollution and parasitism in aquatic animals: a meta-analysis of effect size, Christopher A. Blanar, D. L. MacLatchy, J. Houlahan, and K. R. Munkittrick
Genetics and Pathogenesis of Feline Infectious Peritonitis Virus, Meredith Brown, Jennifer L. Troyer, Jill Pecon-Slattery, M. Roelke-Parker, and Stephen J. O'Brien
The Taming of the Cat, Carlos A. Driscoll, Juliet Clutton-Brock, Andrew C. Kitchener, and Stephen J. O'Brien
From Wild Animals to Domestic Pets, an Evolutionary View of Domestication, Carlos A. Driscoll, David W. Macdonald, and Stephen J. O'Brien
Mitochondrial Phylogeography Illuminates the Origin of the Extinct Caspian Tiger and Its Relationship to the Amur Tiger, Carlos A. Driscoll, Nobuyuki Yamaguchi, Gila Kahila Bar-Gal, Alfred L. Roca, Shu-Jin Luo, David W. Macdonald, and Stephen J. O'Brien
Journal club, Omar Tonsi Eldakar
Journal Club: An Evolutionary Biologist Learns How To Be Remembered: Cheat Someone, Omar Tonsi Eldakar
Population Structure Mediates Sexual Conflict in Water Striders, Omar Tonsi Eldakar, Michael J. Dlugos, John W. Pepper, and David Sloan Wilson
Aggressive Mating as a Tragedy of the Commons in the Water Strider Aquarius remigis, Omar Tonsi Eldakar, Michael J. Dlugos, R. Stimson Wilcox, and David Sloan Wilson
Common Genetic Variation and the Control of HIV-1 in Humans, Jacques Fellay, Dongliang Ge, Kevin V. Shianna, Sara Colombo, Bruno Ledergerber, Elizabeth T. Cirulli, Thomas J. Urban, Kunlin Zhang, Curtis Gumbs, Jason P. Smith, Antonella Castagna, Alessandro Cozzi-Lepri, Andrea de Luca, Philippa Easterbrook, Huldrych F. Gunthard, Simon Mallal, Cristina Mussini, Judith Dalmau, Javier Martinez-Picado, Jose M. Miro, Niels Obel, Steven M. Wolinsky, Jeremy J. Martinson, Roger Detels, Joseph Margolick, Lisa Jacobson, Patrick Descombes, Stylianos E. Antonarakis, Jacques S. Beckmann, Stephen J. O'Brien, Norman L. Letvin, Andrew J. McMichael, Barton F. Haynes, Mary Carrington, Sheng Feng, Amalio Telenti, David B. Goldstein, and NIAID Center for HIV/AIDS Vaccine Immunology (CHAVI)
A Lineage-specific Centromere Retrotransposon in Oryza brachyantha, Dongying Gao, Navdeep Gill, Hye-Ran Kim, Jason G. Walling, Wenli Zhang, Chuanzhu Fan, Yeisoo Yu, Jianxin Ma, Phillip SanMiguel, Ning Jiang, Zhukuan Cheng, Rod A. Wing, Jiming Jiang, and Scott A. Jackson
Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10,000 Vertebrate Species, Genome 10K Community of Scientists and Stephen J. O'Brien
Molecular and Chromosomal Evidence for Allopolyploidy in Soybean, Navdeep Gill, Seth Findley, Jason G. Walling, Christian Hans, Jianxin Ma, Jeff Doyle, Gary Stacey, and Scott A. Jackson
Evaluation of Nonviral Risk Factors for Nasopharyngeal Carcinoma in a High-Risk Population of Southern China, Xiuchan Guo, Randall C. Johnson, Hong Deng, Jian Liao, Li Guan, George W. Nelson, Mingzhong Tang, Yuming Zheng, Guy de The, Stephen J. O'Brien, Cheryl Winkler, and Yi Zeng
Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species, David Haussler, Stephen J. O'Brien, Oliver A. Ryder, F. Keith Barker, Michele Clamp, Andrew J. Crawford, Robert Hanner, Olivier Hanotte, Warren E. Johnson, Jimmy A. McGuire, Webb Miller, Robert W. Murphy, William J. Murphy, Frederick H. Sheldon, Barry Sinervo, Byrappa Venkatesh, Edward O. Wiley, Fred W. Allendorf, George Amato, C. Scott Baker, Aaron Bauer, Albano Beja-Pereira, Eldredge Bermingham, Giacomo Bernardi, Cibele R. Bonvicino, Sydney Brenner, Terry Burke, Joel Cracraft, and Mark Diekhans
