CNSO Faculty Articles
Submissions from 2005
Spatial and Temporal Dynamics of Arabian Gulf Coral Assemblages Quantified from Remote-Sensing and in situ Monitoring Data, Samuel J. Purkis and Bernhard Riegl
Remote Sensing of Geomorphology and Facies Patterns on a Modern Carbonate Ramp (Arabian Gulf, Dubai, U.A.E.), Samuel J. Purkis, Bernhard Riegl, and Serge Andrefouet
Effects of Nutrient Enrichment and Elevated CO2 Partial Pressure on Growth Rate of Atlantic Scleractinian Coral Acropora cervicornis, Dorothy-Ellen A. Renegar and Bernhard Riegl
Distribution and Seasonal Biomass of Drift Macroalgae in the Indian River Lagoon (Florida, USA) Estimated with Acoustic Seafloor Classification (QTCView, Echoplus), Bernhard Riegl, Ryan P. Moyer, Lori J. Morris, Robert W. Virnstein, and Samuel J. Purkis
Detection of Shallow Subtidal Corals from IKONOS Satellite and QTC View (50,200 kHz) Single-Beam Sonar Data (Arabian Gulf; Dubai, UAE), Bernhard Riegl and Samuel J. Purkis
Cytonuclear Genomic Dissociation in African Elephant Species, Alfred L. Roca, Nicholas Georgiadis, and Stephen J. O'Brien
Insertional Polymorphisms of Endogenous Feline Leukemia Viruses, Alfred L. Roca, William G. Nash, Joan C. Menninger, William J. Murphy, and Stephen J. O'Brien
Genomic Inferences from Afrotheria and the Evolution of Elephants, Alfred L. Roca and Stephen J. O'Brien
The Case for Selection at CCR5-Δ32, Pardis Sabeti, Emily C. Walsh, Stephen F. Schaffner, Patrick Varilly, Ben Fry, Holli Hutcheson, Mike Cullen, Tarjei S. Mikkelsen, Jessica Roy, Nick Patterson, Richard Cooper, David Reich, David Altshuler, Stephen J. O'Brien, and Eric S. Lander
Tyrosinase and Tyrosinase Related Protein 1 Alleles Specify Domestic Cat Coat Color Phenotypes of the albino and brown Loci, A. Schmidt-Kunzel, Eduardo Eizirik, Stephen J. O'Brien, and Marilyn Menotti-Raymond
A Molecular Systematic Survey of Cultured Microbial Associates of Deep-Water Marine Invertebrates, Karen S. Sfanos, Dedra K. Harmody, Phat Dang, Angela Ledger, Shirley A. Pomponi, Peter McCarthy, and Jose V. Lopez
Structural Attributes Of Artificial Reefs And Associated Fish Assemblages, Robin L. Sherman, P. Arena, P. Quinn, and R. E. Spieler
Genetic Profiling Reveals Illegal International Trade in Fins of the Great White Shark, Carcharodon carcharias, Mahmood S. Shivji, Demian D. Chapman, Ellen K. Pikitch, and Paul W. Raymond
Mapping by Admixture Linkage Disequilibrium: Advances, Limitations and Guidelines, Michael W. Smith and Stephen J. O'Brien
Localization of Polyketide Synthase Encoding Genes to the Toxic Dinoflagellate Karenia brevis, Richard V. Snyder, Maria A. Guerrero, Christopher D. Sinigalliano, Jamie Winshell, Roberto Perez, Jose V. Lopez, and Kathleen S. Rein
The Isotopic Composition of Respired Carbon Dioxide in Scleractinian Corals: Implications for Cycling of Organic Carbon in Corals, Peter Koenraad Swart, Alina Szmant, James W. Porter, Richard E. Dodge, Jennifer I. Tougas, and John R. Southam
Differential expression of chitin synthase (CHS) and glucan synthase (FKS) genes correlates with the formation of a modified, thinner cell wall in in vivo-produced Beauveria bassiana cells, Aurelien Tartar, A. M. Shapiro, D. W. Scharf, and Drion G. Boucias
A Molecular Phylogeny for Bats Illuminates Biogeography and the Fossil Record, Emma C. Teeling, Mark S. Springer, Ole Madsen, Paul Bates, Stephen J. O'Brien, and William J. Murphy
