Biology Faculty Articles
Submissions from 2015
SmileFinder: A Resampling-Based Approach to Evaluate Signatures of Selection from Genome-Wide Sets of Matching Allele Frequency Data in Two or More Diploid Populations, Wilfred M. Guiblet, Kai Zhao, Stephen J. O'Brien, Steven E. Massey, Alfred L. Roca, and T. K. Oleksyk
Integrated whole transcriptome and DNA methylation analysis identifies gene networks specific to late-onset Alzheimer’s disease, C. E. Humphries, M. A. Kohli, Lubov Nathanson, P. Whitehead, G. Beecham, E. Martin, D. C. Mash, M. A. Pericak-Vance, and J. Gilbert
Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND), Sudha K. Iyengar, John R. Sedor, Barry I. Freedman, W. H. Linda Kao, Matthias Kretzler, Benjamin J. Keller, Hanna E. Abboud, Sharon G. Adler, Lyle G. Best, Donald W. Bowden, Allison Burlock, Yii-Der Ida Chen, Shelley A. Cole, Mary E. Comeau, Jeffrey M. Curtis, Jasmin DIvers, Christiane Drechsler, Ravi Duggirala, Robert C. Elston, Xiuqing Guo, Huateng Huang, Michael M. Hoffmann, Barbara V. Howard, Eli Ipp, Paul L. Kimmel, Michael J. Klag, William C. Knowler, Orly F. Kohn, Tennille S. Leak, David J. Leehey, Man Li, Alka Malhotra, Winfried Marz, Viji Nair, Robert G. Nelson, Susanne B. Nicholas, Stephen J. O'Brien, Madeleine V. Pahl, Rulan S. Parekh, Marcus G. Pezzolesi, Rebekah S. Rasooly, Charles N. Rotimi, Jerome I. Rotter, Jeffrey R. Schelling, Michael F. Seldin, Vallabh O. Shah, Adam M. Smiles, Michael W. Smith, Kent D. Taylor, Farook Thameem, Denyse P. Thornley-Brown, Barbara J. Truitt, Christoph Wanner, E. Jennifer Weil, Cheryl Winkler, Philip G. Zager, Robert P. Igo Jr., Robert L. Hanson, Carl D. Langefeld, and Family Investigation of Nephropathy and Diabetes (FIND) Research Group
The Trade in Sharks and Their Products in the United Arab Emirates, Rima W. Jabado, Saif M. Al Ghais, Waleed Hamza, Aaron C. Henderson, Julia L. Y. Spaet, Mahmood S. Shivji, and Robert H. Hanner
Shark Diversity in the Arabian/Persian Gulf Higher Than Previously Thought: Insights Based on Species Composition of Shark Landings in the United Arab Emirates, Rima W. Jabado, Saif M. Al Ghais, Waleed Hamza, Mahmood S. Shivji, and Aaron C. Henderson
Nanoparticles for Fidgety Cell Movement and Enhanced Wound Healing, Ivan Jozic, Sylvia Daunert, Marjana Tomic-Canic, and Irena Pastar
Skin under the (Spot)-Light: Cross-Talk with the Central Hypothalamic-Pituitary-Adrenal (HPA) Axis, Ivan Jozic, Olivera Stojadinovic, Robert S. F. Kirsner, and Marjana Tomic-Canic
Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida, Imran Khan, Zhikai Yang, Emanuel Maldonado, Cai Li, Guojie Zhang, M. Thomas P. Gilbert, Erich D. Jarvis, Stephen J. O'Brien, Warren E. Johnson, and Agostinho Antunes
Toll-Like Receptor 9-Mediated Inflammation Triggers Alveolar Bone Loss in Experimental Murine Periodontitis, Paul D. Kim, Xia Xia-Juan, Katie E. Crump, Toshiharu Abe, George Hajishengallis, and Sinem E. Sahingur
The Genome 10K Project: A Way Forward, Klaus-Peter Koepfli, Benedict Paten, The Genome 10K Community of Scientists, and Stephen J. O'Brien
Genome-Wide Evidence Reveals that African and Eurasian Golden Jackals are Distinct Species, Klaus-Peter Koepfli, John Pollinger, Raquel Godinho, Jacqueline Robinson, Amanda Lea, Sarah Hendricks, Rena M. Schweizer, Olaf Thalmann, Pedro Salva, Zhenxin Fan, Andrey A. Yurchenko, Pavel Dobrynin, Alexey Makunin, James A. Cahill, Beth Shapiro, Francisco Alvares, Jose C. Brito, Eli Geffen, Jennifer A. Leonard, Kristofer M. Helgen, Warren E. Johnson, Stephen J. O'Brien, Blaire Van Valkenburgh, and Robert K. Wayne
Subsistence strategies in traditional societies distinguish gut microbiomes, Alexandra J. Obregon-Tito, Raul Y. Tito, Jessica Metcalf, Krithivasan Sankaranarayanan, Jose C. Clemente, Luke K. Ursell, Zhenjiang Zech Xu, Will Van Treuren, Rob Knight, Patrick M. Gaffney, Paul Spicer, Paul Lawson, Luis Marin-Reyes, Omar Trujillo-Villarroel, Morris Foster, Emilio Guija-Poma, Luzmila Troncoso-Corzo, Christina Warinner, Andrew T. Ozga, and Cecil M. Lewis Jr.
