CNSO Faculty Articles
Submissions from 2003
Reviewed Work(s): Electronic Tagging and Tracking in Marine Fisheries., David W. Kerstetter
Use of Pop-up Satellite Archival Tags to Demonstrate Survival of Blue Marlin (Makaira nigricans) Released from Pelagic Longline Gear, David W. Kerstetter, Brian E. Luckhurst, Eric Prince, and John E. Graves
An Annotated Checklist and Key to the Crinoidea of Guam and the Commonwealth of the Northern Marianas Islands, Lisa Kirkendale and Charles G. Messing
Mapping of 53 Loci in American Mink (Mustela vison), S. B. Kuznetsov, N. M. Matveeva, William J. Murphy, Stephen J. O'Brien, and O. L. Serov
Access of antibody molecules to the conserved coreceptor binding site on glycoprotein gp120 is sterically restricted on primary human immunodeficiency virus type 1, A. F. Labrijn, P. Poignard, Aarti Raja, M. B. Zwick, K. Delgado, M. Franti, J. Binley, V. Vivona, C. Grundner, C. C. Huang, M. Venturi, C. J. Petropoulos, T. Wrin, D. S. Dimitroy, J. Robinson, P. D. Kwong, R. T. Wyatt, J. Sodroski, and D. R. Burton
Episodic Nutrient Transport to Florida Coral Reefs, James J. Leichter, Hannah L. Stewart, and Steven Miller
Automated Single-Strand Conformation Polymorphism Reveals Low Diversity of a Major Histocompatibility Complex Class II Gene in the Threatened New Zealand Sea Lion, G. M. Lento, C. S. Baker, Victor David, Naoya Yuhki, N. J. Gales, and Stephen J. O'Brien
Association of Polymorphisms in Human Leukocyte Antigen Class I and Transporter Associated with Antigen Processing Genes with Resistance to Human Immunodeficiency Virus Type 1 Infection, Chenglong Liu, Mary Carrington, Richard A. Kaslow, Xiaojiang Gao, Charles Rinaldo, Lisa Jacobson, Joseph Margolick, John Phair, Stephen J. O'Brien, and Roger Detels
Status of Coral Reefs of Little Cayman, Grand Cayman and Cayman Brac, British West Indies, in 1999 and 2000 (Part 1: Stony Corals and Algae), Carrie Manfrino, Bernhard Riegl, Jerome L. Hall, and Robert Graifman
Radiation Hybrid Mapping of 304 Novel Microsatellites in the Domestic Cat Genome, Marilyn Menotti-Raymond, V. A. David, R. Agarwala, Alejandro A. Schaffer, R. Stephens, Stephen J. O'Brien, and W. J. Murphy
Second-Generation Integrated Genetic Linkage/Radiation Hybrid Maps of the Domestic Cat (Felis catus), Marilyn Menotti-Raymond, V. A. David, Z. Q. Chen, K. A. Menotti, S. Sun, Alejandro A. Schaffer, R. Agarwala, James F. Tomlin, Stephen J. O'Brien, and William J. Murphy
Quantitative Polymerase Chain Reaction-based Assay for Estimating DNA Yield Extracted from Domestic Cat Specimens, Marilyn Menotti-Raymond, Victor David, Leslie Wachter, Naoya Yuhki, and Stephen J. O'Brien
Three New Species of Comasteridae Echinodermata, Crinoidea from the Tropical Western Pacific, Charles G. Messing
Unique Morphology in the Living Bathyal Feather Star, Atelecrinus (Echinodermata: Crinoidea), Charles G. Messing
MCP-1-MCP-3–Eotaxin Gene Cluster Influences HIV-1 Transmission, William Modi, James J. Goedert, Steffanie A. Strathdee, Susan Buchbinder, Roger Detels, Sharyne Donfield, Stephen J. O'Brien, and Cheryl Winkler
Haplotype Diversity in the Interleukin-4 Gene is Not Associated with HIV-1 transmission and AIDS Progression, William Modi, Thomas R. O'Brien, David Vlahov, Susan Buchbinder, Edward Gomperts, John Phair, Stephen J. O'Brien, and Cheryl Winkler
Pavements of Siderastrea radians on Cape Verde Reefs, Chris S. Moses, Kevin P. Helmle, Peter K. Swart, Richard E. Dodge, and S. E. Merino
Spatial Patterns and Ecology of Benthic Communities on a High-Latitude South Florida (Broward County, USA) Reef System, Ryan P. Moyer, Bernhard Riegl, Kenneth Banks, and Richard E. Dodge