Mitochondrial DNA Haplogroups Influence Lipoatrophy After Highly Active Antiretroviral Therapy, Sher L. Hendrickson, Lawrence Kingsley, Eduardo Ruiz-Pesini, Jason C. Poole, Lisa Jacobson, Frank J. Pallela, Jay Bream, Douglas C. Wallace, and Stephen J. O'Brien
Camelid Genomics: Anticipating the Future, Warren E. Johnson, Polina L. Perelman, and Stephen J. O'Brien
Guidelines for Naming Nonprimate APOBEC3 Genes and Proteins, Rebecca S. LaRue, Valgerdur Andresdottir, Yannick Blanchard, Silvestro G. Conticello, David Derse, Michael Emerman, Warner C. Greene, Stefan R. Jonsson, Nathaniel R. Landau, Martin Lochelt, Harmit S. Malik, Michael H. Malim, Carsten Munk, Stephen J. O'Brien, Vinay K. Pathak, Klaus Strebel, Simon Wain-Hobson, Xiao-Fang Yu, Naoya Yuhki, and Reuben S. Harris
Every Genome Sequence Needs a Good Map, Harris A. Lewin, Denis M. Larkin, J. U. Pontius, and Stephen J. O'Brien
Analyses of Sweet Receptor Gene (Tas1r2) and Preference for Sweet Stimuli in Species of Carnivora, Xia Li, Dieter Glaser, Weihua Li, Warren E. Johnson, Stephen J. O'Brien, Gary K. Beauchamp, and Joseph G. Brand
A Preliminary Comparison of the Vasculature of the Spiral Valve in the Yellow Stingray, Urobatis jamaicensis, and the North American Paddlefish, Polyodon spathula, K. M. Maroni, R. E. Spieler, and Robin L. Sherman
Mapping of the Domestic Cat ‘‘SILVER’’ Coat Color Locus Identifies a Unique Genomic Location for Silver in Mammals, Marilyn Menotti-Raymond, Victor A. David, Eduardo Eizirik, Melody E. Roelke, Helya Ghaffari, and Stephen J. O'Brien
An Autosomal Genetic Linkage Map of the Domestic Cat, Felis silvestris catus, Marilyn Menotti-Raymond, Victor A. David, Alejandro A. Schaffer, James F. Tomlin, Eduardo Eizirik, Cornel Phillip, David Wells, J. U. Pontius, Steven S. Hannah, and Stephen J. O'Brien
Retinal Degeneration in the Abyssinian and Somali Cat (rdAc): Correlation between Genotype and Phenotype and rdAc Allele Frequency in Two Continents, Kristina Narfstrom, Victor David, Oswald Jarret, Julia A. Beatty, Vanessa R. Barrs, David Wilkie, Stephen J. O'Brien, and Marilyn Menotti-Raymond
Comparative Genomics in Vertebrates: a Role for the Platypus, Stephen J. O'Brien
Stewardship of Human Biospecimens, DNA, Genotype, and Clinical Data in the GWAS Era, Stephen J. O'Brien
Extended IL10 Haplotypes and their Association with HIV Progression to AIDS, T. K. Oleksyk, Sadeep Shrestha, Ann L. Truelove, James J. Goedert, Sharyne Donfield, John Phair, Shruti Mehta, Stephen J. O'Brien, and M. W. Smith
A Low-Cost, High-Throughput, Automated Single Nucleotide Polymorphism Assay for Forensic Human DNA Applications, Robert S. Pomeroy, George Duncan, Bulbin Sunar-Reeder, Elen Ortenberg, Melba Ketchum, Hannah Wasiluk, and Dennis Reeder
Artifacts of the 1.93 Feline Genome Assembly Derived from the Feline- Specific Satellite Sequence, J. U. Pontius and Stephen J. O'Brien
A New Prokaryotic Farnesyldiphosphate Synthase from the Octocoral Eunicea fusca: Differential Display, Inverse PCR, Cloning, and Characterization, Llanie K. Ranzer, Thomas B. Bruck, Wolfram M. Brück, Jose V. Lopez, and Russell G. Kerr
Pathological Manifestations of Feline Immunodeficiency Virus (FIV) Infection in Wild African Lions, Melody E. Roelke, Meredith Brown, Jennifer L. Troyer, Hanlie Winterbach, Christiaan Winterbach, Graham Hemson, Dahlem Smith, Randall C. Johnson, Jill Pecon-Slattery, Alfred L. Roca, Kathleen A. Alexander, Lin Klein, Paolo Martelli, Karthiyani Krishnasamy, and Stephen J. O'Brien