Genetic Diversity of White Sharks, Carcharodon carcharias, in the Northwest Atlantic and Southern Africa, Shannon J. O'Leary, Kevin A. Feldheim, Andrew T. Fields, Lisa Natanson, Sabine Wintner, Nigel Hussey, Mahmood S. Shivji, and Demian D. Chapman
Putting Russia on the Genome Map, T. K. Oleksyk, Vladimir Brukhin, and Stephen J. O'Brien
The Genome Russia Project: Closing the Largest Remaining Omission on the World Genome Map, T. K. Oleksyk, Vladimir Brukhin, and Stephen J. O'Brien
Clostridium amazonense sp. nov. an obliqately anaerobic bacterium isolated from a remote Amazonian community in Peru, Lindsey O'Neal, Alexandra J. Obregon-Tito, Raul Y. Tito, Andrew T. Ozga, Susan I. Polo, Cecil M. Lewis Jr., and Paul Lawson
Origins of an Unmarked Georgia Cemetery Using Ancient DNA Analysis, Andrew T. Ozga, Raul Y. Tito, Brian M. Kemp, Hugh Matternes, Alexandra J. Obregon-Tito, Leslie Neal, and Cecil M. Lewis Jr.
The role of endocytic Rab GTPases in regulation of growth factor signaling and the migration and invasion of tumor cells, Nicole Porther and M. Alejandro Barbieri
Gut Microbiome Diversity among Cheyenne and Arapaho Individuals from Western Oklahoma, Krithivasan Sankaranarayanan, Andrew T. Ozga, Christina Warinner, Raul Y. Tito, Alexandra J. Obregon-Tito, Jiawu Xu, Patrick M. Gaffney, Lori L. Jervis, Derrell Cox, Lancer Stephens, Morris Foster, Gloria Tallbull, Paul Spicer, and Cecil M. Lewis Jr.
The Grilled Cheese Principle. Personal Belief Essay as part of a public dialog about belief, Emily F. Schmitt Lavin
Recurrent Evolution of Melanism in South American Felids, Alexsandra Schneider, Corneliu Henegar, Kenneth Day, Devin Absher, Constanza Napolitano, Leandro Silveira, Victor A. David, Stephen J. O'Brien, Marilyn Menotti-Raymond, Gregory S. Barsh, and Eduardo Eizirik
Evaluation of DNA methylation markers and their potential to predict human aging, Deborah S. B. S. Silva, Joana Antunes, Kuppareddi Balamurugan, George Duncan, Clarice S. Alho, and Bruce McCord
Cookiecutter: A Tool for Kmer-Based Read Filtering and Extraction, Ekaterina Starostina, Gaik Tamazian, Pavel Dobrynin, Stephen J. O'Brien, and Aleksey Komissarov
Genetic Ancestry of the Extinct Javan and Bali Tigers, Hao-Ran Xue, Nobuyuki Yamaguchi, Carlos A. Driscoll, Yu Han, Gila Kahila Bar-Gal, Yan Zhuang, Ji H. Mazak, David W. Macdonald, Stephen J. O'Brien, and Shu-Jin Luo
A Massive Expansion of Effector Genes Underlies Gall-Formation in the Wheat Pest Mayetiola destructor, Chaoyang Zhao, Lucio Navarro Escalante, Hang Chen, Thiago Benatti, Jiaxin Qu, Sanjay Chellapilla, Robert Waterhouse, David Wheeler, Martin Andersson, Riyue Bao, Matthew Batterton, Susanta Behura, Kerstin Blankenburg, Doina Caragea, James Carolan, Marcus Coyle, Mustapha El-Bouhssini, Liezl Francisco, Markus Friedrich, Navdeep Gill, Tony Grace, Cornelis Grimmelikhuijzen, Yi Han, Frank Hauser, Nicolae Herndon, Michael Holder, Panagiotis Ioannidis, LaRonda Jackson, Mehwish Javaid, Shalini Jhangiani, Alisha Johnson, Divya Kalra, Viktoriya Korchina, Christie Kovar, Fremiet Lara, Sandra Lee, Xuming Liu, Christer Löfstedt, Robert Mata, Tittu Mathew, Donna Muzny, Swapnil Nagar, Lynne Nazareth, Geoffrey Okwuonu, Fiona Ongeri, Lora Perales, Brittany Peterson, Ling-Ling Pu, Hugh Robertson, Brandon Schemerhorn, Steven Scherer, Jacob Shreve, DeNard Simmons, Subhashree Subramanyam, Rebecca Thornton, Kun Xue, George Weissenberger, Christie Williams, Kim Worley, Dianhui Zhu, Yiming Zhu, Marion O. Harris, Richard Shukle, John Werren, Evgeny Zdobnov, Ming-Shun Chen, Susan Brown, Jeffery Stuart, and Stephen Richards
Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification, Kirsten Ziesemer, Allison Mann, Krithivasan Sankaranarayanan, Hannes Schroeder, Andrew T. Ozga, Bernd W. Brandt, Egija Zaura, Andrea Waters-Rist, Menno Hoogland, Domingo C. Salazar-Garcia, Mark Aldenderfer, Camilla Speller, Jessica Hendy, Darlene A. Weston, Sandy J. MacDonald, Gavin H. Thomas, Matthew J. Collins, Cecil M. Lewis Jr., Corinne Hofman, and Christina Warinner
Submissions from 2014
Carcinoembryonic Antigen Promotes Colorectal Cancer Progression by Targeting Adherens Junction Complexes, Olga Bajenova, Nina Chaika, Elena Tolkunova, Alexander Davydov-Sinitsyn, Svetlana Gapon, Peter Thomas, and Stephen J. O'Brien
Genetic Factors Involved in Human Colorectal Cancer Metastasis, Olga Bajenova and Stephen J. O'Brien
Identification of spermatozoa by tissue-specific differential DNA methylation using bisulfite modification and pyrosequencing, Kuppareddi Balamurugan, Robin Bombardi, George Duncan, and Bruce McCord
Genome-Wide Mycobacterium tuberculosis Variation (GMTV) Database: A New Tool for Integrating Sequence Variations and Epidemiology, Ekaterina N. Chernyaeva, Marina V. Shulgina, Mikhail Rotkevich, Pavel Dobrynin, Serguei Simonov, Egor A. Shitikov, Dmitry S. Ischenko, Irina Y. Karpova, Elena S. Kostryukova, Elena N. Ilina, Vadim M. Govorun, Vyacheslav Y. Zhuravlev, Olga A. Manicheva, Peter K. Yablonsky, Yulia D. Isaeva, Elena Y. Nosova, Igor V. Mokrousov, Anna A. Vyazovaya, Olga V. Narvskaya, Alla L. Lapidus, and Stephen J. O'Brien
The Relationship of the Lipoprotein SsaB, Manganese and Superoxide Dismutase in Streptococcus sanguinis Virulence for Endocarditis, Katie E. Crump, Brian Bainbridge, Sarah Brusko, Lauren S. Turner, Xiuchun Ge, Victoria Stone, Ping Xu, and Todd Kitten
Endogenous Retrovirus Insertion in the KIT Oncogene Determines White and White spotting in Domestic Cats, Victor A. David, Marilyn Menotti-Raymond, Andrea Coots Wallace, Melody E. Roelke, James Kehler, Robert Leighty, Eduardo Eizirik, Steven S. Hannah, George Nelson, Alejandro A. Schaffer, Catherine J. Connelly, Stephen J. O'Brien, and David K. Ryugo
Correction: evidence for the requirement of 14-3-3eta (YWHAH) in meiotic spindle assembly during mouse oocyte maturation, Santanu De and Douglas Kline
Landscape of Transposable Elements in Mycosphaerella graminicola, Braham Dhillon, Navdeep Gill, Richard Hamelin, and Stephen Goodwin
Mate Disruption in the Water Strider Aquaris remigis Say, 1832 (Hemiptera: Gerridae), Omar T. Eldakar and Andrew C. Gallup
Neurogenesis from Stem Cells, Veronica R. Fortino, Devon Pawley, Nastasja Ecker, Zenith Acosta, Juan A. Kochen, and Herman S. Cheung
Winner and Loser Effects in Major League Baseball Double Headers, Andrew C. Gallup and Omar T. Eldakar
The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes, GIGA Community of Scientists, Jose V. Lopez, Stephen J. O'Brien, Charles Messing, M. Christina Diaz, Nicole D. Fogarty, and Matthew Johnston
Sequence-Based Analysis of Structural Organization and Composition of the Cultivated Sunflower (Helianthus annuus L.) Genome, Navdeep Gill, Matteo Buti, Nolan Kane, Arnaud Bellec, Nicolas Helmstetter, Hélène Berges, and Loren Rieseberg
Evaluation and Integration of Genetic Signature for Prediction Risk of Nasopharyngeal Carcinoma in Southern China, Xiuchan Guo, Cheryl Winkler, Ji Li, Li Guan, Minzhong Tang, Jian Liao, Hong Deng, Guy de The, Yi Zeng, and Stephen J. O'Brien