Reconstructing the Genomic Architecture of Mammalian Ancestors Using Multispecies Comparative Maps, William J. Murphy, Guillaume Bourque, Glenn Tesler, Pavel Pevzner, and Stephen J. O'Brien
The Origin of Human Chromosome 1 and its Homologs in Placental Mammals, William J. Murphy, Lutz Fronicke, Stephen J. O'Brien, and Roscoe Stanyon
Disorder Characterization of Oxide/Silicon Interfaces from I-V Curves, Louis R. Nemzer and Fredy R. Zypman
A Dog's Breakfast?, Stephen J. O'Brien and William J. Murphy
Vertical Versus Horizontal Growth Strategies of Coral Frameworks (Tulamben, Bali, Indonesia), W. E. Piller and Bernhard Riegl
Hypothesis-based Restoration Study For Mitigation of a Damaged SE Florida Coral Reef: A Work in Progress, T. Patrick Quinn, E. A. Glynn, Richard E. Dodge, Kenneth Banks, L. E. Fisher, and Richard E. Spieler
Interaction of HIV reverse transcriptase with structures mimicking recombination intermediates, Aarti Raja, J. Jeffrey, and J. J. DeStefano
Daptomycin. Fresh from the Pipeline, Aarti Raja, J. LaBonte, J. Lebbos, and P. Kirkpatrick
Atazanavir Sulfate. Fresh from the Pipeline, Aarti Raja, J. Lebbos, and P. Kirkpatrick
CD4 binding site antibodies inhibit human immunodeficiency virus (HIV-1) gp120 envelope glycoprotein interaction with CCR5, Aarti Raja, Venturi Miro, Kwong Peter, and J. Sodroski
Climate Change and Coral Reefs: Different Effects in Two High-Latitude Areas (Arabian Gulf, South Africa), Bernhard Riegl
Halofolliculina Skeleton Eroding Band (SEB): A Coral Disease with Fossilization Potential?, Bernhard Riegl and Arnfried Antonius
Assessment of the Coral Reefs of the Turks and Caicos Islands (Part 1: Stony Corals and Algae), Bernhard Riegl, Carrie Manfrino, Casey Hermoyian, Marilyn Brandt, and Kaho Hoshino
Possible Refugia for Reefs in Times of Environmental Stress, Bernhard Riegl and Werner Piller
Emissions of Trace Gases and Particles From Savanna Fires in Southern Africa, Parikhit Sinha, Peter V. Hobbs, Robert J. Yokelson, Isaac T. Bertschi, Donald R. Blake, Isobel J. Simpson, Song Gao, Thomas W. Kirchstetter, and Tihomir Novakov
Distributions of Trace Gases and Aerosols During the Dry Biomass Burning Season in Southern Africa, Parikhit Sinha, Peter V. Hobbs, Robert J. Yokelson, Donald R. Blake, Song Gao, and Thomas W. Kirchstetter
Polyketide Synthase Genes from Marine Dinoflagellates, R. V. Snyder, P. D. L. Gibbs, A. Palacios, L. Abiy, R. Dickey, Jose V. Lopez, and K. S. Rein
Observation of Wave-Enhanced Turbulence in the Near-Surface Layer of the Ocean During TOGA COARE, Alexander Soloviev and Roger Lukas
Energetic Baroclinic Super-Tidal Oscillations on the Southeast Florida shelf, Alexander Soloviev, Mark E. Luther, and Robert H. Weisberg
Coastal Observatory Investigates Energetic Current Oscillations on Southeast Florida Shelf, Alexander Soloviev, Rebekah J. Walker, Robert H. Weisberg, and Mark E. Luther
Placental Mammal Diversification and the Cretaceous-Tertiary Boundary, Mark S. Springer, William J. Murphy, Eduardo Eizirik, and Stephen J. O'Brien
Structural rRNA Characters Support Monophyly of Raptorial Limbs and Paraphyly of Limb Specialization in Water Fleas, Timothy D. Swain and Derek J. Taylor
Reproductive Status of Endemic Felid Species in Latin American Zoos and Implications for Ex Situ Conservation, William Swanson, Warren E. Johnson, Richard Cambre, S. Citino, K. B. Quigley, Dulce Brousset, R. N. Morais, N. Moreira, Stephen J. O'Brien, and David E. Wildt
Genetic Variation of the Scleractinian Coral Stylophora pistillata, from Western Pacific Reefs, M. Takabayashi, D. Carter, Jose V. Lopez, and O. Hoegh-Guldberg
