CNSO Faculty Articles
Submissions from 1998
Florida Coral Reef Damage from Nuclear Submarine Grounding and Proposed Restoration, Kenneth Banks, Richard E. Dodge (editor), Lou Fisher, David K. Stout, and Walter Jaap
Genetic Characterization of Canine Distemper Virus in Serengeti Carnivores, Margaret A. Carpenter, Max J. G. Appel, Melody E. Roelke-Parker, Linda Munson, Heribert Hofer, Marion East, and Stephen J. O'Brien
Phylogeographic Patterns of Feline Immunodeficiency Virus Genetic Diversity in the Domestic Cat, Margaret A. Carpenter, Eric W. Brown, D. W. MacDonald, and Stephen J. O'Brien
Cloning and Mapping of Cat (Felis catus) Immunoglobulin and T-Cell Receptor Genes, Kyu-Woan Cho, Hwa-Young Youn, Masaru Okuda, Hitoshi Satoh, Stanley Cevario, Stephen J. O'Brien, Toshihiro Watari, Hajime Tsujimoto, and Atsuhiko Hasegawa
Mesures directes et modélisation de la croissance rapide d'un crinoïde pédonculé bathyal au large des Bahamas (Direct Measurement and Inferred Model of Rapid Growth in a Bathyal Stalked Crinoid from Bahamas Islands), Jérôme David, Charles G. Messing, Tomasz K. Baumiller, Nadia Améziane, and Michel Roux
High fidelity of internal strand transfer catalyzed by human immunodeficiency virus reverse transcriptase, J. J. DeStefano, Ghosh Jhumka, Brinda Prasad, and Aarti Raja
Progression to AIDS, Sharyne Donfield, Henry S. Lynn, Margaret Hilgartner, Michael W. Smith, Michael Dean, Mary Carrington, Cheryl Winkler, and Stephen J. O'Brien
Phylogeographic Patterns and Evolution of the Mitochondrial DNA Control Region in Two Neotropical Cats (Mammalia, Felidae), Eduardo Eizirik, Sandro L. Bonatto, Warren E. Johnson, Peter G. Crawshaw Jr., Jean Christophe Vie, Dulce Brousset, Stephen J. O'Brien, and Francisco M. Salzano
Reproductive Accomodations for Gestation in the Atlantic Guitarfish, Rhinobatos lentiginosus, Rhinobatidae, William C. Hamlett, Matthew K. Hysell, John Galvin, and Richard E. Spieler
Distinctive Effects of CCR5, CCR2, and SDF1 Genetic Polymorphisms in AIDS Progression, Houria Hendel, N. Henon, Helene Lebuanec, Abderrahim Lachgar, H. Poncelet, Sophie Caillat-Zucman, Cheryl Winkler, Michael W. Smith, L. Kenefic, Stephen J. O'Brien, W. Lu, Jean-Marie Andrieu, Daniel Zagury, Francois Schachter, Jay Rappaport, and Jean-Francois Zagury
Midwater Fishes and Shrimps as Competitors and Resource Partitioning in Low Latitude Oligotrophic Ecosystems, T. L. Hopkins and Tracey Sutton
Tracking the Evolution of the Elusive Andean Mountain Cat (Oreailurus jacobita) from Mitochondrial DNA, Warren E. Johnson, Melanie Culver, J. A. Iriarte, Eduardo Eizirik, K. L. Seymour, and Stephen J. O'Brien
A New Coral Disease from the Southern Arabian Gulf, Jan L. Korrubel and Bernhard Riegl
Influence of the CCR2-V64I Polymorphism on Human Immunodeficiency Virus Type 1 Coreceptor Activity and on Chemokine Receptor Function of CCR2b, CCR3, CCR5, and CXCR4, Benhur Lee, Benjamin J. Doranz, Shalini Rana, Yanji Yi, Mario Mellado, Jose M. R. Frade, Carlos Martinez-A., Stephen J. O'Brien, Michael Dean, Ronald G. Collman, and Robert W. Doms
CXCR4 Polymorphisms and HIV-1 Pathogenesis, Maureen P. Martin, Mary Carrington, Michael Dean, Stephen J. O'Brien, Haynes W. Sheppard, Scott A. Wegner, and Nelson L. Michael