Multimodal Sensory Reliance in the Nocturnal Homing of the Amblypygid Phrynus pseudoparvulus (Class Arachnida, Order Amblypygi)?, Eileen A. Hebets, Alfonso Aceves-Aparicio, Samuel Aguilar-Arguello, Verner P. Bingman, Ignacio Escalante, Eben Gering, David R. Nelsen, Jennifer Rivera, Jose Angel Sanchez-Ruiz, Laura Segura-Hernandez, Virginia Settepani, Daniel D. Wiegmann, and Jay A. Stafstrom
Nocturnal Homing in the Tropical Amblypygid Phrynus pseudoparvulus (Class Arachnida, Order Amblypygi), Eileen A. Hebets, Eben Gering, Verner P. Bingman, and Daniel D. Wiegmann
Whole-Genome Analyses Resolve Early Branches in the Tree of Life of Modern Birds, Erich D. Jarvis, Siavash Mirarab, Andre J. Aberer, Bo Li, Peter Houde, Cai Li, Simon Y. W. Ho, Brant C. Faircloth, Benoit Nabholz, Jason T. Howard, Alexander Suh, Claudia C. Weber, Rute R. da Fonseca, Jianwen Li, Fang Zhang, Hui Li, Long Zhou, Nitish Narula, Liang Lu, Ganesh Ganapathy, Bastien Boussau, Md. Shamsuzzoha Bayzid, Volodymyr Zavidovych, Sankar Subramanian, Toni Gabaldon, Salvador Capella-Gutierrez, Jaime Huerta-Cepas, Bhanu Rekepalli, Kasper Munch, Mikkel Schierup, Bent Lindow, Wesley C. Warren, David Ray, Richard E. Green, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Shengbin Li, Ning Li, Yinhua Huang, Elizabeth Derryberry, Mads F. Bertelsen, Frederick H. Sheldon, Robb T. Brumfield, Claudio V. Mello, Peter V. Lovell, Morgan Wirthlin, Maria Paula Cruz Schneider, Francisco Prosdocimi, Jose Alfredo Samaniego, Ahmed Missael Vargas Velazquez, Alonzo Alfaro-Nunez, Paula F. Campos, Bent Petersen, Thomas Sicheritz-Ponten, An Pas, Tom Bailey, Paul Scofield, Michael Bunce, David M. Lambert, Qi Zhou, Polina L. Perelman, Amy C. Driskell, Beth Shapiro, Zijun Xiong, Yongli Zeng, Shiping Liu, Zhenyu Li, Binghang Liu, Kui Wu, Jin Xiao, Xiong Yinqi, Qiumei Zheng, Yong Zhang, Huanming Yang, Jian Wang, Linnea Smeds, Frank E. Rheindt, Michael Braun, Jon Fjeldsa, Ludovic Orlando, F. Keith Barker, Knud Andreas Jonsson, Warren E. Johnson, Klaus-Peter Koepfli, Stephen J. O'Brien, David Haussler, Oliver A. Ryder, Carsten Rahbek, Eske Willerslev, Gary R. Graves, Travis C. Glenn, John McCormack, Dave Burt, Hans Ellegren, Per Alstrom, Scott V. Edwards, Alexandros Stamatakis, David P. Mindell, Joel Cracraft, Edward L. Braun, Tandy Warnow, Wang Jun, M. Thomas P. Gilbert, and Guojie Zhang
Stressing the Steroids in Skin: Paradox or Fine-Tuning?, Ivan Jozic, Olivera Stojadinovic, Robert S. F. Kirsner, and Marjana Tomic-Canic
A Thermal Window for Yawning in Humans: Yawning as a Brain Cooling Mechanism, Jorg J. M. Massen, Kim Dusch, Omar T. Eldakar, and Andrew C. Gallup
Development of MHC-Linked Microsatellite Markers in the Domestic Cat and Their Use to Evaluate MHC Diversity in Domestic Cats, Cheetahs, and Gir Lions, Katrina M. Morris, Katherine Kirby, Julia A. Beatty, Vanessa R. Barrs, Sonia Cattley, Victor David, Stephen J. O'Brien, Marilyn Menotti-Raymond, and Katherine Belov
Phylogeography and Population History of Leopardus guigna, the Smallest American Felid, Constanza Napolitano, Warren E. Johnson, Jim Sanderson, Stephen J. O'Brien, A. Rus Hoelzel, Rachel Freer, Nigel Dunstone, Kermit Ritland, Carol E. Ritland, and Elie Poulin
Progress of Mesenchymal Stem Cell Therapy for Neural and Retinal Diseases, Tsz Kin Ng, Veronica R. Fortino, Daniel Pelaez, and Herman S. Cheung
The Birds of Genome10K, Stephen J. O'Brien, David Haussler, and Oliver A. Ryder
Gene Discovery and Data Sharing in Genome Wide Association Analyses: Lessons Form AIDS Genetic Restriction Genes, Stephen J. O'Brien, Anton Svitin, Sergey Malov, Nikolay Cherkasov, Pavel Dobrynin, Paul Geerts, Jennifer L. Troyer, Sher L. Hendrickson, Efe Sezgin, and Holli Hutcheson