Molecular Genetic Evidence for Social Group Disruption of Wild Vicuñas Vicugna vicugna Captured for Wool Harvest in Chile, Ronald J. Sarno, Benito A. Gonzalez, Cristian Bonacic, Beatriz Zapata, Stephen J. O'Brien, and Warren E. Johnson
A Domestic Cat X Chromosome Linkage Map and the Sex-Linked orange Locus: Mapping of orange, Multiple Origins and Epistasis Over nonagouti, A. Schmidt-Kunzel, George Nelson, Victor A. David, Alejandro A. Schaffer, Eduardo Eizirik, M. Roelke-Parker, J. S. Kehler, Steven S. Hannah, Stephen J. O'Brien, and Marilyn Menotti-Raymond
Association of Y Chromosome Haplogroup I with HIV Progression, and HAART Outcome, Efe Sezgin, Joanne M. Lind, Sadeep Shrestha, Sher L. Hendrickson, James J. Goedert, Sharyne Donfield, Gregory D. Kirk, John Phair, Jennifer L. Troyer, Stephen J. O'Brien, and Michael W. Smith
Theobroma Cacao L. (Malvaceae) Agroecology in Kauai: A Case Study, Genevieve K. Smith, Eben Gering, Rafael F. Guerrero, Emily Jane McTavish, and Tony Lydgate
Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes, Aurelien Tartar, M. Wheeler, X. Zhou, M. R. Coy, Drion G. Boucias, and M. E. Scharf
CCL3L1 and HIV/AIDS Susceptibility, Thomas J. Urban, Amy C. Weintrob, Jacques Fellay, Sara Colombo, Kevin V. Shianna, Curtis Gumbs, Margalida Rotger, Kimberly Pelak, Kristen K. Dang, Roger Detels, Jeremy J. Martinson, Stephen J. O'Brien, Norman L. Letvin, Andrew J. McMichael, Barton F. Haynes, Mary Carrington, Amalio Telenti, Nelson L. Michael, and David B. Goldstein
Identification of the Larval and Juvenile Stages of the Cubera Snapper, Lutjanus cyanopterus, Using DNA Barcoding, Benjamin C. Victor, Robert H. Hanner, Mahmood S. Shivji, John Hyde, and Chris Caldow
MCP-1 involvement in glial differentiation of neuroprogenitor cells through APP signaling, Emmanuel George Vrotsos, Pappachan E. Kallutakudy, and Kiminobu Sugaya
MCP-1 induced migration of NT2 neuroprogenitor cells involving APP signaling, Emmanuel George Vrotsos and Kiminobu Sugaya
Identifying Sharks With DNA Barcodes: Assessing the Utility of a Nucleotide Diagnostic Approach, Eugene H.-K. Wong
Submissions from 2008
The Evolutionary Dynamics of the Lion Panthera leo Revealed by Host and Viral Population Genomics, Agostinho Antunes, Jennifer L. Troyer, Melody E. Roelke, Jill Pecon-Slattery, Craig Packer, Christiaan Winterbach, Graham Hemson, Laurence G. Frank, Philip Stander, Ludwig Siefert, Margaret Driciru, Paul J. Funston, Kathy A. Alexander, Katherine C. Prager, Gus Mills, David E. Wildt, Mitch E. Bush, Stephen J. O'Brien, and Warren E. Johnson
Genetic Characterization of Feline Leukemia Virus from Florida Panthers, Meredith Brown, Mark W. Cunningham, Alfred L. Roca, Jennifer L. Troyer, Warren E. Johnson, and Stephen J. O'Brien
Use of Real-Time qPCR to Quantify Members of the Unculturable Heterotrophic Bacterial Community in a Deep Sea Marine Sponge, Vetulina sp., M. Cassler, C. L. Peterson, A. Ledger, Shirley A. Pomponi, A. E. Wright, R. Winegar, P. J. McCarthy, and Jose V. Lopez
Parthenogenesis in a Large-Bodied Requiem Shark, the Blacktip Carcharhinus limbatus, Demian D. Chapman, B. Firchau, and Mahmood S. Shivji
Estimation of the Bottleneck Size in Florida Panthers, Melanie Culver, P. W. Hendrick, K. Murphy, Stephen J. O'Brien, and M. G. Hornocker