Mannose Binding Lectin Genotypes Influence Recovery from Hepatitis B Virus Infection, Chloe L. Thio, Timothy L. Mosbruger, Jacquie Astemborski, Spencer Greer, Gregory D. Kirk, Stephen J. O'Brien, and David L. Thomas
Seroprevalence and Genomic Divergence of Circulating Strains of Feline Immunodeficiency Virus Among Felidae and Hyaenidae Species, Jennifer L. Troyer, Jill Pecon-Slattery, Melody E. Roelke, Warren E. Johnson, Sue VandeWoude, Nuria Vazquez-Salat, Meredith Brown, Laurence Frank, Rosie Woodroffe, Christiaan Winterbach, Hanlie Winterbach, Graham Hemson, Mitchell Bush, Kathleen A. Alexander, Eloy Revilla, and Stephen J. O'Brien
Environmental Correlates of Cetacean Mass Stranding Sites in Florida, Rebekah J. Walker, Edward O. Keith, Alexander E. Yankovsky, and Daniel K. Odell
Evidence for High Molecular Weight Nitrogen-Containing Organic Salts in Urban Aerosols, Xiaofei Wang, Song Gao, Xin Yang, Hong Chen, Jianmin Chen, Guoshun Zhuang, Jason D. Surratt, Man Nin Chan, and John H. Seinfeld
Farfield Tracing of a Point Source Discharge Plume in the Coastal Ocean Using Sulfur Hexafluoride, Rik Wanninkhof, K. M. Sullivan, W. Paul Dammann, John Proni, Frederick Bloetscher, Alexander Soloviev, and Thomas P. Carsey
VSV Disrupts the Rae1/mrnp41 mRNA Nuclear Export Pathway, Paula A. Faria Waziry, Papia Chakraborty, Agata Levay, Glen N. Barber, Heather J. Ezelle, Jost Enninga, Carlos Arana, Jan van Deursen, and Beatriz M. A. Fontoura
Molecular Evidence for Multiple Lineages in the Gorgonian Family Plexauridae (Anthozoa: Octocorallia), H. H. Wirshing, Charles G. Messing, C. J. Douady, J. K. Reed, M. J. Stanhope, and Mahmood S. Shivji
A Comparison of Diets and Water Agitation Methods for Larval Culture of the Edible Sea Urchin, Tripneustes ventricosus (Echinodermata: Echinoidea), Ray Wolcott and Charles G. Messing
Submissions from 2004
Remote Sensing: A Key Tool for Interdisciplinary Assessment of Coral Reef Processes, Serge Andrefouet and Bernhard Riegl
APOBEC3G Genetic Variants and Their Influence on the Progression to AIDS, Ping An, Gabriela Bleiber, Priya Duggal, George Nelson, Margaret May, Bastien Mangeat, Irene Alobwede, Didier Trono, David Vlahov, Sharyne Donfield, James J. Goedert, John Phair, Susan Buchbinder, Stephen J. O'Brien, Amalio Telenti, and Cheryl Winkler
Characterization of the Marine Fish Assemblage Associated with the Nearshore Hardbottom of Broward County, Florida, USA, Robert M. Baron, Lance K. B. Jordan, and Richard E. Spieler
Prevalence and Differential Host‐Specificity of Two Avian Blood Parasite Genera in the Australo‐Papuan Region, Jon S. Beadell, Eben Gering, Jeremy Austin, John P. Dumbacher, Mike A. Peirce, Thane K. Pratt, Carter T. Atkinson, and Robert C. Fleischer
The phosphoprotein (P) and L binding sites reside in the N-terminus of the L subunit of the measles virus RNA polymerase, B. Cevik, D. Holmes, Emmanuel George Vrotsos, J. Feller, S. Smallwood, and S. Moyer
Predominance of Genetic Monogamy by Females in a Hammerhead Shark, Sphyrna tiburo: Implications for Shark Conservation, Demian D. Chapman, Paulo A. Prodohl, James Gelsleichter, Charles A. Manire, and Mahmood S. Shivji