Evolutionary Genomics and Adaptive Evolution of the Hedgehog Gene Family (Shh, Ihh and Dhh) in Vertebrates, Joana Pereira, Warren E. Johnson, Stephen J. O'Brien, Erich D. Jarvis, Guojie Zhang, M. Thomas P. Gilbert, Vitor Vasconcelos, and Agostinho Antunes
High-resolution melt analysis of the minisatellite D1S80: A potential forensic screening tool, Robert S. Pomeroy, Kuppareddi Balamurugan, Helena Wong, and George Duncan
Transcriptome analysis of the entomopathogenic oomycete Lagenidium giganteum reveals putative virulence factors, P. F. Quiroz Velasquez, S. K. Abiff, K. C. Fins, Q. B. Conway, N. C. Salazar, A. P. Delgado, J. K. Dawes, L. G. Douma, and Aurelien Tartar
Genetic Characterization and Role in Virulence of the Ribonucleotide Reductases of Streptococcus sanguinis, DeLacy V. Rhodes, Katie E. Crump, Olga Makhlynets, Melanie Snyder, Xiuchun Ge, Ping Xu, JoAnne Stubbe, and Todd Kitten
Incorporating a fitness goal into the fabric of your life, Emily F. Schmitt Lavin
Service learning in science education: A valuable and useful endeavor for biology majors, Emily F. Schmitt Lavin and Kaitlin Donovan
Programmed Allee Effect in Bacteria Causes a Tradeoff Between Population Spread and Survival, Robert P. Smith, Cheemang Tan, Jaydeep K. Srimani, Anand Pai, Katherine A. Riccione, Hao Song, and Lingchong You
GWATCH: A Web Platform for Automated Gene Association Discovery Analysis, Anton Svitin, Sergey Malov, Nikolay Cherkasov, Paul Geerts, Mikhail Rotkevich, Pavel Dobrynin, Andrey Shevchenko, Li Guan, Jennifer L. Troyer, Sher L. Hendrickson, Holli Hutcheson Dilks, T. K. Oleksyk, Sharyne Donfield, Edward Gomperts, Douglas A. Jabs, Efe Sezgin, Mark Van Natta, P. Richard Harrigan, Zabrina L. Brumme, and Stephen J. O'Brien
Annotated Features of Domestic Cat – Felis catus Genome, Gaik Tamazian, Serguei Simonov, Pavel Dobrynin, Alexey Makunin, Anton Logachev, Aleksey Komissarov, Andrey Shevchenko, Vladimir Brukhin, Nikolay Cherkasov, Anton Svitin, Klaus-Peter Koepfli, Joan Pontius, Carlos A. Driscoll, Kevin Blackistone, Cristina Barr, David Goldman, Agostinho Antunes, Javier Quilez, Belen Lorente-Galdos, Can Alkan, Tomas Marques-Bonet, Marilyn Menotti-Raymond, Victor A. David, Kristina Narfstrom, and Stephen J. O'Brien
Phenotypic Signatures Arising from Unbalanced Bacterial Growth, Cheemang Tan, Robert P. Smith, Ming-Chi Tsai, Russell Schwartz, and Lingchong You
An Investigation of PCR Inhibition Using Plexor®-Based Quantitative PCR and Short Tandem Repeat Amplification, Robyn E. Thompson, George Duncan, and Bruce McCord
Cardiac performance, biomarkers and gene expression studies in previously sedentary men participating in half-marathon training, Danica D. Vance, Gordon L. Chen, Mark Stoutenberg, Robert J. Myerburg, Kevin Jacobs, Lubov Nathanson, Arlette Perry, David Seo, Pascal J. Goldschmidt-Clermont, and Evadnie Rampersaud
The Dynamic Proliferation of CanSINEs Mirrors the Complex Evolution of Feliforms, Kathryn B. Walters-Conte, Diana L. E. Johnson, Warren E. Johnson, Stephen J. O'Brien, and Jill Pecon-Slattery
Five Decades of Invasion Genetics, Kenneth Whitney and Eben Gering