Genetic Acceleration of AIDS Progression by a Promoter Variant of CCR5, Maureen P. Martin, Michael Dean, Michael W. Smith, Cheryl Winkler, Bernard Gerrard, Nelson L. Michael, Benhur Lee, Robert W. Doms, Joseph Margolick, Susan Buchbinder, James J. Goedert, Thomas R. O'Brien, Margaret Hilgartner, David Vlahov, Stephen J. O'Brien, and Mary Carrington
Conditioned Place-Preference Analysis in the Goldfish with the H1 Histamine Antagonist Chlorpheniramine, Rosana Mattioli, Carrie A. Nelson, Joseph P. Huston, and Richard E. Spieler
Revision of the Recent Indo-West Pacific Comatulid Genus Comaster Agassiz. Part 1. The Type Species of Comaster and Phanogenia Loven (Echinodermata: Crinoidea: Comasteridae), Charles G. Messing
Exclusive and Persistent Use of the Entry Coreceptor CXCR4 by Human Immunodeficiency Virus Type 1 from a Subject Homozygous for CCR5 Δ32, Nelson L. Michael, Julie A. E. Nelson, Vineet N. Kewalramani, George Chang, Stephen J. O'Brien, John R. Mascola, Barbara Volsky, Mark Louder, Gilbert C. White II, Dan R. Littman, Ronald Swanstrom, and Thomas R. O'Brien
Comparative Genomics: Tracking Chromosome Evolution in the Family Ursidae Using Reciprocal Chromosome Painting, William G. Nash, J. Wienberg, M. A. Ferguson-Smith, J. C. Menninger, and Stephen J. O'Brien
AIDS: A role for host genes, Stephen J. O'brien
Genetic acceleration of AIDS progression by a promoter variant of CCR5, Stephen J. O'Brien
Patterns of Y and X Chromosome DNA Sequence Divergence During the Felidae Radiation, Jill Pecon-Slattery and Stephen J. O'Brien
Florida's Mystery Coral-Killer Identified, Laurie L. Richardson, Walter Goldberg, Kevin G. Kuta, Richard B. Aronson, Garriet W. Smith, Kim B. Ritchie, John C. Halas, Joshua S. Feingold, and Steven L. Miller
A New Reef Marine Reserve in the Southern Arabian Gulf-Jebel Ali (Dubai, United Arab Emirates), Bernhard Riegl
Association of HLA Profiles with Early Plasma Viral Load, CD4+ Cell Count and Rate of Progression to AIDS Following Acute HIV‐1 Infection, A. J. Saah, Donald R. Hoover, Shingui Weng, Mary Carrington, John Mellors, Charles R. Rinaldo Jr., Dean Mann, R. Apple, John Phair, Roger Detels, Stephen J. O'Brien, Cheryl Enger, Pamela Johnson, Richard A. Kaslow, and Multicenter AIDS Cohort Study
Reef fish assemblages and fisheries in Parque Nacional del Este, Dominican Republic, Emily F. Schmitt Lavin, Mark Chiappone, Kathleen M. Sullivan-Sealey, F. X. Geraldes, E. Pugibet, Robert D. Sluka, R. E. Torres, M. Vega, Y. Rodriguez, J. L. Alarcon, Y. Lictensztain, and G. Bustamante
Comparison of grouper assemblages in northern areas of the wider Caribbean: A preliminary assessment, Emily F. Schmitt Lavin, Robert D. Sluka, and Kathleen M. Sullivan-Sealey
Density, species, and size distribution of groupers (Serranidae) in three habitats at Elbow Reef, Florida Keys, Robert D. Sluka, Mark Chiappone, Kathleen M. Sullivan-Sealey, Thomas A. Potts, Jose M. Levy, Emily F. Schmitt Lavin, and Geoff Meester
A Near-Surface Microstructure Sensor System Used During TOGA COARE. Part I: Bow Measurements., Alexander Soloviev, Roger Lukas, Sharon DeCarlo, Jefrey Snyder, A. Arjannikov, Vyacheslav Turenko, M. Baker, and Dmitry Khlebnikov