Incertae sedis no more: the phylogenetic affinity of Helicosporidia, Aurelien Tartar and D. G. Bouncias
Comparison of plastid 16S rDNA (rrn16) genes from Helicosporidium spp.: evidence supporting the reclassification of Helicosporidia as green algae (Chlorophyta), Aurelien Tartar, Drion G. Bouncias, James J. Becnel, and Byron J. Adams
Nuclear Gene Sequences Confirm an Ancient Link Between New Zealand's Short-Tailed Bat and South American Noctilionoid Bats, Emma C. Teeling, Ole Madsen, William J. Murphy, Mark S. Springer, and Stephen J. O'Brien
Comprehensive Analysis of Class I and Class II HLA Antigens and Chronic Hepatitis B Virus Infection, Chloe L. Thio, David L. Thomas, Peter Karacki, Xiaojiang Gao, Darlene Marti, Richard A. Kaslow, James J. Goedert, Margaret Hilgartner, Steffanie A. Strathdee, Priya Duggal, Stephen J. O'Brien, Jacquie Astemborski, and Mary Carrington
Applying Molecular Genetic Tools to the Conservation and Action Plan for the Critically Endangered Far Eastern Leopard (Panthera pardus orientalis), Olga Uphyrkina and Stephen J. O'Brien
High-Latitude Acropora cervicornis Thickets Off Fort Lauderdale, Florida, USA, Bernardo Vargas-Ángel, James Darwin Thomas, and S. Michael Hoke
SFOMC: A successful navy and academic partnership providing sustained ocean observation capabilities in the Florida straits, William Venezia, William Baxley, Peter Tatro, Manhar Dhanak, Rick Driscoll, Pierre Philippe Beaujean, Steven Shock, Stewart Glegg, Edgar An, Mark Luther, Bob Weisberg, Harry DeFerrari, Neil Williams, Hien Nguyen, Nick Shay, John Van Leer, Richard Dodge, Dave Gilliam, Alexander Soloviev, Shirley Pomponi, Michael Crane, and Kevin Carter
Phytoplankton Response to Intrusions of Slope Water on the West Florida Shelf: Models and Observations, John J. Walsh, Robert H. Weisberg, Dwight A. Dieterle, Ruoying He, Brian P. Darrow, Jason K. Jolliff, Kristen M. Lester, Gabriel A. Vargo, Gary J. Kirkpatrick, Kent A. Fanning, Tracey Sutton, Ann E. Jochens, Douglas C. Biggs, Bisman Nababan, Chuanmin Hu, and Frank E. Muller-Karger
Comparative Genome Organization of Human, Murine, and Feline MHC Class II Region, Naoya Yuhki, Thomas W. Beck, Robert M. Stephens, Yoko Nishigaki, Kymberly Newmann, and Stephen J. O'Brien
Submissions from 2002
Special Issue of Coral Reefs, on Remote Sensing of Coral Reefs, Serge Andrefouet and Bernhard Riegl
Modulating Influence on HIV/Aids by Interacting RANTES Gene Variants, Ping An, George W. Nelson, Lihua Wang, Sharyne Donfield, James J. Goedert, John Phair, David Vlahov, Susan Buchbinder, William L. Farrar, William Modi, Stephen J. O'Brien, and Cheryl Winkler
Feline Immunodeficiency Virus Integration in B-Cell Lymphoma Identifies a Candidate Tumor Suppressor Gene on Human Chromosome 15q151, Julia Beatty, Anne Terry, Julie MacDonald, Elizabeth Gault, Stanley Cevario, Stephen J. O'Brien, Ewan Cameron, and James C. Neil
Characteristics of Shark Bycatch Observed on Pelagic Longlines Off the Southeastern United States, 1992-2000, Lawrence R. Beerkircher, Enric Cortes, and Mahmood S. Shivji
On Quadrature Rules Associated with Appell Polynomials, Gabriella Bretti, Matthew He, and Paolo E. Ricci
The MeowPlex: A New DNA Test Using Tetranucleotide STR Markers for the Domestic Cat, John M. Butler, Victor A. David, Stephen J. O'Brien, and Marilyn Menotti-Raymond
Density, Spatial Distribution and Size Structure of Sea Urchins in Florida Keys Coral Reef and Hard-Bottom Habitats, Mark Chiappone, Dione W. Swanson, and Steven Miller