Seroprevalence of Bartonella infection in American free-ranging and captive pumas (Felis concolor) and bobcats (Lynx rufus), Bruno B. Chomel, Yoko Kikuchi, Janice S. Martenson, Melodie E. Roelke-Parker, Chao Chin Chang, Rickie W. Kasten, Janet E. Foley, John Laudre, Kerry Murphy, Pamela K. Swift, Vicki L. Kramer, and Stephen J. O'Brien
Changes in Motoric, Exploratory, and Emotional Behaviours and Neuronal Acetylcholine Content and 5-HT Turnover in Histidine Decarboxylase-KO Mice, Ekrem Dere, Maria A. De Souza-Silva, Richard E. Spieler, J. S. Lin, H. Ohtsu, Helmut L. Haas, and Joseph P. Huston
Fishes of the Eastern Ross Sea, Antarctica, Joseph Donnelly, Joseph J. Torres, Tracey Sutton, and Christina Simoniello
The Application of Peptide Nucleic Acid Probes for Rapid Detection and Enumeration of Eubacteria, Staphylococcus aureus and Pseudomonas aeruginosa in Recreational Beaches of S. Florida, Nwadiuto Esiobu, Renuka Mohammed, Andrea Echeverry, Melissa Green, Tonya Davidian Bonilla, Aaron Hartz, Donald S. McCorquodale Jr., and Andrew Rogerson
Chloride Effects in Lanthanide Carboxylate Based Isoprene Polymerization, William J. Evans and Dimitri Giarikos
Utility of Anhydrous Neodymium Nitrate as a Precursor to Extended Organoneodymium Nitrate Networks, William J. Evans, Dimitri Giarikos, Penny S. Workman, and Joseph W. Ziller
Expanding Dinitrogen Reduction Chemistry to Trivalent Lanthanides via the LnZ3/Alkali Metal Reduction System: Evaluation of the Generality of Forming Ln2(μ-η2:η2-N2) Complexes via LnZ3/K, William J. Evans, David S. Lee, Daniel B. Rego, Jeremy M. Perotti, Stosh A. Kozimor, Ericka K. Moore, and Joseph W. Ziller
Low-Molecular-Weight and Oligomeric Components in Secondary Organic Aerosol from the Ozonolysis of Cycloalkenes and α-Pinene, Song Gao, Melita D. Keywood, Nga L. Ng, Jason D. Surratt, Varuntida Varutbangkul, Roya Bahreini, Richard C. Flagan, and John H. Seinfeld
Particle Phase Acidity and Oligomer Formation in Secondary Organic Aerosol, Song Gao, Nga L. Ng, Melita D. Keywood, Varuntida Varutbangkul, Roya Bahreini, Athanasios Nenes, Jiwen He, Kee Y. Yoo, J. L. Beauchamp, Robert P. Hodyss, Richard C. Flagan, and John H. Seinfeld
Taxonomists and the CBD, R. Geeta, Andre Levy, J. Matthew Hoch, Melissa Mark, Quentin D. Wheeler, Peter H. Raven, and Edward O. Wilson
A Rapid Method for Counting Nucleated Erythrocytes on Stained Blood Smears by Digital Image Analysis, Eben Gering and Carter T. Atkinson
Genetic Code, Attributive Mappings and Stochastic Matrices, Matthew He
Genetic Code, Hamming Distance and Stochastic Matrices, Matthew He, Sergei V. Petoukhov, and Paolo E. Ricci
Differential equations of some classes of special functions via the factorization method, Matthew X. He and Paolo E. Ricci
D1S80 Single-Locus Discrimination Among African Populations, Rene J. Herrera, Leslie R. Adrien, Luis M. Ruiz, Nahir Y. Sanabria, and George Duncan
Phylogenetic and Phylogeographic Analysis of Iberian Lynx Populations, Warren E. Johnson, Jose A. Godoy, F. Palomares, M. Delibes, M. Fernandes, E. Revilla, and Stephen J. O'Brien
Development and Characterization of Microsatellite Loci in the Endangered Oyster Mussel Epioblasma capsaeformis (Bivalvia: Unionidae), Jess W. Jones, Melanie Culver, Victor David, Jennifer Struthers, Nathan A. Johnson, Richard J. Neves, Stephen J. O'Brien, and Eric M. Hallerman