Comments on ‘‘Air–Sea Gas Transfer: Mechanisms and Parameterization’’, Alexander Soloviev and Peter Schlüssel
Dating the Origin of the CCR5-Δ32 AIDS-Resistance Allele by the Coalescence of Haplotypes, J. Claiborne Stephens, David E. Riech, David B. Goldstein, Hyoung Doo Shin, Michael W. Smith, Mary Carrington, Cheryl Winkler, Gavin A. Huttley, Rando Allikmets, Lynn Schriml, Bernard Gerrard, Michael Malasky, Maria D. Ramos, Susanne Morlot, Maria Tzetis, Carole Oddoux, Francesco S. di Giovine, Georgios Nasioulas, David Chandler, Michael Aseev, Matthew Hanson, Luba Kalaydjieva, Damjan Glavac, Paolo Gasparini, E. Kanavakis, Mireille Claustres, Marios Kambouris, Harry Ostrer, Gordon Duff, Vladislav Baranov, Hiljar Sibul, Andres Metspalu, David Goldman, Nick Martin, David Duffy, Jorg Schmidtke, Xavier Estivill, Stephen J. O'Brien, and Michael Dean
Stable Oxygen Isotopic Composition of Corals from the Gulf of Guinea as Indicators of Periods of Extreme Precipitation Conditions in the Sub-Sahara, Peter Koenraad Swart, Kathy S. White, David Enfield, Richard E. Dodge, and Peter Milne
An Analogue of Hua's Determinantal Inequality, Bo-Ying Wang and Fuzhen Zhang
On Normal Matrices of Zeros and Ones with Fixed Row Sum, Bo-Ying Wang and Fuzhen Zhang
On the Precise Number of (0,1)-Matrices in u(R, S), Bo-Ying Wang and Fuzhen Zhang
On Zero-One Symmetric and Normal Matrices, Bo-Ying Wang and Fuzhen Zhang
Genetic Restriction of AIDS Pathogenesis by an SDF-1 Chemokine Gene Variant, Cheryl Winkler, William Modi, Michael W. Smith, George W. Nelson, Xueyun Wu, Mary Carrington, Michael Dean, Tasaku Honjo, Kai Tashiro, D. Yabe, Susan Buchbinder, Eric Vittinghoff, James J. Goedert, Thomas R. O'Brien, Lisa Jacobson, Roger Detels, Sharyne Donfield, Anne Willoughby, Edward Gomperts, David Vlahov, John Phair, ALIVE Study, Hemophilia Growth and Development Study, Multicenter AIDS Cohort Study, Multicenter Hemophilia Cohort Study, San Francisco City Cohort, and Stephen J. O'Brien
C-C Chemokines, Pivotal in Protection Against HIV Type 1 Infection, Daniel Zagury, Abderrahim Lachgar, Vida Chams, Lat S. Fall, Jacky Bernard, Jean-Francois Zagury, Bernard Bizzini, Allesandro Gringeri, Elena Santagostino, Jay Rappaport, Michael Feldman, Stephen J. O'Brien, Arsene Burny, and Robert C. Gallo
Submissions from 1997
Naturalness Lowers the Upper Bound on the Lightest Higgs boson Mass in Supersymmetry, Greg W. Anderson, Diego Castano, and Antonio Riotto
Evolutionary Analysis of the 5'-Terminal Region of Hepatitis G Virus Isolated From Different Regions in China, Ping An, Li Wei, Xueyun Wu, Naoya Yuhki, Stephen J. O'Brien, and Cheryl Winkler
A Possible Link Between Coral Diseases and a Corallivorous Snail (Drupella cornus) Outbreak in the Red Sea, Arnfried Antonius and Bernhard Riegl
The Family Line: The Human-Cat Connection, Mauriciou Anton and Stephen J. O'Brien
Complexes of the I,3-Bis(2-Arylimino) Benz (F) Isoindoline Ligand Including the Crystal Structure of the Cu(II)-Acetate Complex, Donald M. Baird, W. P. Maehlmann, Robert D. Bereman, and P. Singh
Intermediates in the Catalytic Dehydrogenative Coupling of Arylgermanes, John E. Bender, Kyle E. Litz, Dimitri Giarikos, Norman J. Wells, Mark M. Banaszak, and Jeff W. Kampf