Minke Whale Genome and Aquatic Adaptation in Cetaceans, Hyung-Soon Yim, Yun Sung Cho, Xuanmin Guang, Sung Gyun Kang, Jae-Yeon Jeong, Sun-Shin Cha, Hyun-Myung Oh, Jae-Hak Lee, Eun Chan Yang, Kae Kyoung Kwon, Yun Jae Kim, Tae Wan Kim, Wonduck Kim, Jeong Ho Jeon, Sang-Jin Kim, Dong Han Choi, Sungwoong Jho, Hak-Min Kim, Junsu Ko, Hyunmin Kim, Young-Ah Shin, Hyun-Ju Jung, Yuan Zheng, Zhuo Wang, Yan Chen, Ming Chen, Awei Jiang, Erli Li, Shu Zhang, Haolong Hou, Tae Hyung Kim, Lili Yu, Sha Liu, Kung Ahn, Jesse Cooper, Sing-Gi Park, Chang Pyo Hong, Wook Jin, Heui-Soo Kim, Chankyu Park, Kyooyeol Lee, Sung Chun, Phillip A. Morin, Stephen J. O'Brien, Hang Lee, Jumpei Kimura, Dae Yeon Moon, Andrea Manica, Jeremy Edwards, Byung Chul Kim, Sangsoo Kim, Jun Wang, Jong Bhak, Hyun Sook Lee, and Jung-Hyun Lee
Comparative Genomics Reveals Insights into Avian Genome Evolution and Adaptation, Guojie Zhang, Cai Li, Qiye Li, Bo Li, Denis M. Larkin, Chul Lee, Jay F. Storz, Agostinho Antunes, Matthew J. Greenwold, Robert W. Meredith, Anders Odeen, Jie Cui, Qi Zhou, Luohao Xu, Hailin Pan, Zongji Wang, Lijun Jin, Pei Zhang, Haofu Hu, Wei Yang, Jiang Hu, Jin Xiao, Zhikai Yang, Yang Liu, Qiaolin Xie, Hao Yu, Jinmin Lian, Ping Wen, Fang Zhang, Hui Li, Yongli Zeng, Zijun Xiong, Shiping Liu, Long Zhou, Zhiyong Huang, Na An, Jie Wang, Qiumei Zheng, Yingqi Xiong, Guangbiao Wang, Bo Wang, Jingjing Wang, Yu Fan, Rute R. da Fonseca, Alonzo Alfaro-Nunez, Mikkel Schubert, Ludovic Orlando, Tobias Mourier, Jason T. Howard, Ganeshkumar Ganapathy, Andreas Pfenning, Osceola Whitney, Miram V. Rivas, Erina Hara, Julia Smith, Marta Farre, Jitendra Narayan, Gancho Slavov, MIchael N. Romanov, Rui Borges, Joao Paulo Machado, Imran Khan, Mark S. Springer, John Gatesy, Frederico G. Hoffmann, Juan C. Opazo, Olle Hastad, Roger H. Sawyer, Heebal Kim, Kyu-Won Kim, Hyeon Jeong Kim, Seoae Cho, Ning Li, Yinhua Huang, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Mads F. Bertelsen, Elizabeth Derryberry, Wesley Warren, Richard K. Wilson, Shengbin Li, David A. Ray, Richard E. Green, Stephen J. O'Brien, Darren Griffin, Warren E. Johnson, David Haussler, Oliver A. Ryder, Eske Willerslev, Gary R. Graves, Per Alstrom, Jon Fjeldsa, David P. Mindell, Scott V. Edwards, Edward L. Braun, Carsten Rahbek, David W. Burt, Peter Houde, Yong Zhang, Huanming Yang, Jian Wang, Avian Genome Consortium, Erich D. Jarvis, M. Thomas P. Gilbert, and Jun Wang
Submissions from 2013
A Genome-To-Genome Analysis of Associations between Human Genetic Variation, HIV-1 Sequence Diversity, and Viral Control, Istvan Bartha, Jonathan M. Carlson, Chanson J. Brumme, Paul J. McLaren, Zabrina L. Brumme, Mina John, David W. Haas, Javier Martinez-Picado, Judith Dalmau, Cecilio Lopez-Galindez, Concepcion Casado, Andri Rauch, Huldrych F. Gunthard, Enos Bernasconi, Pietro Vernazza, Thomas Klimkait, Sabine Yerly, Stephen J. O'Brien, Jennifer Listgarten, Nico Pfeifer, Christoph Lippert, Nicolo Fusi, Zoltan Kutalik, Todd M. Allen, Viktor Muller, P. Richard Harrigan, David Heckerman, Amalio Telenti, and Jacques Fellay
Alteredimmune pathway activity under exercise challenge in Gulf War Illness: An exploratory analysis, G. Broderick, R. Ben-Hamo, S. Vashishtha, S. Efroni, Lubov Nathanson, Z. Barnes, Mary A. Fletcher, and Nancy G. Klimas
The Tiger Genome and Comparative Analysis with Lion and Snow Leopard Genomes, Yun Sung Cho, Li Hu, Haolong Hou, Hang Lee, Jiaohui Xu, Soowhan Kwon, Sukhun Oh, Hak-Min Kim, Sungwoong Jho, Sangsoo Kim, Young-Ah Shin, Byung Chul Kim, Hyunmin Kim, Chang-uk Kim, Shu-Jin Luo, Warren E. Johnson, Klaus-Peter Koepfli, A. Schmidt-Kunzel, Jason A. Turner, L. Marker, Cindy K. Harper, Susan M. Miller, Wilhelm Jacobs, Laura D. Bertola, Tae Hyung Kim, Sunghoon Lee, Qian Zhou, Hyun-Ju Jung, Xiao Xu, Priyvrat Gadhvi, Pengwei Xu, Yingqi Xiong, Yadan Luo, Shengkai Pan, Caiyun Gou, Xiuhui Chu, Jilin Zhang, Sanyang Liu, Jing He, Ying Chen, Linfeng Yang, Yulan Yang, Jiaju He, Sha Liu, Junyi Wang, Chul Hong Kim, Hwanjong Kwak, Jong-Soo Kim, Seungwoo Hwang, Junsu Ko, Chang-Bae Kim, Sangtae Kim, Damdin Bayarlkhagva, Woon Kee Paek, Seong-Jin Kim, Stephen J. O'Brien, Jun Wang, and Jong Bhak
