CNSO Faculty Articles
Submissions from 2002
Fish Assemblages Associated with Artificial Reefs of Concrete Aggregates or Quarry Stone Offshore Miami Beach, Florida, USA, Brian K. Walker, Bruce Henderson, and Richard E. Spieler
Clear-Column Radiative Closure During ACE-Asia: Comparison of Multiwavelength Extinction Derived from Particle Size and Composition with Results from Sun Photometry, J. Wang, Richard C. Flagan, John H. Seinfeld, Haflidi Jonsson, D. R. Collins, P. B. Russell, Beat Schmid, Jens Redemann, J. M. Livingston, Song Gao, Dean A. Hegg, and E. J. Welton
Immunologic Profile of Highly Exposed Yet HIV Type 1-Seronegative Men, Otto Yang, W. John Boscardin, Jose Matud, Mary Ann Hausner, Lance E. Hultin, Patricia M. Hultin, Roger Shih, John Ferbas, Frederick P. Siegal, Michael Shodell, Gene M. Shearer, Edith Grene, Mary Carrington, Stephen J. O'Brien, Charles B. Price, Roger Detels, Beth D. Jamieson, and Janis Giorgi
Submissions from 2001
A Century of Environmental Variability in Oyster Bay Using Ostracode Ecological and Isotopic Data as Paleoenvironmental Tools, Carlos A. Alvarez-Zarikian, Peter Koenraad Swart, Terri Hood, Patricia Blackwelder, Terry A. Nelsen, and Charles Featherstone
Comparative Feline Genomics: A BAC/PAC Contig Map of the Major Histocompatibility Complex Class II Region, Thomas W. Beck, Joan C. Menninger, Ginny Voigt, Kimberly Newmann, Yoko Nishigaki, William G. Nash, Robert M. Stephens, Yu Wang, Pieter J. de Jong, Stephen J. O'Brien, and Naoya Yuhki
In-cloud oxidation of SO2 by O3 and H2O2: Cloud Chamber Measurements and Modeling of Particle Growth, Peter F. Caffrey, William Hoppel, Glendon Frick, Louise Pasternack, James Fitzgerald, Dean A. Hegg, Song Gao, W. R. Leaitch, Nicole Shantz, Thomas Albrechcinski, and John Ambrusko
MHC Class I Molecules and Progression to AIDS, Mary Carrington, Xiaojiang Gao, and Stephen J. O'Brien
Considering Genetic Profiles in Functional Studies of Immune Responsiveness to HIV-1, Mary Carrington, George Nelson, and Stephen J. O'Brien
Comparatively High Densities of the Long-Spined Sea Urchin in the Dry Tortugas, Florida, Mark Chiappone, Steven Miller, Dione W. Swanson, Jerald Ault, and S. G. Smith
Patterns of Size Homoplasy at 10 Microsatellite Loci in Pumas (Puma concolor), Melanie Culver, Marilyn Menotti-Raymond, and Stephen J. O'Brien
Hepatitis C Virus Load is Associated with Human Immunodeficiency Virus Type 1 Disease Progression in Hemophiliacs, Eric S. Daar, Henry Lynn, Sharyne Donfield, Edward Gomperts, Stephen J. O'Brien, Margaret Hilgartner, Keith Hoots, David Chernoff, Steven Arkin, W.-Y. Wong, Cheryl Winkler, and Hemophilia Growth and Development Study
Phylogeography, Population History and Conservation Genetics of Jaguars (Panthera onca, Mammalia, Felidae), Eduardo Eizirik, Jae-Heup Kim, Marilyn Menotti-Raymond, Peter G. Crawshaw Jr., Stephen J. O'Brien, and Warren E. Johnson
Molecular Dating and Biogeography of the Early Placental Mammal Radiation, Eduardo Eizirik, William J. Murphy, and Stephen J. O'Brien
Reactivity of the Europium Hexafluoroacetylacetonate (hfac) Complex, Eu(hfac)3(diglyme), and Related Analogs with Potassium: Formation of the Fluoride hfac "ate" Complexes [LnF(hfac)3K(diglyme)]2, William J. Evans, Dimitri Giarikos, Matthew A. Johnston, Michael A. Greci, and Joseph W. Ziller
Reactivity of the Substituted Butadienes, Isoprene and Myrcene, with Decamethylsamarocene, William J. Evans, Dimitri Giarikos, Christopher B. Robledo, Voon S. Leong, and Joseph W. Ziller