Novel Alleles of the Chemokine-Receptor Gene CCR5, Mary Carrington, Teri Kissner, Bernard Gerrard, Sergey Ivanov, Stephen J. O'Brien, and Michael Dean
Assignment of the Cat Immunoglobulin Heavy Chain Genes IGHM and IGHG to Chromosome B3q26 and T Cell Receptor Chain Gene TCRG to A2q12-->q13 by Fluorescence In Situ Hybridization, K. W. Cho, H. Satoh, H. Y. Youn, T. Watari, H. Tsujimoto, Stephen J. O'Brien, and A. Hasegawa
Microvariation at the Human D1S80 Locus, George Duncan, K. Balamurugan, B. Budowle, J. Smerick, and M. L. Tracey
The Correlation of Downwelling Irradiance and Staggered Vertical Migration Patterns of Zooplankton in Wilkinson Basin, Gulf of Maine, Tamara M. Frank and Edith A. Widder
The tax Gene Sequences Form Two Divergent Monophyletic Lineages Corresponding to Types I and II of Simian and Human T-Cell Leukemia/Lymphotropic Viruses, Adriana Giri, Jill Pecon-Slattery, Walid Heneine, Antoine Gessain, Emilia Rivadeneira, Ronald C. Desrosiers, Leon Rosen, Ronald Anthony, Joko Pamungkas, Diah Iskandriati, Allen L. Richards, Vincent Herve, Harold McClure, Stephen J. O'Brien, and Genoveffa Franchini
The Relativistic Szego Polynomials, Matthew He, S. Noschese, and P. E. Ricci
Asymptotics of Zeros of Relativistic Hermite Polynomials, Matthew He, K. Pan, and Paolo E. Ricci
Zeros' Asymptotic Distribution of Polynomials Orthogonal with Respect to Varying Weights, Matthew He, P. E. Ricci, and P. Natalini
Numerical Results on the Zeros of Generalized Fibonacci Polynomials, Matthew He, P. E. Ricci, and D. S. Simon
Dynamics of the Zeros of Fibonacci Polynomials, Matthew He, David S. Simon, and Paolo Emilio Ricci
Phylogenetic Reconstruction of the Felidae Using 16S rRNA and NADH-5 Mitochondrial Genes, Warren E. Johnson and Stephen J. O'Brien
Norm Hull of Vectors and Matrices, Chi-Kwong Li, Nam-Kiu Tsing, and Fuzhen Zhang
Sign Patterns of Nonnegative Normal Matrices, Zhongshan Li, Frank Hall, and Fuzhen Zhang
Rates of Nuclear and Cytoplasmic Mitochondrial DNA Sequence Divergence in Mammals, Jose V. Lopez, Melanie Culver, J. Claiborne Stephens, Warren E. Johnson, and Stephen James O'Brien
Discrimination of Species in the Montastrea annularis Complex using Multiple Genetic Loci, Jose V. Lopez and Nancy Knowlton
The Long and Short of Nuclear Mitochondrial DNA (Numt) Lineages, Jose V. Lopez, J. Claiborne Stephens, and Stephen J. O'Brien
Comparative Anchor Tagged Sequences (CATS) for Integrative Mapping of Mammalian Genomes, Leslie A. Lyons, Thomas F. Laughlin, Neal G. Copeland, Nancy A. Jenkins, James E. Womack, and Stephen J. O'Brien
Pet Cat Hair Implicates Murder Suspect, Marilyn Menotti-Raymond, Victor A. David, and Stephen J. O'Brien
Genetic individualization of domestic cats using feline STR loci for forensic applications, Marilyn Menotti-Raymond, Victor A. David, J. Claiborne Stephens, Leslie A. Lyons, and Stephen J. O'Brien
The family line: The human-cat connection, Stephen J. O'Brien
The HIV-AIDS Debate is Over, Stephen J. O'Brien
Comparative Gene Mapping in the Domestic Cat (Felis catus), Stephen J. O'Brien, Stanley Cevario, Janice S. Martenson, M. A. Thompson, William G. Nash, E. Chang, J. A. M. Graves, J. A. Spencer, K.-W. Cho, Hajime Tsujimoto, and Leslie A. Lyons