MICA and Recovery from Hepatitis C Virus and Hepatitis B Virus Infections, Peter Karacki, Xiaojiang Gao, Chloe L. Thio, D. L. Thomas, James J. Goedert, David Vlahov, Richard A. Kaslow, Steffanie A. Strathdee, Margaret Hilgartner, Stephen J. O'Brien, and Mary Carrington
Vanishing Horizontal Sea Surface Temperature Gradients at Low Wind Speeds, Kristina B. Katsaros and Alexander Soloviev
Evidence of Shark Predation and Scavenging on Fishes Equipped with Pop-up Satellite Archival Tags, David W. Kerstetter, J. Polovina, and John E. Graves
HLA and NK Cell Inhibitory Receptor Genes in Resolving Hepatitis C Virus Infection, Salim I. Khakoo, Chloe L. Thio, Maureen P. Martin, Collin R. Brooks, Xiaojiang Gao, Jacquie Astemborski, Jie Cheng, James J. Goedert, David Vlahov, Margaret Hilgartner, Steven Cox, Ann-Margeret Little, Graeme J. Alexander, Matthew E. Cramp, Stephen J. O'Brien, William M. C. Rosenberg, David L. Thomas, and Mary Carrington
Seroprevalence of Toxoplasma gondii in American Free-Ranging or Captive Pumas (Felis concolor) and Bobcats (Lynx rufus), Yoko Kikuchi, B. B. Chomel, R. W. Kasten, Janice S. Martenson, Pamela K. Swift, and Stephen J. O'Brien
Infectious Diseases Updates, J. LaBonte, J. Lebbos, Aarti Raja, and P. Kirkpatrick
Identity Bases for Some Non-exact Varieties, Edmond W. H. Lee
Matrix Inequalities by Means of Embedding, Tian-Gang Lei, Ching-Wah Woo, and Fuzhen Zhang
Lack of Associations Between HLA Class II Alleles and Resistance to HIV-1 Infection Among White, Non-Hispanic Homosexual Men, Chenglong Liu, Mary Carrington, Richard A. Kaslow, Xiaojiang Gao, Charles Rinaldo, Lisa Jacobson, Joseph Margolick, John Phair, Stephen J. O'Brien, and Roger Detels
The Schur Complements of Generalized Doubly Diagonally Dominant Matrices, Jianzhou Liu, Yunqing Huang, and Fuzhen Zhang
The Perfect Microbial Symbiosis Hotel: Marine Sponges, Jose V. Lopez
Phylogeography and Genetic Ancestry of Tigers (Panthera tigris), Shu-Jin Luo, Jae-Heup Kim, Warren E. Johnson, Joelle van der Walt, Janice S. Martenson, Naoya Yuhki, Dale Miquelle, Olga Uphyrkina, John M. Goodrich, Howard Quigley, R. Tilson, Gerald Brady, Paolo Martelli, Vellayan Subramaniam, Charles McDougal, Sun Hean, Shi-Qiang Huang, Wenshi Pan, Ullas K. Karanth, Melvin Sunquist, James L. D. Smith, and Stephen J. O'Brien
Association of DC-SIGN Promoter Polymorphism with Increased Risk for Parenteral, but Not Mucosal, Acquisition of Human Immunodeficiency Virus Type 1 Infection, Maureen P. Martin, Michael M. Lederman, Holli B. Hutcheson, James J. Goedert, George W. Nelson, Yvette van Kooyk, Roger Detels, Susan Buchbinder, Keith Hoots, David Vlahov, Stephen J. O'Brien, and Mary Carrington
Prevalence of Bartonella Infection in Wild African Lions (Panthera leo) and Cheetahs (Acinonyx jubatus), S. Molia, B. B. Chomel, R. W. Kasten, C. M. Leutenegger, B. R. Steele, L. Marker, Janice S. Martenson, D. F. Keet, R. G. Bengis, R. P. Peterson, L. Munson, and Stephen J. O'Brien
Serosurvey of Viral Infections in Free-Ranging Namibian Cheetahs (Acinonyx jubatus), L. Munson, L. Marker, Edward Dubovi, Jennifer A. Spencer, J. F. Evermann, and Stephen J. O'Brien
Mammalian Phylogenomics Comes of Age, William J. Murphy, Pavel Pevzner, and Stephen J. O'Brien
Cats, Stephen J. O'Brien
Human Genes That Limit AIDS, Stephen J. O'Brien and George W. Nelson