Lanthanide Carboxylate Precursors for Diene Polymerization Catalysis: Syntheses, Structures, and Reactivity with Et2AlCl, William J. Evans, Dimitri Giarikos, and Joseph W. Ziller
The Tetramethylpiperidinyl-1-Oxide Anion (TMPO-) as a Ligand in Lanthanide Chemistry: Synthesis of the Per(TMPO-) Complex [(ONC5H6Me4)2Sm(μ-ONC5H6Me4)]2, William J. Evans, Jeremy M. Perotti, Robert J. Doedens, and Joseph W. Ziller
Responses of Three Coral Communities to the 1997–98 El Niño–Southern Oscillation: Galápagos Islands, Ecuador, Joshua S. Feingold
Experimental and Modeling Studies of Secondary Organic Aerosol Formation and Some Applications to the Marine Boundary Layer, Song Gao, Dean A. Hegg, Glendon Frick, Peter F. Caffrey, Louise Pasternack, Chris Cantrell, William Sullivan, John Ambrusko, Thomas Albrechcinski, and Thomas W. Kirchstetter
Effect of a Single Amino Acid Change in MHC Class I Molecules on the Rate of Progression to AIDS, Xiaojiang Gao, George W. Nelson, Peter Karacki, Maureen P. Martin, John Phair, Richard A. Kaslow, James J. Goedert, Susan Buchbinder, Keith Hoots, David Vlahov, Stephen J. O'Brien, and Mary Carrington
Population Density Methods for Large-Scale Modeling of Neuronal Networks with Realistic Synaptic Kinetics, Evan Haskell, D. Q. Nykamp, and D. Tranchina
Population Density Methods for Large-Scale Modelling of Neuronal Networks with Realistic Synaptic Kinetics: Cutting the Dimension Down to Size, Evan Haskell, D. Q. Nykamp, and D. Tranchina
Platyamoeba pseudovannellida N. Sp., a Naked Amoeba With Wide Salt Tolerance Isolated from the Salton Sea, California, Gwen Hauer, Andrew Rogeson, and O. Roger Anderson
Laboratory Studies of the Efficiency of Selected Organic Aerosols as CCN, Dean A. Hegg, Song Gao, W. Hoppel, Glendon Frick, Peter F. Caffrey, W. R. Leaitch, N. Shantz, John Ambrusko, and Thomas Albrechcinski
Double Helical Sequences and Doubly Stochastic Matrices, Matthew He
Validation of Genetic Case-Control Studies in AIDS and Application to the CX3CR1 Polymorphism, Houria Hendel, Cheryl Winkler, Ping An, Elisabeth Roemer-Binns, George Nelson, Philippe Haumont, Stephen J. O'Brien, Kamel Khalilli, Jean-Francois Zagury, Jay Rappaport, and Jean-Francois Zagury
Temporal Records of δ13C and δ15N in North Pacific Pinnipeds: Inferences Regarding Environmental Change and Diet, Amy Hirons, Donald M. Schell, and Bruce P. Finney
Growth Rates of Vibrissae of Harbor Seals (Phoca vitulina) and Steller Sea Lions (Eumetopias jubatus), Amy Hirons, Donald M. Schell, and David J. St. Aubin
Particle Formation and Growth From Ozonolysis of α-pinene, William Hoppel, James Fitzgerald, Glendon Frick, Peter F. Caffrey, Louise Pasternack, Dean A. Hegg, Song Gao, W. Richard Leaitch, Nicole Shantz, Chris Cantrell, Thomas Albrechcinski, John Ambrusko, and William Sullivan
Sulfur Dioxide Uptake and Oxidation in Sea-Salt Aerosol, William Hoppel, Louise Pasternack, Peter F. Caffrey, Glendon Frick, James Fitzgerald, Dean A. Hegg, Song Gao, John Ambrusko, and Thomas Albrechcinski
Structure and patterns of sequence variation in the mitochondrial DNA control region of the great cats, Kim Jae-Heup, E. Eizirik, S. J. O'Brien, and W. E. Johnson
Review of the Marine Mammals of the Gulf of Mexico, Edward O. Keith
Structure and Patterns of Sequence Variation in the Mitochondrial DNA Control Region of the Great Cats, Jae-Heup Kim, Eduardo Eizirik, Stephen J. O'Brien, and Warren E. Johnson
Patterns of Genetic Diversity in Remaining Giant Panda Populations, Zhi Lu, Warren E. Johnson, Marilyn Menotti-Raymond, Naoya Yuhki, Janice S. Martenson, Susan Mainka, Huang Shi-Qiang, Zheng Zhihe, Guanghan Li, Wenshi Pan, Xiarong Mao, and Stephen J. O'Brien
