CNSO Faculty Articles
Submissions from 2006
Evolution of glutamine synthetase in heterokonts: evidence for endosymbiotic gene transfer and the early evolution of photosynthesis, D. L. Robertson and Aurelien Tartar
T-Lymphocyte Profiles in FIV-Infected Wild Lions and Pumas Reveal CD4 Depletion, Melody E. Roelke, Jill Pecon-Slattery, S. Taylor, S. Citino, E. Brown, Craig Packer, Sue VandeWoude, and Stephen J. O'Brien
Validity, Identification, and Distribution of the Roundscale Spearfish, Tetrapturus georgii (Teleostei: Istiophoridae): Morphological and Molecular Evidence, Mahmood S. Shivji, Jennifer E. Magnussen, Lawrence R. Beerkircher, George Hinteregger, Dennis W. Lee, Joseph E. Serafy, and Eric D. Prince
Behavioral Risk Exposure and Host Genetics of Susceptibility to HIV-1 Infection, Sadeep Shrestha, Steffanie A. Strathdee, Noya Galai, T. K. Oleksyk, M. Daniele Fallin, Shruti Mehta, Daniel Schaid, David Vlahov, Stephen J. O'Brien, and Matthew W. Smith
Diet of Pacific Sleeper Shark, a Potential Steller Sea Lion Predator, in the North-East Pacific Ocean, M. F. Sigler, L. B. Hulbert, C. R. Lunsford, N. H. Thompson, K. Burek, G. O'Corry-Crowe, and Amy Hirons
Studies of Commensal Leucothoid Amphipods: Two New Sponge-Inhabiting Species from South Florida and the Western Caribbean, James Darwin Thomas and Kristine N. Klebba
The Reproductive Seasonality and Gametogenic Cycle of Acropora cervicornis off Broward County, Florida, USA, Bernardo Vargas-Ángel, Susan B. Colley, S. Michael Hoke, and James Darwin Thomas
Movement Patterns of the Round Stingray Urobatis halleri (Cooper) Near a Thermal Outfall, Jeremy Vaudo and Christopher G. Lowe
Pelagic Conditions Affect Larval Behavior, Survival, and Settlement Patterns in the Caribbean Coral Montastraea faveolata, M. J. A. Vermeij, Nicole D. Fogarty, and M. W. Miller
Searching for Signals of Evolutionary Selection in 168 Genes Related to Immune Function, Emily C. Walsh, Pardis Sabeti, Holli Hutcheson, Ben Fry, Stephen F. Schaffner, Paul I. W. de Bakker, Patrick Varilly, Alejandro A. Palma, Jessica Roy, Richard Cooper, Cheryl Winkler, Yi Zeng, Guy de The, Eric S. Lander, Stephen J. O'Brien, and David Altshuler
Relative Perturbation Bounds for the Eigenvalues of Diagonalizable and Singular Matrices - Application of Perturbation Theory for Simple Invariant Subspaces, Yimin Wei, Xiezhang Li, Fanbin Bu, and Fuzhen Zhang
Ballistic stretching increases flexibility and acute vertical jump height when combined with basketball activity, M. T. Woolstenhulme, Christine Multer Griffiths, E. M. Woolstenhulme, and A. C. Parcell
Ion Trajectory Simulations of Axial AC Dipolar Excitation in the Orbitrap, Guangxiang Wu, Robert J. Noll, Wolfgang R. Plass, Qizhi Hu, Richard H. Perry, and R. Graham Cooks
siRNA Drug Delivery by Biodegradable Polymeric Nanoparticles, Xudong Yuan, Ling Li, Appu Rathinavelu, Jinsong Hao, Madhusudhanan Narasimhan, Matthew He, Viviene Heitlage, Linda Tam, Sana Viqar, and Mojgan Salehi
Eigenvalue Inequalities for Matrix Product, Fuzhen Zhang and Qingling Zhang
Submissions from 2005
Global-Scale Genetic Identification of Hammerhead Sharks: Application to Assessment of the International Fin Trade and Law Enforcement, Debra Abercrombie, Shelley C. Clarke, and Mahmood S. Shivji