Evaluating Association and Transmission of Eight Inflammatory Genes with Viliuisk Encephalomyelitis Susceptibility, T. K. Oleksyk, L. G. Goldfarb, T. Sivtseva, A. P. Danilova, V. L. Osakovsky, S. Shrestha, Stephen J. O'Brien, and M. W. Smith
Methods for High-Density Admixture Mapping of Disease Genes, Nick Patterson, Neil Hattangadi, Barton Lane, Kirk E. Lohmueller, David A. Hafler, Jorge R. Oksenberg, Stephen L. Hauser, MIchael W. Smith, Stephen J. O'Brien, David Altshuler, Mark J. Daly, and David Reich
Coronavirus Outbreak in Cheetahs: Lessons for SARS, A. J. Pearks Wilkerson, Emma C. Teeling, Jennifer L. Troyer, Gila Kahila Bar-Gal, Melody E. Roelke, Laurie Marker, Jill Pecon-Slattery, and Stephen J. O'Brien
Phylogenetic Assessment of Introns and SINEs Within the Y Chromosome Using the Cat Family Felidae as a Species Tree, Jill Pecon-Slattery, A. J. Pearks Wilkerson, William J. Murphy, and Stephen J. O'Brien
Integrating In Situ Reef-Top Reflectance Spectra with Landsat TM Imagery to Aid Shallow-Tropical Benthic Habitat Mapping, Samuel J. Purkis and R. Pasterkamp
Comparison of Computer-Assisted Instruction (CAI) versus Traditional Textbook Methods for Training in Abdominal Examination (Japanese Experience), A. K. Qayumi, Y. Kurihara, M. Imai, G. Pachev, H. Seo, Y. Hoshino, R. Cheifetz, K. Matsuura, M. Momoi, Mir Saleem, H. Lara-Guerra, Y. Miki, and Y. Kariya
Telithromycin. Fresh from the Pipeline, Aarti Raja, J. Lebbos, and P. Kirtpatrick
Mesozoic Origin for West Indian Insectivores, Alfred L. Roca, Gila Kahila Bar-Gal, Eduardo Eizirik, Kristofer M. Helgen, Roberto Maria, Mark S. Springer, Stephen J. O'Brien, and William J. Murphy
Genomically Intact Endogenous Feline Leukemia Viruses of Recent Origin, Alfred L. Roca, Jill Pecon-Slattery, and Stephen J. O'Brien
Phylogeography and Subspecies Assessment of Vicuñas in Chile and Bolivia Utilizing mtDNA and Microsatellite Markers: Implications for Vicuña Conservation and Management, Ronald J. Sarno, Lilian Villalba, Cristian Bonacic, Benito Gonzalez, Beatriz Zapata, David W. Macdonald, Stephen J. O'Brien, and Warren E. Johnson
Fraction of Cases of Acquired Immunodeficiency Syndrome Prevented by the Interactions of Identified Restriction Gene Variants, M. J. Silverberg, M. W. Smith, Joan S. Chmiel, Roger Detels, Joseph Margolick, Charles Rinaldo, Stephen J. O'Brien, and A. Muñoz
Emissions from Miombo Woodland and Dambo Grassland Savanna Fires, Parikhit Sinha, Peter V. Hobbs, Robert J. Yokelson, Donald R. Blake, Song Gao, and Thomas W. Kirchstetter
Nutrient and Growth Dynamics of Halimeda tuna on Conch Reef, Florida Keys: Possible Influence of Internal Tides on Nutrient Status and Physiology, Jennifer E. Smith, Celia M. Smith, Peter S. Vroom, Kevin L. Beach, and Steven Miller
A High-Density Admixture Map for Disease Gene Discovery in African Americans, MIchael W. Smith, Nick Patterson, J. A. Lautenberger, Ann L. Truelove, Gavin J. McDonald, Alicja Waliszewska, Andre A. Mignault, Zeng Yi, Guy de The, Myron Essex, Jean-Louis Sankale, Jason H. Moore, Kwabena Poku, John Phair, James J. Goedert, David Vlahov, Scott M. Williams, Sarah A. Tishkoff, Cheryl Winkler, Francisco M. De La Vega, Trevor Woodage, John J. Sninsky, David A. Hafler, David Altshuler, Dennis A. Gilbert, Stephen J. O'Brien, and David Reich
New Species of Eustomias (Teleostei: Stomiidae) from the Western North Atlantic, with a Review of the Subgenus Neostomias, Tracey Sutton and Karsten E. Hartel