Serological Changes Associated with Gill-Net Capture and Restraint in Three Species of Sharks, C. Manire, R. Hueter, Eric V. Hull, and Richard E. Spieler
A Revision of the Zenometridae (new rank) (Echinodermata, Crinoidea, Comatulidina), Charles G. Messing and Christopher M. White
An Extensive Deep Reef Terrace on the Tortugas Bank, Florida Keys National Marine Sanctuary, Steven Miller, Mark Chiappone, Dione W. Swanson, Jerald Ault, S. G. Smith, G. Meester, J. Luo, E. Franklin, James A. Bohnsack, Doug Harper, and David B. McClellan
Applying Habitat Equivalency Analysis for Coral Reef Damage Assessment and Restoration, J. Walter Milon and Richard E. Dodge (editor)
Surgical Management of Dyslipidemia: Clinical and Experimental Evidence, Mohammed H. Moghadasian, Jiri J. Frohlich, Mir Saleem, Jong-Myeon Hong, Karim Qayumi, and Charles H. Scudamore
Molecular Phylogenetics and the Origins of Placental Mammals, William J. Murphy, Eduardo Eizirik, Warren E. Johnson, Ya Ping Zhang, Oliver A. Ryder, and Stephen J. O'Brien
Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics, William J. Murphy, Eduardo Eizirik, Stephen J. O'Brien, Ole Madsen, Mark Scally, Christophe J. Douady, Emma Teeling, Oliver A. Ryder, Michael J. Stanhope, Wilfried W. de Jong, and Mark S. Springer
A Radiation Hybrid Mapping Panel for the Rhesus Macacque, William J. Murphy, J. E. Page, C. Smith Jr., Ronald C. Desrosiers, and Stephen J. O'Brien
Evolution of mammalian genome organization inferred from comparative gene mapping, W. J. Murphy, R. Stanyon, and S. J. O'Brien
The Pattern of Phylogenomic Evolution of the Canidae, William G. Nash, Joan C. Menninger, Johannes Wienberg, Hesed M. Padilla-Nash, and Stephen J. O'Brien
Cell Culture Forensics, Stephen J. O'Brien
On Choosing Mammalian Genomes for Sequencing, Stephen J. O'Brien, Eduardo Eizirik, and William J. Murphy
HLA and AIDS: A Cautionary Tale, Stephen J. O'Brien, Xiaojiang Gao, and Mary Carrington
Rapid and Simultaneous Identification of Body Parts from the Morphologically Similar Sharks Carcharhinus obscurus and Carcharhinus plumbeus (Carcharhinidae) Using Multiplex PCR, Melissa Pank, Michael Stanhope, Lisa Natanson, Nancy Kohler, and Mahmood S. Shivji
Canine and Feline Parvoviruses Can Use Human or Feline Transferrin Receptors to Bind, Enter, and Infect Cells, John S. L. Parker, William J. Murphy, Dai Wang, Stephen J. O'Brien, and Colin R. Parrish
Canine and feline parvoviruses can use human or feline transferrin receptors to bind, enter, and infect cells, J. S.L. Parker, W. J. Murphy, D. Wang, S. J. O'Brien, and C. R. Parrish
A Preliminary Checklist of the Shallow-Water Crinoids of the Kerama Islands, Okinawa, Japan., Nicolas J. Pilcher and Charles G. Messing
Degradation of Reef Structure, Coral and Fish Communities in the Red Sea by Ship Groundings and Dynamite Fisheries, Bernhard Riegl
Mapping and Monitoring of Coral Communities and Their Spatial Patterns Using a Surface-Based Video Method from a Vessel, Bernhard Riegl, Jan L. Korrubel, and Charles Martin
Cryptic Tissues Inside Acropora Frameworks (Indonesia): A Mechanism to Enhance Tissue Survival in Hard Times While Also Increasing Framework Density, Bernhard Riegl and Werner Pillar
Soft Coral Mimesis by an Aeolidiid Nudibranch, Bernhard Riegl and Josef Schaffelner
Genetic Evidence for Two Species of Elephant in Africa, Alfred L. Roca, Nicholas Georgiadis, Jill Pecon-Slattery, and Stephen J. O'Brien
Numbers of naked amoebae inhabiting the intertidal zone of two geographically seperate sandy beaches, Andrew Rogerson, Fiona Hannah, Gwen Hauer, and Phillip Cowie