Holocene Paleohydrology of Little Salt Spring, Florida, Based on Ostracod Assemblages and Stable Isotopes, Carlos A. Alvarez Zarikian, Peter Koenraad Swart, John A. Gifford, and Patricia Blackwelder
The Oryza Bacterial Artificial Chromosome Library Resource: Construction and Analysis of 12 Deep-coverage Large-insert Bac Libraries That Represent the 10 Genome Types of the Genus Oryza, Jetty S.S. Ammiraju, Meizhong Luo, José L. Goicoechea, Wenming Wang, Dave Kudrna, Christopher Mueller, Jayson Talag, HyeRan Kim, Nicholas B. Sisneros, Barbara Blackmon, Eric Fang, Jeffery B. Tomkins, Darshan Brar, David MacKill, Susan McCouch, Nori Kurata, Georgina Lambert, David W. Galbraith, K. Arumuganathan, Kiran Rao, Jason G. Walling, Navdeep Gill, Yeisoo Yu, Phillip SanMiguel, Carol Soderlund, Scott Jackson, and Rod A. Wing
Measurements of Secondary Organic Aerosol from Oxidation of Cycloalkenes, Terpenes, and m-Xylene Using an Aerodyne Aerosol Mass Spectrometer, Roya Bahreini, Melita D. Keywood, Nga L. Ng, Varuntida Varutbangkul, Song Gao, Richard C. Flagan, John H. Seinfeld, D. R. Worsnop, and J. L. Jimenez
The Feline Major Histocompatibility Complex is Rearranged by an Inversion with a Breakpoint in the Distal Class I Region, Thomas W. Beck, Joan C. Menninger, William J. Murphy, William G. Nash, Stephen J. O'Brien, and Naoya Yuhki
Environmental dose of toxaphene does not affect growth, stress response and selected physiological parameters in juvenile Arctic charr (Salvelinus alpinus), Christopher A. Blanar, M. A. Curtis, and H. M. Chan
Growth, nutritional quality and hematology of Arctic charr (Salvelinus alpinus) exposed to toxaphene and tapeworm (Diphyllobothrium dendriticum) larvae, Christopher A. Blanar, M. A. Curtis, and H. M. Chan
An STR Forensic Typing System for Genetic Individualization of Domestic Cat (Felis catus) Samples, J. M. Butler, Leslie Wachter, Marilyn Menotti-Raymond, Stephen J. O'Brien, and V. A. David
Effects of Temperature, Density, and Diet on Development, Survival, Settlement Synchronism, and Fatty Acid Profile of the Ornamental Shrimp Lysmata seticaudata, R. Calado, Joana Figueiredo, R. Rosa, M. L. Nunes, and L. Narciso
Impacts of Lost Fishing Gear on Coral Reef Sessile Invertebrates in the Florida Keys National Marine Sanctuary, Mark Chiappone, Helga Dienes, Dione W. Swanson, and Steven Miller
Stromal Cell–Derived Factor–1 Genotype, Coreceptor Tropism, and HIV Type 1 Disease Progression, Eric S. Daar, Henry S. Lynn, Sharyne Donfield, Alice Lail, Stephen J. O'Brien, Wei Huang, and Cheryl Winkler
Eigenfunctions of Laguerre-type operators and generalized evolution problems, G. Dattoli, M. X. He, and P. E. Ricci
Expressed Sequence Tag (EST) survey of the highly adapted green algal parasite, Helicosporidium, A. P. De Koning, Aurelien Tartar, Drion G. Boucias, and P. J. Keeling
The Linkage Disequilibrium Maps of Three Human Chromosomes Across Four Populations Reflect Their Demographic History and a Common Underlying Recombination Pattern, Francisco M. De La Vega, Hadar Isaac, Andrew Collins, Charles R. Scafe, Bjarni V. Halldorsson, Xiaoping Su, Ross A. Lippert, Yu Wang, Marion Laig-Webster, Ryan T. Koehler, Janet S. Ziegle, Lewis T. Wogan, Junko F. Stevens, Kyle M. Leinen, Sheri J. Olson, Karl J. Guegler, Xiaoqing You, Lily H. Xu, Heinz G. Hemken, Francis Kalush, Mitsuo Itakura, Yi Zheng, Guy de The, Stephen J. O'Brien, Andrew G. Clark, Sorin Istrail, Michael W. Hunkapiller, Eugene G. Spier, and Dennis A. Gilbert