Antioxidant Treatment Regulates the Humoral Immune Response during Acute Viral Infection, Katie E. Crump, P. Kent Langston, Sujana Rajkarnikar, and Jason M. Grayson
Evidence for the requirement of 14-3-3eta (YWHAH) in meiotic spindle assembly during mouse oocyte maturation, Santanu De and Douglas Kline
Allelopathy as an Emergent, Exploitable Public Good in the Bloom-Forming Microalga Prymnesium parvum, William W. Driscoll, Noelle J. Espinosa, Omar T. Eldakar, and Jeremiah D. Hackett
When Hawks Give Rise to Doves: The Evolution of Enforcement Strategies, Omar Tonsi Eldakar, W. W. Driscoll, and A. C. Gallup
Critical Research Needs for Identifying Future Changes in Gulf Coral Reef Ecosystems, David A. Feary, John A. Burt, Andrew G. Bauman, Shaker Al Hazeem, Mohamed A. Abdel-Moati, Khalifa A. Al-Khalifa, Donald M. Anderson, Carl Amos, Andrew Baker, Aaron Bartholomew, Rita Bento, Georgenes H. Cavalcante, Chaolun Allen Chen, Steve L. Coles, Koosha Dab, Ashley M. Fowler, David George, Edwin Grandcourt, Ross Hill, David M. John, David A. Jones, Shashank Keshavmurthy, Huda Mahmoud, Mahdi Moradi Och Tapeh, Pargol Ghavam Mostafavi, Humood Naser, Michel Pichon, Samuel J. Purkis, Bernhard Riegl, Kaveh Samimi-Namin, Charles R. C. Sheppard, Jahangir Vajed Samiei, Christian R. Voolstra, and Joerg Wiedenmann
Neurogenesis of Neural Crest-Derived Periodontal Ligament Stem Cells by EGF and bFGF, Veronica R. Fortino, Ren-Shiang Chen, Daniel Pelaez, and Herman S. Cheung
Concise Review: Stem Cell Therapies for Neuropathic Pain, Veronica R. Fortino, Daniel Pelaez, and Herman S. Cheung
The Thermoregulatory Theory of Yawning: What We Know from Over Five Years of Research, Andrew C. Gallup and Omar Tonsi Eldakar
Genetic and Phylogenetic Evidence for Horizontal Gene Transfer Among Ecologically Disparate Groups of Marine Vibrio, Maria Hoffman, Steven R. Monday, Peter J. McCarthy, Jose V. Lopez, Markus Fischer, and Eric W. Brown
Molecular Evidence for a Recent Demographic Expansion in the Puma (Puma concolor) (Mammalia, Felidae), Eunice M. Matte, Camila S. Castilho, Renata A. Miotto, Denis A. Sana, Warren E. Johnson, Stephen J. O'Brien, Thales R. O. de Freitas, and Eduardo Eizirik
Copy number variation in pediatric multiple sclerosis, J. P. McElroy, L. B. Krupp, B. A. Johnson, J. L. McCauley, Z. Qi, S. J. Caillier, P. A. Gourraud, J. Yu, Lubov Nathanson, A. L. Belman, S. L. Hauser, E. Waubant, D. J. Hedges, and J. R. Oksenberg
Association Study of Common Genetic Variants and HIV- 1 Acquisition in 6,300 Infected Cases and 7,200 Controls, Paul J. McLaren, Cedric Coulonges, Stephan Ripke, Leonard H. van den Berg, Susan Buchbinder, Mary Carrington, Andrea Cossarizza, Judith Dalmau, Steven G. Deeks, Olivier Delaneau, Andrea De Luca, James J. Goedert, David W. Haas, Joshua T. Herbeck, Sekar Kathiresan, Gregory D. Kirk, Olivier Lambotte, Ma Luo, Simon Mallal, Danielle van Manen, Javier Martinez-Picado, Florencia Pereyra, Francis A. Plummer, Guido Poli, Ying Qi, Pierre Rucart, Manj S. Sandhu, Patrick R. Shea, Hanneke Schuitemaker, Ioannis Theodorou, Fredrik Vannberg, Jan Veldink, Bruce D. Walker, Amy C. Weintrob, Cheryl Winkler, Steven M. Wolinsky, Amalio Telenti, David B. Goldstein, Paul I. W. de Bakker, Jean-Francois Zagury, and Jacques Fellay