A System for High-Resolution Zooplankton Imaging, Scott Samson, T. L. Hopkins, Andrew Remsen, Lawrence Langebrake, Tracey Sutton, and Jim Patten
rPatterns of mtDNA and Microsatellite Variation in an Island and Mainland Population of Guanacos in Southern Chile, Ronald J. Sarno, William L. Franklin, Stephen J. O'Brien, and Warren E. Johnson
Site-Dependent Differences in Artificial Reef Function: Implications for Coral Reef Restoration, Robin L. Sherman, David S. Gilliam, and Richard E. Spieler
Markers for Mapping by Admixture Linkage Disequilibrium in African American and Hispanic Populations, Michael W. Smith, J. A. Lautenberger, Hyoung Doo Shin, Jean-Paul Chretien, Sadeep Shrestha, Dennis A. Gilbert, and Stephen J. O'Brien
An Approach to Parameterization of the Oceanic Turbulent Boundary Layer in the Western Pacific Warm Pool, Alexander Soloviev, Roger Lukas, and Peter Hacker
Environmental Analysis of Cores from the Helike Delta, Gulf of Corinth, Greece, S. Soter, Patricia Blackwelder, C. Tziavos, D. Katsonopoulou, Terri Hood, and Carlos A. Alvarez Zarikian
Circadian Timing of Meal Feeding and Growth in Fishes, Richard E. Spieler
Artificial Substrate and Coral Reef Restoration: What Do We Need to Know to Know What We Need, Richard E. Spieler, David S. Gilliam, and Robin L. Sherman
Integration of the Feline Radiation Hybrid and Linkage Maps, Shan Sun, William J. Murphy, Marilyn Menotti-Raymond, and Stephen J. O'Brien
Multisensor Sampling of Pelagic Ecosystem Variables in a Coastal Environment to Estimate Zooplankton Grazing Impact, Tracey Sutton, T. L. Hopkins, Andrew Remsen, and Scott Burghhart
Racial Differences in HLA Class II Associations with Hepatitis C Virus Outcomes, Chloe L. Thio, David L. Thomas, James J. Goedert, David Vlahov, Kenrad E. Nelson, Margaret Hilgartner, Stephen J. O'Brien, Peter Karacki, Darlene Marti, Jacquie Astemborski, and Mary Carrington
Phylogenetics, Genome Diversity and Origin of Modern Leopard, Panthera pardus, Olga Uphyrkina, Warren E. Johnson, Howard Quigley, Dale Miquelle, L. Marker, and Stephen J. O'Brien
NCRI 3-D Visualization of Coral Reef Habitat, Brian K. Walker
Gross Brain Morphology in the Yellow Stingray, Urobatis jamaicensis, Brian K. Walker and Robin L. Sherman
The Speed of an Isolume: A Shrimp's Eye View, Edith A. Widder and Tamara M. Frank
Immunologic and Virologic Response to Highly Active Antiretroviral Therapy in the Multicenter AIDS Cohort Study, Traci Yamashita, John Phair, A. Muñoz, Joseph Margolick, Roger Detels, Stephen J. O'Brien, John Mellors, Steven M. Wolinsky, and Lisa Jacobson
Equivalence of the Wielandt Inequality and the Kantorovich Inequality, Fuzhen Zhang
Matrix Inequalities by Means of Block Matrices, Fuzhen Zhang
Jordan Canonical Form of a Partitioned Complex Matrix and Its Applications to Real Quaternion Matrices, Fuzhen Zhang and Yimin Wei
Submissions from 2000
Unusual Polymorphisms in Human Immunodeficiency Virus Type 1 Associated with Nonprogressive Infection, Louis Alexander, Emma Weiskopf, Thomas C. Greenough, Nathan C. Gaddis, Marcy C. Auerbach, MIchael H. Malim, Stephen J. O'Brien, Bruce D. Walker, John L. Sullivan, and Ronald C. Desrosiers
Genetic Heterogeneity and Molecular Epidemiology of GB Virus C/Hepatitis G Virus in China, Ping An, H. Luo, T. Lu, Stephen J. O'Brien, and Cheryl Winkler
Influence of CCR5 Promoter Haplotypes on AIDS Progression in African–Americans, Ping An, Maureen P. Martin, George W. Nelson, Mary Carrington, Michael W. Smith, Kui Gong, David Vlahov, Stephen J. O'Brien, and Cheryl Winkler