Templated Metal–Organic Frameworks: Synthesis, Structures, Thermal Properties and Solid-State Transformation of Two Novel Calcium–Adipate Frameworks, Daniel T. de Lill, Daniel J. Bozzuto, and Christopher L. Cahill
Poly[(μ3‐n‐hexane‐1,6‐dicarboxylato)dysprosium(III)], Daniel T. de Lill, William W. Brennessel, Lauren A. Borkowski, Noel S. Gunning, and Christopher L. Cahill
Toward Templated Metal−Organic Frameworks: Synthesis, Structures, Thermal Properties, and Luminescence of Three Novel Lanthanide−Adipate Frameworks, Daniel T. de Lill, Noel S. Gunning, and Christopher L. Cahill
The Effect of RANTES Chemokine Genetic Variants on Early HIV-1 Plasma RNA Among African American Injection Drug Users, Priya Duggal, Cheryl Winkler, Ping An, Xiao-Fang Yu, Homayoon Farzadegan, Stephen J. O'Brien, T. H. Beaty, and David Vlahov
Lanthanide Metallocene Reactivity with Dialkyl Aluminum Chlorides: Modeling Reactions Used to Generate Isoprene Polymerization Catalysts, William J. Evans, Timothy M. Champagne, Dimitri Giarikos, and Joseph W. Ziller
Synthesis and Comparative η1-Alkyl and Sterically Induced Reduction Reactivity of (C5Me5)3Ln Complexes of La, Ce, Pr, Nd, and Sm, William J. Evans, Jeremy M. Perotti, Stosh A. Kozimor, Timothy M. Champagne, Benjamin L. Davis, Gregory W. Nyce, Cy H. Fujimoto, Robert D. Clark, Matthew A. Johnston, and Joseph W. Ziller
Formation of a Bridging Planar Trimethylenemethane Dianion from a Neopentyl Precursor via Sequential β-Alkyl Elimination and C−H Activation, William J. Evans, Jeremy M. Perotti, and Joseph W. Ziller
The Synthetic Utility of [(C5Me5)2Ln][(μ-Ph)2BPh2] in Accessing [(C5Me5)2LnR]x Unsolvated Alkyl Lanthanide Metallocenes, Complexes with High C-H Activation Reactivity, William J. Evans, Jeremy M. Perotti, and Joseph W. Ziller
Trialkylboron/Lanthanide Metallocene Hydride Chemistry: Polydentate Bridging of (HBEt3)- to Lanthanum, William J. Evans, Jeremy M. Perotti, and Joseph W. Ziller
Viral Interactions with the Nuclear Transport Machinery: Discovering and Disrupting Pathways, Beatriz M. A. Fontoura, Paula A. Faria Waziry, and Daniel R. Nussenzveig
AIDS Restriction HLA Allotypes Target Distinct Intervals of HIV-1 Pathogenesis, Xiaojiang Gao, Arman A. Bashirova, Astrid K. N. Iversen, John Phair, James J. Goedert, Susan Buchbinder, Keith Hoots, David Vlahov, Marcus Altfeld, Stephen J. O'Brien, and Mary Carrington
The Yersinia pestis type III secretion needle plays a direct role in the regulation of Yop secretion, Julie Torruellas Garcia, Michael W. Jackson, Jeffry W. Pennock, and Gregory V. Plano
HBMMD: An Enhanced Database of the Microorganisms Associated with Deeper Water Marine Invertebrates, Aravinda S. Gunasekera, Karen S. Sfanos, Dedra K. Harmody, Shirley A. Pomponi, Peter J. McCarthy, and Jose V. Lopez
Living on the Edge: High-Latitude Porites Carbonate Production Under Temperate Eutrophic Conditions, J. Halfar, L. Godinez-Orta, Bernhard Riegl, J. E. Valdez-Holguin, and J. M. Borges
Remarkable Salinity Tolerance of Seven Species of Naked Amoebae, Gwen Hauer and Andrew Rogeson
Salt Tolerance of Naked Amoebae, Gwen Hauer and Andrew Rogeson