Large-Scale Surveys on the Florida Reef Tract Indicate Poor Recovery of the Long-Spined Sea Urchin Diadema antillarum, Mark Chiappone, Dione W. Swanson, Steven Miller, and S. G. Smith
Occurrence and Biological Impacts of Fishing Gear and Other Marine Debris in the Florida Keys, Mark Chiappone, A. White, Dione W. Swanson, and Steven Miller
Patterns of Molecular Genetic Variation Among African Elephant Populations, Kenine E. Comstock, Nicholas Georgiadis, Jill Pecon-Slattery, Alfred L. Roca, Elaine A. Ostrander, Stephen J. O'Brien, and Samuel K. Wasser
Mmu 16- Comparative Genomic Highlights, Neal G. Copeland, Nancy A. Jenkins, and Stephen J. O'Brien
Balanced Polymorphism Selected by Genetic Versus Infectious Human Disease, Michael Dean, Mary Carrington, and Stephen J. O'Brien
Genomic Microsatellites as Evolutionary Chronometers: A Test in Wild Cats, Carlos A. Driscoll, Marilyn Menotti-Raymond, George Nelson, David Goldstein, and Stephen J. O'Brien
The Bent Metallocene Geometries of Potassium Peralkyl Cyclopentadienyl THF Solvates: Monosolvated [(THF)K(µ-C5Me5)]n, Disolvated [(THF)2K(µ-C5Me5)]n and the Tethered Olefin Complex [(THF)K(μ-C5Me4SiMe2CH2CH=CH2)]n, William J. Evans, Jason C. Brady, Cy H. Fujimoto, Dimitri Giarikos, and Joseph W. Ziller
Direct Synthesis of Heterometallic Europium/Barium Complexes: H2[Eu2Ba6O2(OiPr)16(THF)4] and EuBa2(OC6H4Me-4)7(diglyme)2(DME), William J. Evans, Dimitri Giarikos, Michael A. Greci, and Joseph W. Ziller
Stereoselective Synthesis of Some Novel Heterocyclic Estrone Derivatives by Intramolecular 1,3-Dipolar Cycloaddition, Eva Frank, Janos Wolfling, Beatrix Aukszi, Veronica Konig, Thomas R. Schneider, and Gyula Schneider
Effects of a Decrease in Downwelling Irradiance on the Daytime Vertical Distribution Patterns of Zooplankton and Micronekton, Tamara M. Frank and Edith A. Widder
Measurements of Selected Dicarboxylic Acids in Marine Cloud Water, Dean A. Hegg, Song Gao, and Haflidi Jonsson
Differential Equation of Appell Polynomials Via the Factorization Method, Matthew He and Paolo E. Ricci
Information entropy of orthogonal, Matthew He and P. E. Ricci
Fibonacci-Type Polynomials as a Trajectory of a Discrete Dynamical System, Matthew He, Davis P. Simon, and Paolo E. Ricci
Functional morphology of coral shape and passive hydrodynamic self-righting in recent Manicina areolata, Bernhard Hubmann, Werner E. Piller, and Bernhard Riegl
Human Immunodeficiency Virus Type 1 (HIV-1)-Specific CD8+-T-Cell Responses for Groups of HIV-1-Infected Individuals with Different HLA-B*35 Genotypes, Xia Jin, Xiaojiang Gao, Murugappan Ramanathan Jr., Geoffrey R. Deschenes, George W. Nelson, Stephen J. O'Brien, James J. Goedert, David D. Ho, Thomas R. O'Brien, and Mary Carrington
Characteristics of Active Galactic Nuclei in the Ultraviolet, Stefan Kautsch and Werner W. Zeilinger
3-Methoxy-1'-phenyl-4'[beta],5-dihydro-1H-pyrazolo[4',3':16,17]estra-1,3,5(10)-triene, Veronica Konig, Thomas R. Schneider, E. Frank, Beatrix Aukszi, Gyula Schneider, and Janos Wolfling
Characterization of Genetic Markers for In Vitro Cell Line Identification of the Marine Sponge Axinella corrugata, Jose V. Lopez, C. L. Peterson, Robin Willoughby, A. E. Wright, E. Enright, S. Zoladz, John K. Reed, and Shirley A. Pomponi
Detection of the toxin Hirsutellin A from Hirsutella thompsonii, S. Maimala, Aurelien Tartar, Drion G. Boucias, and A. Chandrapatya
Eighteen Polymorphic Microsatellite Markers for the Highly Endangered Spanish Imperial Eagle (Aquila adalberti) and Related Species, Begoña Martinez-Cruz, Victor A. David, Jose A. Godoy, Juan J. Negro, Stephen J. O'Brien, and Warren E. Johnson