The Repetitive Component of the Sunflower Genome as Shown by Different Procedures for Assembling Next Generation Sequencing Reads, Lucia Natali, Rosa Maria Cossu, Elena Barghini, Tommaso Giordani, Matteo Buti, Flavia Mascagni, Michele Morgante, Navdeep Gill, Nolan Kane, Loren Rieseberg, and Andrea Cavallini
The Influence of Real World Resource Asymmetries on Punishment in Economic Games, Daniel Tumminelli O'Brien, Andrew C. Gallup, and Omar Tonsi Eldakar
The "Exotic Aliens" Controversy: A View from Afar, Stephen J. O'Brien
Host Genomic Influences on HIV/AIDS, Stephen J. O'Brien and Sher L. Hendrickson
Evolution: A New Cat Species Emerges, Stephen J. O'Brien and Klaus-Peter Koepfli
Increased Cell Surface Free Thiols Identify Effector CD8+ T Cells Undergoing T Cell Receptor Stimulation, Samuel Troy Pellom, Ryan D. Michalek, Katie E. Crump, P. Kent Langston, Daniel G. Juneau, and Jason M. Grayson
Genome-Wide and Differential Proteomic Analysis of Hepatitis B Virus and Aflatoxin B1 Related Hepatocellular Carcinoma in Guangxi, China, Lu-Nan Qi, Le-Qun Qi, Yuan-Yuan Chen, Zhao-Hong Chen, Tao Bai, Bang-De Xiang, Xiao Qin, Kai-Yin Xiao, Min-Hao Peng, Zhi-Ming Liu, Tang-Wei Liu, Xue Qin, Shan Li, Ze-Guang Han, Zeng-Nan Mo, Regina M. Santella, Cheryl Winkler, Stephen J. O'Brien, and Tao Peng
Genomic Signatures of a Global Fitness Index in a Multi-Ethnic Cohort of Women, E. Rampersaud, Lubov Nathanson, J. Farmer, K. Meshbane, R. L. Belton, A. Dressen, M. Cuccaro, A. Musto, S. Daunert, S. Deo, N. Hudson, J. M. Vance, A. Mendez, D. M. Dykzhoorn, M. A. Pericak-Vance, and P. J. Goldschmidt-Clermont
Patterns of Population Structure for Inshore Bottlenose Dolphins along the Eastern United States, Vincent P. Richards, Thomas W. Greig, Patricia A. Fair, Stephen D. McCullouch, Christine Politz, Ada Natoli, Carlos A. Driscoll, A. Rus Hoelzel, Victor David, Gregory D. Bossart, and Jose V. Lopez
Exploring life and death at the cellular level: An examination of how our cells can live without us, Emily F. Schmitt Lavin
Browser for a Genome, Serguei Simonov, Alexey Makunin, and Stephen J. O'Brien
Nonself Recognition Through Intermolecular Disulfide Bond Formation of Ribonucleotide Reductase in Neurospora, Robert P. Smith, Kenji Wellman, Leila Haidari, Hirohisa Masuda, and Myron L. Smith
Trans-Species Activity of a Nonself Recognition Domain, Robert P. Smith, Kenji Wellman, and Myron L. Smith
Assays optimized for detection and quantification of antibacterial activity in shark cell lysates under high salt conditions, Sylvia L. Smith and Nichole Vaughan
The Yellow Stingray, Urobatis jamaicensis (Chondrichthyes Urotrygonidae): A Synoptic Review, Richard E. Spieler, Daniel P. Fahy, Robin L. Sherman, James Sulikowski, and T. Patrick Quinn
In vitro global gene expression analyses support the ethnopharmacological use of Achyranthes aspera, Pochi R. Subbarayan, Malancha Sarkar, Lubov Nathanson, Nikesh Doshi, Balakrishna L. Lokeshwar, and Bach Ardalan
Transposon Fingerprinting Using Low Coverage Whole Genome Shotgun Sequencing in Cacao (Theobroma cacao L.) and Related Species, Saemundur Sveinsson, Navdeep Gill, Nolan Kane, and Quentin Cronk
The non-photosynthetic algae Helicosporidium spp.: emergence of a novel group of insect pathogens, Aurelien Tartar
Trematode prevalence-occupancy relationships on regional and continental spatial scales in marine gastropod hosts, David W. Thieltges, David J. Marcogliese, Christopher A. Blanar, and R. Poulin