CNSO Faculty Articles

CNSO Faculty Articles

 

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Submissions from 2001

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Environmental Analysis of Cores from the Helike Delta, Gulf of Corinth, Greece, S. Soter, Patricia Blackwelder, C. Tziavos, D. Katsonopoulou, Terri Hood, and Carlos A. Alvarez Zarikian

Circadian Timing of Meal Feeding and Growth in Fishes, Richard E. Spieler

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Artificial Substrate and Coral Reef Restoration: What Do We Need to Know to Know What We Need, Richard E. Spieler, David S. Gilliam, and Robin L. Sherman

Integration of the Feline Radiation Hybrid and Linkage Maps, Shan Sun, William J. Murphy, Marilyn Menotti-Raymond, and Stephen J. O'Brien

Multisensor Sampling of Pelagic Ecosystem Variables in a Coastal Environment to Estimate Zooplankton Grazing Impact, Tracey Sutton, T. L. Hopkins, Andrew Remsen, and Scott Burghhart

Racial Differences in HLA Class II Associations with Hepatitis C Virus Outcomes, Chloe L. Thio, David L. Thomas, James J. Goedert, David Vlahov, Kenrad E. Nelson, Margaret Hilgartner, Stephen J. O'Brien, Peter Karacki, Darlene Marti, Jacquie Astemborski, and Mary Carrington

Phylogenetics, Genome Diversity and Origin of Modern Leopard, Panthera pardus, Olga Uphyrkina, Warren E. Johnson, Howard Quigley, Dale Miquelle, L. Marker, and Stephen J. O'Brien

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NCRI 3-D Visualization of Coral Reef Habitat, Brian K. Walker

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Gross Brain Morphology in the Yellow Stingray, Urobatis jamaicensis, Brian K. Walker and Robin L. Sherman

The Speed of an Isolume: A Shrimp's Eye View, Edith A. Widder and Tamara M. Frank

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Immunologic and Virologic Response to Highly Active Antiretroviral Therapy in the Multicenter AIDS Cohort Study, Traci Yamashita, John Phair, A. Muñoz, Joseph Margolick, Roger Detels, Stephen J. O'Brien, John Mellors, Steven M. Wolinsky, and Lisa Jacobson

Equivalence of the Wielandt Inequality and the Kantorovich Inequality, Fuzhen Zhang

Matrix Inequalities by Means of Block Matrices, Fuzhen Zhang

Jordan Canonical Form of a Partitioned Complex Matrix and Its Applications to Real Quaternion Matrices, Fuzhen Zhang and Yimin Wei

Submissions from 2000

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Unusual Polymorphisms in Human Immunodeficiency Virus Type 1 Associated with Nonprogressive Infection, Louis Alexander, Emma Weiskopf, Thomas C. Greenough, Nathan C. Gaddis, Marcy C. Auerbach, MIchael H. Malim, Stephen J. O'Brien, Bruce D. Walker, John L. Sullivan, and Ronald C. Desrosiers

Genetic Heterogeneity and Molecular Epidemiology of GB Virus C/Hepatitis G Virus in China, Ping An, H. Luo, T. Lu, Stephen J. O'Brien, and Cheryl Winkler

Influence of CCR5 Promoter Haplotypes on AIDS Progression in African–Americans, Ping An, Maureen P. Martin, George W. Nelson, Mary Carrington, Michael W. Smith, Kui Gong, David Vlahov, Stephen J. O'Brien, and Cheryl Winkler

Distribution of the HLA-DQA1 and Polymarker Alleles in the Basque Population of Spain, Robert J. Brown, Diane Rowold, Mohammed Tahir, Charles Barna, George Duncan, and Rene J. Herrera

Genomic Ancestry of the American Puma (Puma concolor), Melanie Culver, Warren E. Johnson, Jill Pecon-Slattery, and Stephen J. O'Brien

In vitro strand transfer from broken RNAs results in mismatch but not frameshift mutations, Jeffrey J. DeStefano, Aarti Raja, and Jason V. Christofaro

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Oxidation of [(Cyclic Triamine)(1,5-Cyclooctadiene)Iridium]+ Cations by Hydrogen Peroxide Forms Metallaoxetanes, Thomas C. Flood, Masanori Iimura, Jeremy M. Perotti, Arnold L. Rheingold, and Thomas E. Concolino

Temporal Resolution in Mesopelagic Crustaceans, Tamara M. Frank

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CI Aquilae, M. O. Jesacher, Stefan Kautsch, S. Kimeswenger, M. S. Muhlbacher, W. Saurer, S. Schmeja, and C. K. Scholz