Distribution of the HLA-DQA1 and Polymarker Alleles in the Basque Population of Spain, Robert J. Brown, Diane Rowold, Mohammed Tahir, Charles Barna, George Duncan, and Rene J. Herrera
Genomic Ancestry of the American Puma (Puma concolor), Melanie Culver, Warren E. Johnson, Jill Pecon-Slattery, and Stephen J. O'Brien
In vitro strand transfer from broken RNAs results in mismatch but not frameshift mutations, Jeffrey J. DeStefano, Aarti Raja, and Jason V. Christofaro
Oxidation of [(Cyclic Triamine)(1,5-Cyclooctadiene)Iridium]+ Cations by Hydrogen Peroxide Forms Metallaoxetanes, Thomas C. Flood, Masanori Iimura, Jeremy M. Perotti, Arnold L. Rheingold, and Thomas E. Concolino
Temporal Resolution in Mesopelagic Crustaceans, Tamara M. Frank
CI Aquilae, M. O. Jesacher, Stefan Kautsch, S. Kimeswenger, M. S. Muhlbacher, W. Saurer, S. Schmeja, and C. K. Scholz
Significant Admixture Linkage Disequilibrium Across 30 cM Around the FY Locus in African Americans, J. A. Lautenberger, J. Claiborne Stephens, Stephen J. O'Brien, and Michael W. Smith
ACTH4 -10, Substance P, and Dizolcipine (Mk-801) Accelerate Functional Recovery After Hemilabyrinthectomy in Goldfish, Rosana Mattioli, Joseph P. Huston, and Richard E. Spieler
A Radiation Hybrid Map of the Cat Genome: Implications for Comparative Mapping, William J. Murphy, Shan Sun, Zhang-Qun Chen, Naoya Yuhki, Deborah Hirschmann, Marilyn Menotti-Raymond, and Stephen J. O'Brien
Adaptive Cycles: Parasites Selectively Reduce Inbreeding in Soay Sheep, Stephen J. O'Brien
The Effect of Genetic Variation in Chemokines and Their Receptors on HIV Transmission and Progression to AIDS, Stephen J. O'Brien and John P. Moore
Polygenic and Multifactorial Disease Gene Association in Man: Lessons from AIDS, Stephen J. O'Brien, George W. Nelson, Cheryl Winkler, and Michael W. Smith
A Model of Balance of Payments Crisis: Monetary Independences as a Determinant of Exchange Rate Disequilibria, Ordean G. Olson and Matthew He
Patterns of Diversity Among SINE Elements Isolated from Three Y-Chromosome Genes in Carnivores, Jill Pecon-Slattery, William J. Murphy, and Stephen J. O'Brien
Development of Microsatellite Markers in the Guanaco, Lama guanicoe: Utility for South American Camelids, Ronald J. Sarno, Victor A. David, William L. Franklin, Stephen J. O'Brien, and Warren E. Johnson
VHF Radar Detects Oceanic Submesoscale Vortex Along Florida Coast, Lynn K. Shay, Thomas M. Cook, Brian K. Haus, Jorge Martinez, Hartmut Peters, Arthur Mariano, John VanLeer, Edgar An, Samuel Smith, Alexander Soloviev, Robert H. Weisberg, and Mark E. Luther
Genetic Restriction of HIV-1 Pathogenesis to AIDS by Promoter Alleles of IL10, Hyoung Doo Shin, Cheryl Winkler, J. Claiborne Stephens, Jay Bream, Howard Young, James J. Goedert, Thomas R. O'Brien, David Vlahov, Susan Buchbinder, Janis Giorgi, Charles Rinaldo, Sharyne Donfield, Anne Willoughby, Stephen J. O'Brien, and Michael W. Smith
Novel Gene Conversion Between X-Y Homologues Located in the Nonrecombining Region of the Y Chromosome in Felidae (Mammalia), Jill Pecon Slattery, Leslie Sanner-Wachter, and Stephen J. O'Brien
Horizontal Structure of the Upper Ocean Velocity and Density Fields in the Western Equatorial Pacific Warm Pool: Depth Range from 20 to 250 m, Alexander Soloviev, Roger Lukas, and Peter Hacker
On the Hadamard Product of Inverse M-matrices, Bo-Ying Wang, Xiuping Zhang, and Fuzhen Zhang
A Surface-Enhanced Raman and ab Initio Study of Spectra of Lumazine Molecules, Paula A. Faria Waziry, Xingxing Chen, John R. Lombardi, and Ronald L. Birke