Epizootiology and Management of Feline Leukemia Virus in the Florida Puma, Mark W. Cunningham, Meredith Brown, David B. Shindle, Scott P. Terrell, Kathleen A. Hayes, Bambi C. Ferree, R. T. McBride, Emmett L. Blankenship, Deborah Jansen, S. Citino, Melody E. Roelke, Richard A. Kiltie, Jennifer L. Troyer, and Stephen J. O'Brien
The Adaptive Evolution of the Mammalian Mitochondrial Genome, Rute R. da Fonseca, Warren E. Johnson, Stephen J. O'Brien, Maria J. Ramos, and Agostinho Antunes
Molecular Taxonomy: An Approach Based on Molecular Markers, Santanu De and Subhendu Bandyopadhyay
Selfishness as Second-Order Altruism, Omar Tonsi Eldakar and David Sloan Wilson
Estrogen-induced redox sensitive Id3 signaling controls the growth of vascular cell, Quentin Felty and Nicole Porther
Molecular Evolution of Cytochrome b in High- and Low-Altitude Deer Mice (Genus Peromyscus), Eben Gering, J. C. Opazo, and J. F. Storz
An Overview of Plant Chromosome Structure, Navdeep Gill, C. S. Hans, and S. Jackson
Phylogenomics of the Dog and Fox Family (Canidae, Carnivora) Revealed by Chromosome Painting, A. S. Graphodatsky, Polina L. Perelman, Natalya V. Sokolovskaya, Violetta R. Beklemisheva, Natalya V. Serdukova, Gauthier Dobigny, Stephen J. O'Brien, Malcolm A. Ferguson-Smith, and Fengtang Yang
GSTM1 and GSTT1 Gene Deletions and the Risk for Nasopharyngeal Carcinoma in Han Chinese, Xiuchan Guo, Stephen J. O'Brien, Yi Zeng, and Cheryl Winkler
Mitochondrial DNA Haplogroups Influence AIDS Progression, Sher L. Hendrickson, Holli Hutcheson, Eduardo Ruiz-Pesini, Jason C. Poole, J. A. Lautenberger, Efe Sezgin, Lawrence Kingsley, James J. Goedert, David Vlahov, Sharyne Donfield, Douglas C. Wallace, and Stephen J. O'Brien
Host Genetic Influences on Highly Active Antiretroviral Therapy Efficacy and AIDS-Free Survival, Sher L. Hendrickson, Lisa Jacobson, George W. Nelson, John Phair, J. A. Lautenberger, Randall C. Johnson, Lawrence Kingsley, Joseph Margolick, Roger Detels, James J. Goedert, and Stephen J. O'Brien
Detecting AIDS Restriction Genes: from Candidate Genes to Genome-Wide Association Discovery, Holli Hutcheson, J. A. Lautenberger, G. W. Nelson, J. U. Pontius, Bailey Kessing, Cheryl Winkler, M. W. Smith, R. Johnson, R. Stephens, John Phair, James J. Goedert, Sharyne Donfield, and Stephen J. O'Brien
Construction, Alignment and Analysis of Twelve Framework Physical Maps that Represent the Ten Genome Types of the Genus Oryza, HyeRan Kim, Bonnie Hurwitz, Yeisoo Yu, Kristi Collura, Navdeep Gill, Phillip SanMiguel, James C. Mullikin, Christopher Maher, William Nelson, Marina Wissotski, Michele Braidotti, David Kudrna, José Luis Goicoechea, Lincoln Stein, Doreen Ware, Scott A. Jackson, Carol Soderlund, and Rod A. Wing
Mitochondrial Genomes Reveal an Explosive Radiation of Extinct and Extant Bears near the Miocene-Pliocene Boundary, Johannes Krause, Tina Unger, Aline Nocon, Anna-Sapfo Malaspinas, Sergios-Orestis Kolokotronis, Mathias Stiller, Leopoldo Soibelzon, Helen Spriggs, Paul H. Dear, Adrian W. Briggs, Sarah C. E. Bray, Stephen J. O'Brien, Gernot Rabeder, Paul Matheus, Alan Cooper, Montgomery Slatkin, Svante Paabo, and Michael Hofreiter
Subspecies Genetic Assignments of Worldwide Captive Tigers Increase Conservation Value of Captive Populations, Shu-Jin Luo, Warren E. Johnson, Janice S. Martenson, Agostinho Antunes, Paolo Martelli, Olga Uphyrkina, Kathy Traylor-Holzer, James L. D. Smith, and Stephen J. O'Brien
Molecular Genetic Insights on Cheetah (Acinonyx jubatus) Ecology and Conservation in Namibia, L. Marker, A. J. Pearks Wilkerson, Ronald J. Sarno, Janice S. Martenson, Christian Breitenmoser-Wursten, Stephen J. O'Brien, and Warren E. Johnson