In Search of AIDS-Resistance Genes, Stephen J. O'Brien and Michael Dean
Comparative Genomics: Lessons From Cats, Stephen J. O'Brien, J. Wienberg, and Leslie A. Lyons
Cloning and Chromosome Mapping of the Feline Genes p21WAF1 and p27Kip1, Masaru Okuda, Ken-ichi Minehata, Asuka Setoguchi University of Tokyo, Kyu-Woan Cho, Noriko Nakamura, Kazuo Nishigaki, Toshihiro Watari, Stanley Cevario, Stephen J. O'Brien, Hajime Tsujimoto, and Atsuhiko Hasegawa
Distribution and Environmental Control of Coral Assemblages in Northern Safaga Bay (Red Sea, Egypt), Bernhard Riegl and W. E. Piller
Cool and Freshwater Skin of the Ocean During Rainfall, Peter Schlüssel, Alexander Soloviev, and William J. Emery
CCR2 Chemokine Receptor and AIDS Progression, Michael W. Smith, Mary Carrington, Cheryl Winkler, Deborah A. Lomb, Michael Dean, Gavin A. Huttley, and Stephen J. O'Brien
CCR5-Δ32 Gene Deletion in HIV-1 Infected Patients, Michael W. Smith, Michael Dean, Mary Carrington, Gavin A. Huttley, and Stephen J. O'Brien
Contrasting Genetic Influence of CCR2 and CCR5 Variants on HIV-1 Infection and Disease Progression, Michael W. Smith, Michael Dean, Mary Carrington, Cheryl Winkler, Gavin A. Huttley, Deborah A. Lomb, James J. Goedert, Thomas R. O'Brien, Lisa Jacobson, Richard A. Kaslow, Susan Buchbinder, Eric Vittinghoff, David Vlahov, Keith Hoots, Margaret Hilgartner, Hemophilia Growth and Development Study, Multicenter AIDS Cohort Study, Multicenter Hemophilia Cohort Study, San Francisco City Cohort, ALIVE Study, and Stephen J. O'Brien
Observation of Large Diurnal Warming Events in the Near-Surface Layer of the Western Equatorial Pacific Warm Pool, Alexander Soloviev and Roger Lukas
Sharp Frontal Interfaces in the Near-Surface Layer of the Ocean in the Western Equatorial Pacific Warm Pool, Alexander Soloviev and Roger Lukas
Conservation Genetics of the Koala (Phascolarctos cinereus) : Low Mitochondrial DNA Variation Amongst Southern Australian Populations, Andrea C. Taylor, Jenny Marshall Graves, Neil D. Murray, Stephen J. O'Brien, Naoya Yuhki, and Bill Sherwin
Infectivity of Lion and Puma Lentiviruses for Domestic Cats, Sue VandeWoude, Stephen J. O'Brien, and Edward A. Hoover
Growth of Lion and Puma Lentiviruses in Domestic Cat Cells and Comparisons with FIV, Sue VandeWoude, Stephen J. O'Brien, Ken Langelier, William D. Hardy, Jill P. Slattery, Evelyn E. Zuckerman, and Edward A. Hoover
Schur Complements and Matrix Inequalities of Hadamard Products, Bo-Ying Wang and Fuzhen Zhang
Conservation of Human vs. Feline Genome Organization Revealed by Reciprocal Chromosome Painting, J. Weinberg, R. Stanyon, W. G. Nash, P. C. O'Brien, F. Yang, Stephen J. O'Brien, and M. A. Ferguson-Smith
Nature and Origin of Polymorphism in Feline MHC Class II DRA and DRB Genes, Naoya Yuhki and Stephen J. O'Brien
Quaternions and Matrices of Quaternions, Fuzhen Zhang
Submissions from 1996