Inherited Motor Neuron Disease in Domestic Cats: A Model of Spinal Muscular Atrophy, Qianchuan He, Charles Lowrie, G. Diane Shelton, Rudy J. Castellani, Marilyn Menotti-Raymond, William J. Murphy, Stephen J. O'Brien, William Swanson, and John C. Fyfe
Letters to the Editor - Myths About Evolution, J. Matthew Hoch
Reef Fish Assemblage Structure Affected by Small-Scale Spacing and Size Variations of Artificial Patch Reefs, Lance K. B. Jordan, David S. Gilliam, and Richard E. Spieler
Reduced Horizontal Sea Surface Temperature Gradients Under Conditions of Clear Skies and Weak Winds, Kristina B. Katsaros, Alexander Soloviev, Robert H. Weisberg, and Mark E. Luther
G09: An Edge-on Disk Galaxy Catalog, Stefan Kautsch, E. K. Grebel, F. D. Barazza, and J. S. Gallagher
A14: The Influence of Environment on the Morphological Evolution of Disk-Dominated Galaxies, Stefan Kautsch, E. K. Grebel, and J. S. Gallagher
Unexpectedly High Cover of Acropora cervicornis on Offshore Reefs in Roatan (Honduras), Jennifer R. Keck, R. S. Houston, Samuel J. Purkis, and Bernhard Riegl
Disc Separation of the Schur Complement of Diagonally Dominant Matrices and Determinantal Bounds, Jianzhou Liu and Fuzhen Zhang
Aerosol Properties and Chemical Apportionment of Aerosol Optical Depth at Locations off the U.S. East Coast in July and August 2001, Brian I. Magi, Peter V. Hobbs, Thomas W. Kirchstetter, Tihomir Novakov, Dean A. Hegg, Song Gao, Jens Redemann, and Beat Schmid
An STR forensic typing system for genetic individualization of domestic cat (Felis catus) samples, Marilyn A. Menotti-Raymond, Victor A. David, Leslie L. Wachter, John M. Butler, and Stephen J. O'Brien
Haplotype Analysis of the SDF-1 (CXCL12) Gene in a Longitudinal HIV-1/AIDS Cohort Study, William Modi, K. Scott, James J. Goedert, David Vlahov, Susan Buchbinder, Roger Detels, Sharyne Donfield, Stephen J. O'Brien, and Cheryl Winkler
Coral Recruitment Patterns in the Florida Keys, Alison L. Moulding
Assessing the Accuracy of Acoustic Seabed Classification for Mapping Coral Reef Environments in South Florida (Broward County, USA), Ryan P. Moyer, Bernhard Riegl, Kenneth Banks, and Richard E. Dodge
A Rhesus Macaque Radiation Hybrid Map and Comparative Analysis with the Human Genome, William J. Murphy, R. Agarwala, Alejandro A. Schaffer, Robert M. Stephens, Clarence Smith Jr., Nicole J. Crumpler, Victor A. David, and Stephen J. O'Brien
Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps, William J. Murphy, Denis M. Larkin, Annelie Everts-van der Wind, Guillaume Bourque, Glenn Tesler, Loretta Auvil, Jonathan E. Beever, Bhanu P. Chowdhary, Francis Galibert, Lisa Gatzke, Christophe Hitte, Stacey N. Meyers, Denis Milan, Elaine A. Ostrander, Greg Pape, Heidi G. Parker, Terje Raudsepp, Margarita B. Rogatcheva, Lawrence B. Schook, Loren C. Skow, Michael Welge, James E. Womack, Stephen J. O'Brien, Pavel Pevzner, and Harris A. Lewin
Correlation Between Photosensitivity and Downwelling Irradiance in Mesopelagic Crustaceans, Trevor J. Myslinski, Tamara M. Frank, and Edith A. Widder
Pet Project, Stephen J. O'Brien
Genomes and Evolution: The Power of Comparative Genomics, Stephen J. O'Brien and Claire M. Fraser
Big Cat Genomics, Stephen J. O'Brien and Warren E. Johnson
Single Nucleotide Polymorphisms and Haplotypes in the IL10 Region Associated with HCV Clearance, T. K. Oleksyk, Chloe L. Thio, Ann L. Truelove, James J. Goedert, Sharyne Donfield, Gregory D. Kirk, D. L. Thomas, Stephen J. O'Brien, and M. W. Smith