A pilot-scale Expressed Sequence Tag analysis of Beauveria bassiana gene expression reveals a tripeptidyl peptidase that is differentially expressed in vivo, Aurelien Tartar and Drion G. Boucias
The non-photosynthetic, pathogenic green alga Helicosporidium sp. has retained a modified, functional plastid genome, Aurelien Tartar and Drion G. Boucias
An Analysis of Tumor Necrosis Factor α Gene Polymorphisms and Haplotypes with Natural Clearance of Hepatitis C Virus Infection, Chloe L. Thio, James J. Goedert, Timothy L. Mosbruger, David Vlahov, Steffanie A. Strathdee, Stephen J. O'Brien, Jacquie Astemborski, and D. L. Thomas
Cytotoxic T-Lymphocyte Antigen 4 Gene and Recovery from Hepatitis B Virus Infection, Chloe L. Thio, Timothy L. Mosbruger, Richard A. Kaslow, Christopher L. Karp, Steffanie A. Strathdee, David Vlahov, Stephen J. O'Brien, Jacquie Astemborski, and David L. Thomas
Patterns of Feline Immunodeficiency Virus Multiple Infection and Genome Divergence in a Free-Ranging Population of African Lions, Jennifer L. Troyer, Jill Pecon-Slattery, Melody E. Roelke, Lori Black, Craig Packer, and Stephen J. O'Brien
Detecting the Vanishing Populations of the Highly Endangered Darwin's Fox, Pseudalopex fulvipes, Carles Vila, Jennifer A. Leonard, J. A. Iriarte, Stephen J. O'Brien, Warren E. Johnson, and Robert K. Wayne
Chitinase gene of the dimorphic mycopathogen Nomuraea rileyi, R. Wattanalai, Drion G. Boucias, Aurelien Tartar, and C. Wiwat
Patterns of Ethnic Diversity Among the Genes That Influence AIDS, Cheryl Winkler, Ping An, and Stephen J. O'Brien
Dominant Effects of CCR2-CCR5 Haplotypes in HIV-1 Disease Progression, Cheryl Winkler, Houria Hendel, Mary Carrington, Michael W. Smith, George W. Nelson, Stephen J. O'Brien, John Phair, David Vlahov, Lisa Jacobson, Jay Rappaport, Alexandre Vasilescu, Sebastien Berlin-Maghit, Ping An, Wei Lu, Jean-Marie Andrieu, Francois Schachter, Amu Therwath, and Jean-Francois Zagury
The Skeleton Eroding Band Disease on Coral Reefs of Aqaba, Red Sea, Robert Winkler, Arnfried Antonius, and Dorothy-Ellen A. Renegar
Multiple Paternity and Reproductive Tactics of Free-Ranging American Minks, Mustela vison, Nobuyuki Yamaguchi, Ronald J. Sarno, Warren E. Johnson, Stephen J. O'Brien, and D. W. MacDonald
A Matrix Identity on the Schur Complement, Fuzhen Zhang
Submissions from 2003
Multi-Site Evaluation of IKONOS Data for Classification of Tropical Coral Reef Environments, Serge Andrefouet, Philip Kramer, Damaris Torres-Pulliza, Karen E. Joyce, Eric J. Hochberg, Rodrigo Garza-Perez, Peter J. Mumby, Bernhard Riegl, Hiroya Yamano, William H. White, Mayalen Zubia, John C. Brock, Stuart R. Phinn, Abdulla Naseer, Bruce G. Hatcher, and Frank E. Muller-Karger
A Tumor Necrosis Factor-α-Inducible Promoter Variant of Interferon-γ Accelerates CD4+ T Cell Depletion in Human Immunodeficiency Virus-1-Infected Individuals, Ping An, David Vlahov, Joseph Margolick, John Phair, Thomas R. O'Brien, J. A. Lautenberger, Stephen J. O'Brien, and Cheryl Winkler
A Monte Carlo Demographic Analysis of the Silky Shark (Carcharhinus falciformis): Implications of Gear Selectivity, Lawrence R. Beerkircher, Mahmood S. Shivji, and Enric Cortes
Circadian Variation of Brain Histamine in Goldfish, Tiffany A. Burns, Joseph P. Huston, and Richard E. Spieler