Comparative Genome Organization of Vertebrates, L. Andersson, A. Archibald, M. Ashburner, S. Audun, W. Barendse, J. Bitgood, C. Bottema, T. Broad, S. Brown, D. Burt, C. Charlier, N. Copeland, S. Davis, M. Davisson, J. Edwards, A. Eggen, G. Elgar, J. T. Eppig, I. Franklin, P. Grewe, T. Gill, J. A. M. Graves, R. Hawken, J. Hetzel, A. Hilyard, H. Jacob, L. Jaswinska, N. Jenkins, H. Kunz, G. Levan, O. Lie, Leslie A. Lyons, P. Maccarone, C. Mellersh, G. Montgomery, S. Moore, C. Moran, D. Morizot, M. Neff, F. Nicholas, Stephen J. O'Brien, Y. Parsons, J. Peters, J. Postlethwait, M. Raymond, M. Rothschild, L. Schook, Y. Sugimoto, C. Szpirer, M. Tate, J. Taylor, J. VandeBerg, M. Wakefield, J. Wienberg, and James E. Womack
Constraints on the Minimal Supergravity Model from Non-Standard Vacua, Howard Baer, Michal Brhlik, and Diego Castano
Ligand Effects on the δ → δ* Band Energies and Intensities in a Series of Diimine Complexes of Dimolybdenum, Donald M. Baird, F. L. Yang, D. J. Kavanaugh, G. Finness, and K. R. Dunbar
Benthic Foraminifera from the NECOP Study Area Impacted by the Mississippi River Plume and Seasonal Hypoxia, Patricia Blackwelder, Terri Hood, Carlos A. Alvarez Zarikian, Terry A. Nelsen, and Brent McKee
Genetic and Phylogenetic Divergence of Feline Immunodeficiency Virus in the Puma (Puma concolor), Margaret A. Carpenter, Eric W. Brown, Melanie Culver, Warren E. Johnson, Jill Pecon-Slattery, Dulce Brousset, and Stephen J. O'Brien
Consequences of Supergravity with Gauged U(1)R Symmetry, Diego Castano, D. Z. Freedman, and C. Manuel
A Short-Wavelength Photoreceptor Class in a Deep-Sea Shrimp, Thomas W. Cronin and Tamara M. Frank
Participants in HIV Study: Correction, Michael Dean, Mary Carrington, James J. Goedert, and Stephen J. O'Brien
Genetic Restriction of HIV-1 Infection and Progression to AIDS by a Deletion Allele of the CKR5 Structural Gene, Michael Dean, Mary Carrington, Cheryl Winkler, Gavin A. Huttley, Michael W. Smith, Rando Allikmets, James J. Goedert, Susan Buchbinder, Eric Vittinghoff, Edward Gomperts, Sharyne Donfield, David Vlahov, Richard A. Kaslow, A. J. Saah, Charles Rinaldo, Roger Detels, Hemophilia Growth and Development Study, Multicenter AIDS Cohort Study, Multicenter Hemophilia Cohort Study, San Francisco City Cohort, and Stephen J. O'Brien
Molecular Genetic Identification of a Mexican Onza Speciment as a Puma (Puma concolor), Peter A. Dratch, Wendy Roslund, Janice S. Martenson, Melanie Culver, and Stephen J. O'Brien
Human Phylogenetic Relationships According to the D1S80 Locus, George Duncan, Emmanuel Thomas, Juan C. Gallol, Lynn S. Baird, Jennifer Garrison, and Rene J. Herrera
Coral Survivors of the 1982–83 El Niño-Southern Oscillation, Galápagos Islands, Ecuador, Joshua S. Feingold
UV Light in the Deep‐Sea: In Situ Measurements of Downwelling Irradiance in Relation to the Visual Threshold Sensitivity of UV‐Sensitive Crustaceans, Tamara M. Frank and Edith A. Widder
Explicit Representations of Faber Polynomials for m-Cusped Hypocycloids, Matthew He
Asymptotic Distribution of Zeros of Weighted Fibonacci Polynomials, Matthew He and Paolo E. Ricci
Prevalence of Antibodies to Feline Parvovirus, Calicivirus, Herpesvirus, Coronavirus, and Immunodeficiency Virus and of Feline Leukemia Virus Antigen and the Interrelationship of These Viral Infections in Free-Ranging Lions in East Africa, Regina Hofmann-Lehmann, Daniela Fehr, Markus Grob, Muhamed Elgizoli, Craig Packer, Janice S. Martenson, Stephen J. O'Brien, and Hans Lutz