Significant Admixture Linkage Disequilibrium Across 30 cM Around the FY Locus in African Americans, J. A. Lautenberger, J. Claiborne Stephens, Stephen J. O'Brien, and Michael W. Smith

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Andros Island Flora and Fauna in the New Millennium, Jose V. Lopez, Cheryl L. Peterson, Felix Morales, and Luther Brown

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ACTH4 -10, Substance P, and Dizolcipine (Mk-801) Accelerate Functional Recovery After Hemilabyrinthectomy in Goldfish, Rosana Mattioli, Joseph P. Huston, and Richard E. Spieler

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A Radiation Hybrid Map of the Cat Genome: Implications for Comparative Mapping, William J. Murphy, Shan Sun, Zhang-Qun Chen, Naoya Yuhki, Deborah Hirschmann, Marilyn Menotti-Raymond, and Stephen J. O'Brien

Adaptive Cycles: Parasites Selectively Reduce Inbreeding in Soay Sheep, Stephen J. O'Brien

The Effect of Genetic Variation in Chemokines and Their Receptors on HIV Transmission and Progression to AIDS, Stephen J. O'Brien and John P. Moore

Polygenic and Multifactorial Disease Gene Association in Man: Lessons from AIDS, Stephen J. O'Brien, George W. Nelson, Cheryl Winkler, and Michael W. Smith

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A Model of Balance of Payments Crisis: Monetary Independences as a Determinant of Exchange Rate Disequilibria, Ordean G. Olson and Matthew He

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Patterns of Diversity Among SINE Elements Isolated from Three Y-Chromosome Genes in Carnivores, Jill Pecon-Slattery, William J. Murphy, and Stephen J. O'Brien

Biostromal Coral Facies—A Miocene Example from the Leitha Limestone (Austria) and its Actualistic Interpretation, Bernhard Riegl and Werner Piller

Mapping of Benthic Habitats in Northern Safaga Bay (Red Sea, Egypt): A Tool for Proactive Management, Bernhard Riegl and Werner Piller

Development of Microsatellite Markers in the Guanaco, Lama guanicoe: Utility for South American Camelids, Ronald J. Sarno, Victor A. David, William L. Franklin, Stephen J. O'Brien, and Warren E. Johnson

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VHF Radar Detects Oceanic Submesoscale Vortex Along Florida Coast, Lynn K. Shay, Thomas M. Cook, Brian K. Haus, Jorge Martinez, Hartmut Peters, Arthur Mariano, John VanLeer, Edgar An, Samuel Smith, Alexander Soloviev, Robert H. Weisberg, and Mark E. Luther

Genetic Restriction of HIV-1 Pathogenesis to AIDS by Promoter Alleles of IL10, Hyoung Doo Shin, Cheryl Winkler, J. Claiborne Stephens, Jay Bream, Howard Young, James J. Goedert, Thomas R. O'Brien, David Vlahov, Susan Buchbinder, Janis Giorgi, Charles Rinaldo, Sharyne Donfield, Anne Willoughby, Stephen J. O'Brien, and Michael W. Smith

Novel Gene Conversion Between X-Y Homologues Located in the Nonrecombining Region of the Y Chromosome in Felidae (Mammalia), Jill Pecon Slattery, Leslie Sanner-Wachter, and Stephen J. O'Brien

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Horizontal Structure of the Upper Ocean Velocity and Density Fields in the Western Equatorial Pacific Warm Pool: Depth Range from 20 to 250 m, Alexander Soloviev, Roger Lukas, and Peter Hacker

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On the Hadamard Product of Inverse M-matrices, Bo-Ying Wang, Xiuping Zhang, and Fuzhen Zhang

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A Surface-Enhanced Raman and ab Initio Study of Spectra of Lumazine Molecules, Paula A. Faria Waziry, Xingxing Chen, John R. Lombardi, and Ronald L. Birke

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Equivalence of a Matrix Product to the Kronecker Product, Yimin Wei and Fuzhen Zhang

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Schur Complements and Matrix Inequalities in Lowner Ordering, Fuzhen Zhang

Submissions from 1999

Sur L'analyse Spectrale des Opérateurs de Convolution du Groupe Affine de la Droite Réelle. (French. English, French summary) [Spectral Analysis of the Convolution Operators of the Affine Group of the Real Line], Abdelkrim Bourouihiya and S. Kabbaj

CCR5 Promoter Alleles and Specific DNA Binding Factors, Jay Bream, Howard A. Young, Nancy Rice, Maureen P. Martin, Michael W. Smith, Mary Carrington, and Stephen J. O'Brien