Epistatic Interaction Between KIR3DS1 and HLA-B Delays the Progression to AIDS, Maureen P. Martin, Xiaojiang Gao, Jeong-Hee Lee, George W. Nelson, Roger Detels, James J. Goedert, Susan Buchbinder, Keith Hoots, David Vlahov, John Trowsdale, Michael Wilson, Stephen J. O'Brien, and Mary Carrington
Sequencing the Genome of the Domestic Cat Felis catus, Stephen J. O'Brien, Eric S. Lander, M. E. Haskins, Urs Giger, Niels C. Pederson, David E. Wildt, William J. Murphy, Naoya Yuhki, and Marilyn Menotti-Raymond
The Feline Genome Project, Stephen J. O'Brien, Marilyn Menotti-Raymond, William J. Murphy, and Naoya Yuhki
Faecal Genetic Analysis to Determine the Presence and Distribution of Elusive Carnivores: Design and Feasibility for the Iberian Lynx, F. Palomares, Jose A. Godoy, A. Piriz, Stephen J. O'Brien, and Warren E. Johnson
Effects of the 1996 and 1998 Positive Sea-Surface Temperature Anomalies on Corals, Coral Diseases and Fish in the Arabian Gulf (Dubai, UAE), Bernhard Riegl
Naked Amoebae of the Salton Sea, Andrew Rogerson and Gwen Hauer
Artificial Keys to the Genera of Living Stalked Crinoids (Echinodermata), Michel Roux, Charles G. Messing, and Nadia Améziane
Air-Sea Gas Exchange: Cool Skin and Gas Transfer Velocity in the North Atlantic Ocean During GasEx-98, P. Schlussel and Alexander Soloviev
Evaluating the use of roving diver and transect surveys to assess the coral reef fish assemblage off southeastern Hispaniola, Emily F. Schmitt Lavin, Robert D. Sluka, and Kathleen M. Sullivan-Sealey
Very High-Frequency Radar Mapping of Surface Currents, Lynn K. Shay, Thomas M. Cook, Hartmut Peters, Arthur Mariano, Robert H. Weisberg, P. Edgar An, Alexander Soloviev, and Mark E. Luther
HIV-1 Infection in Individuals With the CCR5-Δ32/Δ32 Genotype: Acquisition of Syncytium-Inducing Virus at Seroconversion, Haynes W. Sheppard, Nelson L. Michael, Stephen J. O'Brien, Michael Dean, Mary Carrington, Dale Dondero, and Susan Buchbinder
Genetic Identification of Pelagic Shark Body Parts for Conservation and Trade Monitoring, Mahmood S. Shivji, Shelley C. Clarke, Melissa Pank, Lisa Natanson, Nancy Kohler, and GlaxoSmithKline Pharmaceuticals
Sharp Frontal Interfaces in the Near-Surface Layer of the Tropical Ocean, Alexander Soloviev, Roger Lukas, and Hiroshi Matsuura
Phylogenetic analysis identifies the invertebrate pathogen Helicosporidium sp. as a green alga (Chlorophyta), Aurelien Tartar, Drion G. Boucias, Byron J. Adams, and James J. Becnel
HLA-Cw*04 and Hepatitis C Virus Persistence, Chloe L. Thio, Xiaojiang Gao, James J. Goedert, David Vlahov, Kenrad E. Nelson, Margaret Hilgartner, Stephen J. O'Brien, Peter Karacki, Jacquie Astemborski, Mary Carrington, and David L. Thomas
The Importance of Assessing Effect Modification When Asserting Racial Differences in Associations Between Human Leukocyte Antigen Class II Alleles and Hepatitis C Virus Outcomes, Chloe L. Thio, Stephen J. O'Brien, and Mary Carrington
Conservation Genetics of the Far Eastern Leopard (Panthera pardus orientalis), Olga Uphyrkina, Dale Miquelle, Howard Quigley, Carlos A. Driscoll, and Stephen J. O'Brien
Nonpathogenic Lion and Puma Lentiviruses Impart Resistance to Superinfection by Virulent Feline Immunodeficiency Virus, Sue VandeWoude, Catherine A. Hageman, Stephen J. O'Brien, and Edward A. Hoover
Sexual Reproduction of Acropora cervicornis in Nearshore Waters Off Fort Lauderdale, Florida, USA, Bernardo Vargas-Ángel and James Darwin Thomas
In Situ Observations on Three Species of Large-Finned Deep-Sea Squids, M. Vecchione, C. F. E. Roper, Edith A. Widder, and Tamara M. Frank