Patterns of Molecular Genetic Variation Among Cat Breeds, Marilyn Menotti-Raymond, Victor A. David, Solveig M. Pflueger, Kerstin Lindblad-Toh, Claire M. Wade, Stephen J. O'Brien, and Warren E. Johnson
Functions, Structure, and Read-Through Alternative Splicing of Feline APOBEC3 Genes, Carsten Munk, Thomas W. Beck, Jorg Zielonka, Agnes Hotz-Wagenblatt, Sarah Chareza, Marion Battenberg, Jens Thielebein, Klaus Cichutek, Ignacio G. Bravo, Stephen J. O'Brien, Martin Lochelt, and Naoya Yuhki
Ecological and Biogeographical Inferences on Two Sympatric and Enigmatic Andean Cat Species Using Genetic Identification of Faecal Samples, Constanza Napolitano, Magdalena Bennett, Warren E. Johnson, Stephen J. O'Brien, Pablo A. Marquet, Ivan Barria, Elie Poulin, and Agustin Iriarte
The Ancestral Carnivore Karyotype (2n = 38) Lives Today in Ringtails, William G. Nash, Joan C. Menninger, Hesed M. Padilla-Nash, Gary Stone, Polina L. Perelman, and Stephen J. O'Brien
The Platypus Genome Unraveled, Stephen J. O'Brien
State of Cat Genomics, Stephen J. O'Brien, Warren E. Johnson, Carlos A. Driscoll, J. U. Pontius, Jill Pecon-Slattery, and Marilyn Menotti-Raymond
Identifying Selected Regions from Heterozygosity and Divergence Using a Light-Coverage Genomic Dataset from Two Human Populations, T. K. Oleksyk, Kai Zhao, Francisco M. De La Vega, Dennis A. Gilbert, Stephen J. O'Brien, and Michael W. Smith
Genomic Organization, Sequence Divergence, and Recombination of Feline Immunodeficiency Virus from Lions in the Wild, Jill Pecon-Slattery, Carrie L. McCracken, Jennifer L. Troyer, Sue VandeWoude, Melody E. Roelke, Kerry Sondgeroth, Christiaan Winterbach, and Stephen J. O'Brien
Evolution of Feline Immunodeficiency Virus in Felidae: Implications for Human Health and Wildlife Ecology, Jill Pecon-Slattery, Jennifer L. Troyer, Warren E. Johnson, and Stephen J. O'Brien
Chromosome Painting Shows That Skunks (Mephitidae, Carnivora) Have Highly Rearranged Karyotypes, Polina L. Perelman, A. S. Graphodatsky, J. W. Dragoo, N. A. Serdyukova, Gary Stone, P. Cavagna, Marilyn Menotti-Raymond, W. Nie, P. C. M. O'Brien, J. Wang, S. Burkett, K. Yuki, Melody E. Roelke, Stephen J. O'Brien, F. Yang, and R. Stanyon
NFAR-1 and -2 modulate translation and are required for efficient host defense, Ingrid Pfeifer, Rachel Elsby, Marilyn Fernandez, Paula A. Faria Waziry, Daniel R. Nussenzveig, Izidor S. Lossos, Beatriz M. A. Fontoura, W. David Martin, and Glen N. Barber
Exposure to Disease Agents in the Endangered Iberian Lynx (Lynx pardinus), Melody E. Roelke, Warren E. Johnson, Javier Millan, Francisco Palomares, Eloy Revilla, Alejandro Rodriguez, Javier Calzada, Pablo Ferreras, Luis Leon-Vizcaino, Miguel Delibes, and Stephen J. O'Brien
Termite digestomes as sources for novel lignocellulases, M. E. Scharf and Aurelien Tartar
BAC-end Sequence Analysis and a Draft Physical Map of the Common Bean (Phaseolus vulgaris L.) Genome, Jessica A. Schlueter, Jose Luis Goicoechea, Kristi Collura, Navdeep Gill, Jer-Young Lin, Yeisoo Yu, Dave Kudrna, Andrea Zuccolo, C. Eduardo Vallejos, Monica Muñoz-Torres, Matthew W. Blair, Joe Tohme, Jeff Tomkins, Phillip McClean, Rod A. Wing, and Scott A. Jackson
Characterization of the Pelagic Shark-Fin Trade in North-Central Chile by Genetic Identification and Trader Surveys, H. Sebastian, P. A. Haye, and Mahmood S. Shivji