Equine Synteny Mapping of Comparative Anchor Tagged Sequences (CATS) From Human Chromosome 5, Alexandre R. Caetano, Leslie A. Lyons, Thomas F. Laughlin, Stephen J. O'Brien, James D. Murray, and Ann T. Bowling

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A Comparative Gene Map of the Horse (Equus caballus), Alexandre R. Caetano, Yow-Ling Shiue, Leslie A. Lyons, Stephen J. O'Brien, Thomas F. Laughlin, Ann T. Bowling, and James D. Murray

Genetics of HIV-1 Infection: Chemokine Receptor Ccr5 Polymorphism and its Consequences, Mary Carrington, Michael Dean, Maureen P. Martin, and Stephen J. O'Brien

HLA and HIV-1: Heterozygote Advantage and B*35-Cw*04 Disadvantage, Mary Carrington, George W. Nelson, Maureen P. Martin, Teri Kissner, David Vlahov, James J. Goedert, Richard A. Kaslow, Susan Buchbinder, Keith Hoots, and Stephen J. O'Brien

A Human Genome Map of Comparative Anchor Tagged Sequences, Z-Q. Chen, J. A. Lautenberger, Leslie A. Lyons, L. McKenzie, and Stephen J. O'Brien

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Effects of Plasma HIV RNA, CD4+ T Lymphocytes, and the Chemokine Receptors CCR5 and CCR2b on HIV Disease Progression in Hemophiliacs, Eric S. Daar, Sharyne Donfield, Edward Gomperts, Margaret Hilgartner, Keith Hoots, David Chernoff, Cheryl Winkler, Stephen J. O'Brien, and Hemophilia Growth and Development Study

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Reduced Risk of AIDS Lymphoma in Individuals Heterozygous for the CCR5-Δ32 Mutation, Michael Dean, Lisa Jacobson, Glen McFarlane, Joseph Margolick, Frank J. Jenkins, O. M. Zack Howard, Hui-Fang Dong, James J. Goedert, Susan Buchbinder, Edward Gomperts, David Vlahov, Joost J. Oppenheim, Stephen J. O'Brien, and Mary Carrington

Comparative Study of Temporal Resolution in the Visual Systems of Mesopelagic Crustaceans, Tamara M. Frank

Comparative Study of the Spectral Sensitivities of Mesopelagic Crustaceans, Tamara M. Frank and Edith A. Widder

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Long-Term Nonprogressive Infection with Human Immunodeficiency Virus Type 1 in a Hemophilia Cohort, Thomas C. Greenough, Doreen B. Brettler, Frank Kirchhoff, Louis Alexander, Stephen J. O'Brien, Mohan Somasundaran, Katherine Luzuriaga, and John L. Sullivan

Ultrastructural Analysis of Folliculogenesis in the Ovary of the Yellow Spotted Stingray, Urolophus jamaicensis, William C. Hamlett, M. Jezior, and Richard E. Spieler

The Daily Feeding Rhythm to Demand Feeders and the Effects of Timed Meal-Feeding on the Growth of Juvenile Florida Pompano, Trachinotus carolinus, Matthew J. Heilman and Richard E. Spieler

Relativistic Jacobi Polynomials, Matthew He and P. Natalini

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New Class I and II HLA Alleles Strongly Associated with Opposite Patterns of Progression to AIDS, Houria Hendel, Sophie Caillat-Zucman, Helene Lebuanec, Mary Carrington, Stephen J. O'Brien, Jean-Marie Andrieu, Francois Schachter, Daniel Zagury, Jay Rappaport, Cheryl Winkler, George W. Nelson, and Jean-Francois Zagury

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Molecular Genetic Diversity and Evolution at the MHC DQB Locus in Four Species of Pinnipeds, A. Rus Hoelzel, J. Claiborne Stephens, and Stephen J. O'Brien

Algal Blooms on Coral Reefs: What Are the Causes?, Terry Hughes, Alina Szmant, Robert S. Steneck, Robert Carpenter, and Steven Miller

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A Scan for Linkage Disequilibrium Across the Human Genome, Gavin A. Huttley, Michael W. Smith, Mary Carrington, and Stephen J. O'Brien

A Coral Damage Index and its Application to Diving Sites in the Egyptian Red Sea, S. C. Jameson, M. S. A. Ammar, E. Saadalla, H. M. Mostafa, and Bernhard Riegl

