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Biology Faculty Articles
Document Type
Article
Publication Date
2-28-2008
Publication Title
Genome Biology
Keywords
Bacterial Artificial Chromosome, Additional Data File, Bacterial Artificial Chromosome Library, Single Nucleotide Variation, Genome Type
ISSN
1474-760X
Volume
9
First Page
R45
Abstract
We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the 10 genome types of Oryza aligned to the O. sativa ssp. japonica reference genome sequence. Over 932 Mb of end sequence was analyzed for repeats, simple sequence repeats, miRNA and single nucleotide variations, providing the most extensive analysis of Oryza sequence to date.
Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 International License.
NSUWorks Citation
Kim, HyeRan; Bonnie Hurwitz; Yeisoo Yu; Kristi Collura; Navdeep Gill; Phillip SanMiguel; James C. Mullikin; Christopher Maher; William Nelson; Marina Wissotski; Michele Braidotti; David Kudrna; José Luis Goicoechea; Lincoln Stein; Doreen Ware; Scott A. Jackson; Carol Soderlund; and Rod A. Wing. 2008. "Construction, Alignment and Analysis of Twelve Framework Physical Maps that Represent the Ten Genome Types of the Genus Oryza." Genome Biology 9, (): R45. doi:10.1186/gb-2008-9-2-r45.
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ORCID ID
http://orcid.org/0000-0003-3746-1866
DOI
10.1186/gb-2008-9-2-r45
Comments
© 2008 Kim et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.