Disparate Phylogeographic Patterns of Molecular Genetic Variation in Four Closely Related South American Small Cat Species, Warren E. Johnson, Jill Pecon-Slattery, Eduardo Eizirik, Jae-Heup Kim, Marilyn Menotti-Raymond, Cristian Bonacic, Richard Cambre, Peter G. Crawshaw Jr., Adauto Nunes, Hector N. Seuanez, Miguel A. M. Moreira, K. L. Seymour, Faical Simon, and William Swanson

Predicting High-Frequency Upwelling: Spatial and Temporal Patterns of Temperature Anomalies on a Florida Coral Reef, James Leichter and Steven Miller

Spectral Sensitivity of Vision and Bioluminescence in the Midwater Shrimp Sergestes similis, S. M. Lindsay, Tamara M. Frank, J. Kent, and Michael I. Latz

Molecular Determination of Species Boundaries in Corals: Genetic Analysis of the Montastraea annularis Complex Using Amplified Fragment Length Polymorphisms and a Microsatellite Marker, Jose V. Lopez, Ralf Kersanach, Stephen A. Rehner, and Nancy Knowlton

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Molecular Techniques Reveal Wide Phyletic Diversity of Heterotrophic Microbes Associated with Discodermia spp. (Porifera: Demospongiae), Jose V. Lopez, Peter J. McCarthy, Kathleen E. Janda, Robin Willoughby, and Shirley A. Pomponi

Development of Comparative Anchor Tagged Sequences (CATS) for Canine Genome Mapping, Leslie A. Lyons, J. S. Kehler, and Stephen J. O'Brien

Lack of Chemical Defense in Two Species of Stalked Crinoids: Support for the Predation Hypothesis for Mesozoic Bathymetric Restriction, James B. McClintock, Bill J. Baker, Tomasz K. Baumiller, and Charles G. Messing

Taxonomic Hierarchy of HLA Class I Allele Sequences, L. McKenzie, Jill Pecon-Slattery, Mary Carrington, and Stephen J. O'Brien

A Genetic Linkage Map of Microsatellites in the Domestic Cat (Felis catus), Marilyn Menotti-Raymond, Victor A. David, Leslie A. Lyons, Alejandro A. Schaffer, James F. Tomlin, Michelle K. Hutton, and Stephen J. O'Brien

Effects of Nutrients versus Herbivores on Reef Algae: A New Method for Manipulating Nutrients on Coral Reefs, M. W. Miller, M. E. Hay, Steven Miller, D. Malone, E. E. Sotka, and Alina Szmant

Development of a Feline Whole Genome Radiation Hybrid Panel and Comparative Mapping of Human Chromosome 12 and 22 Loci, William J. Murphy, Marilyn Menotti-Raymond, Leslie A. Lyons, Mary A. Thompson, and Stephen J. O'Brien

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Extensive Conservation of Sex Chromosome Organization Between Cat and Human Revealed by Parallel Radiation Hybrid Mapping, William J. Murphy, Shan Sun, Zhang-Qun Chen, Jill Pecon-Slattery, and Stephen J. O'Brien

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Phenotypic Expressions of CCR5-Δ32/Δ32 Homozygosity, Giang T. Nguyen, Mary Carrington, Judith A. Beeler, Michael Dean, Louis M. Aledort, Philip M. Blatt, Alan R. Cohen, Donna DiMichele, M. Elaine Eyster, Craig M. Kessler, Barbara Konkle, Cindy Leissinger, Naomi Luban, Stephen J. O'Brien, James J. Goedert, and Thomas R. O'Brien

Selection Against Susceptibility to HIV-1, Stephen J. O'Brien and Mary Carrington

Genome Map: Comparative Genomics- Mammalian Radiations, Stephen J. O'Brien, John F. Eisenberg, Michael Miyamoto, S. Blair Hedges, Sudhir Kumar, Don E. Wilson, Marilyn Menotti-Raymond, William J. Murphy, William G. Nash, Leslie A. Lyons, Joan C. Menninger, Roscoe Stanyon, Johannes Wienberg, N. Copeland, Nancy A. Jenkins, Joel Gellin, Martine Yerle, Leif Andersson, James E. Womack, T. Broad, J. Postlethwait, Oleg Serov, Ernie Bailey, Michael R. James, Takeshi Watanabe, Matthew J. Wakefield, and Jennifer Marshall Graves

The Promise of Comparative Genomics in Mammals, Stephen J. O'Brien, Marilyn Menotti-Raymond, William J. Murphy, William Nash, Johannes Wienberg, Roscoe Stanyon, Neal G. Copeland, Nancy A. Jenkins, James E. Womack, and Jennifer A. Marshall Graves

Phylogenomics: Ancestral Primate Viewed, Stephen J. O'Brien and Roscoe Stanyon

Comparative Genome Organization of the Major Histocompatibility Complex: Lessons from the Felidae, Stephen J. O'Brien and Naoya Yuhki

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Viruses of the Serengeti: Patterns of Infection and Mortality in African Lions, Craig Packer, S. Altizer, Max J. G. Appel, Stephen J. O'Brien, M. Roelke-Parker, Regina Hofmann-Lehmann, and Hans Lutz

Kinetic Analysis of the effect of HIV nucleocapsid protein (NCp) on internal strand transfer reactions, Aarti Raja, J. Jeffrey, and J. J. DeStefano

Corals in a Non-Reef Setting in the Southern Arabian Gulf (Dubai, UAE): Fauna and Community Structure in Response to Recurring Mass Mortality, Bernhard Riegl

Ecological Parameters of Dynamited Reefs in the Northern Red Sea and their Relevance to Reef Rehabilitation, Bernhard Riegl and K. E. Luke

Coral Frameworks Revisited - Reefs and Coral Carpets in the Northern Red Sea, Bernhard Riegl and Werner Piller

A Preliminary Examination of Depth Associated Spatial Variation in Fish Assemblages on Small Artificial Reefs, Robin L. Sherman, David S. Gilliam, and Richard E. Spieler

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A Near-Surface Microstructure Sensor System Used During TOGA COARE. Part II: Turbulence Measurements, Alexander Soloviev, Roger Lukas, Peter Hacker, H. Schoeberlein, M. Baker, and A. Arjannikov

Host-Plant Specialization by a Non-Herbivorous Amphipod: Advantages for the Amphipod and Costs for the Seaweed, Erik E. Sotka, Mark E. Hay, and James Darwin Thomas

Post-Trial Administration of H1 Histamine Receptor Blocker Improves Appetitive Reversal Learning and Memory in Goldfish, Carassius auratus, Richard E. Spieler, Carrie A. Nelson, Joseph P. Huston, and Rosana Mattioli

Distribution of Two HIV-1–Resistant Polymorphisms (SDF1-30A and CCR2-64I) in East Asian and World Populations and Its Implication in AIDS Epidemiology, Bing Su, Li Jin, Fang Hu, Junhua Xiao, Jingchun Luo, Daru Lu, Weiling Zhang, Jiayou Chu, Ruofu Du, Zhencheng Geng, Xinfang Qiu, Jinglun Xue, Jiazhen Tan, Stephen J. O'Brien, and Ranajit Chakraborty

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The Use of Proxy Chemical Records in Coral Skeletons to Ascertain Past Environmental Conditions in Florida Bay, Peter Koenraad Swart, Genevieve F. Healy, Lisa Greer, Michael Lutz, Amel Saied, Daniel Anderegg, Richard E. Dodge (editor), and David Rudnick

Class II HLA Alleles and Hepatitis B Virus Persistence in African Americans, Chloe L. Thio, Mary Carrington, Darlene Marti, Stephen J. O'Brien, David Vlahov, Kenrad E. Nelson, Jacquie Astemborski, and David L. Thomas

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Moolapheonoides utmas, New Species, from Coral Reefs in the Madang Lagoon, Papua New Guinea (Amphipoda, Cyproideidae), James Darwin Thomas

Rapid Radiation Events in the Family Ursidae Indicated by Likelihood Phylogenetic Estimation from Multiple Fragments of mtDNA, Lisette P. Waits, Jack Sullivan, Stephen J. O'Brien, and R. H. Ward

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Some Inequalities for Sum and Product of Positive Semidefinite Matrices, Bo-Ying Wang, Bo-Yan Xi, and Fuzhen Zhang

Submissions from 1998

Coral Diseases and Drupella cornus Invasion in the Red Sea, Arnfried Antonius and Bernhard Riegl

CCR2-64I Allele and Genotype Association with Delayed AIDS Progression in African Women, A. O. Anzala, T. B. Ball, T. Rostron, Stephen J. O'Brien, F. A. Plummer, S. L. Rowland-Jones, and University of Nairobi Collaboration for HIV Research

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b→Sγ Constraints on the Minimal Supergravity Model with Large tanβ, Howard Baer, Michal Brhlik, Diego Castano, and Xerxes Tata

Distribution of D1S80 Alleles in the Jordanian Population, K. Balamurugan, H. Abdel-Rehman, George Duncan, B. Budowle, S. Anderson, J. Macechko, and Mohammed Tahir