Habitat Use and Demographic Population Structure of Elasmobranchs at a Caribbean Atoll (Glover's Reef, Belize), Ellen K. Pikitch, Demian D. Chapman, Elizabeth A. Babcock, and Mahmood S. Shivji
Fluorescence Census Techniques for Coral Recruits, Gregory A. Piniak, Nicole D. Fogarty, Christine M. Addison, and W. Judson Kenworthy
Reassessing U.S. Coral Reefs, William F. Precht, Steven Miller, Richard B. Aronson, John F. Bruno, and Les S. Kaufman
A "Reef-Up" Approach to Classifying Coral Habitats from IKONOS Imagery, Samuel J. Purkis
Spatial and Temporal Dynamics of Arabian Gulf Coral Assemblages Quantified from Remote-Sensing and in situ Monitoring Data, Samuel J. Purkis and Bernhard Riegl
Remote Sensing of Geomorphology and Facies Patterns on a Modern Carbonate Ramp (Arabian Gulf, Dubai, U.A.E.), Samuel J. Purkis, Bernhard Riegl, and Serge Andrefouet
Effects of Nutrient Enrichment and Elevated CO2 Partial Pressure on Growth Rate of Atlantic Scleractinian Coral Acropora cervicornis, Dorothy-Ellen A. Renegar and Bernhard Riegl
Distribution and Seasonal Biomass of Drift Macroalgae in the Indian River Lagoon (Florida, USA) Estimated with Acoustic Seafloor Classification (QTCView, Echoplus), Bernhard Riegl, Ryan P. Moyer, Lori J. Morris, Robert W. Virnstein, and Samuel J. Purkis
Detection of Shallow Subtidal Corals from IKONOS Satellite and QTC View (50,200 kHz) Single-Beam Sonar Data (Arabian Gulf; Dubai, UAE), Bernhard Riegl and Samuel J. Purkis
Cytonuclear Genomic Dissociation in African Elephant Species, Alfred L. Roca, Nicholas Georgiadis, and Stephen J. O'Brien
Insertional Polymorphisms of Endogenous Feline Leukemia Viruses, Alfred L. Roca, William G. Nash, Joan C. Menninger, William J. Murphy, and Stephen J. O'Brien
Genomic Inferences from Afrotheria and the Evolution of Elephants, Alfred L. Roca and Stephen J. O'Brien
The Case for Selection at CCR5-Δ32, Pardis Sabeti, Emily C. Walsh, Stephen F. Schaffner, Patrick Varilly, Ben Fry, Holli Hutcheson, Mike Cullen, Tarjei S. Mikkelsen, Jessica Roy, Nick Patterson, Richard Cooper, David Reich, David Altshuler, Stephen J. O'Brien, and Eric S. Lander
Tyrosinase and Tyrosinase Related Protein 1 Alleles Specify Domestic Cat Coat Color Phenotypes of the albino and brown Loci, A. Schmidt-Kunzel, Eduardo Eizirik, Stephen J. O'Brien, and Marilyn Menotti-Raymond
A Molecular Systematic Survey of Cultured Microbial Associates of Deep-Water Marine Invertebrates, Karen S. Sfanos, Dedra K. Harmody, Phat Dang, Angela Ledger, Shirley A. Pomponi, Peter McCarthy, and Jose V. Lopez
Structural Attributes Of Artificial Reefs And Associated Fish Assemblages, Robin L. Sherman, P. Arena, P. Quinn, and R. E. Spieler
Genetic Profiling Reveals Illegal International Trade in Fins of the Great White Shark, Carcharodon carcharias, Mahmood S. Shivji, Demian D. Chapman, Ellen K. Pikitch, and Paul W. Raymond
Mapping by Admixture Linkage Disequilibrium: Advances, Limitations and Guidelines, Michael W. Smith and Stephen J. O'Brien
Localization of Polyketide Synthase Encoding Genes to the Toxic Dinoflagellate Karenia brevis, Richard V. Snyder, Maria A. Guerrero, Christopher D. Sinigalliano, Jamie Winshell, Roberto Perez, Jose V. Lopez, and Kathleen S. Rein
The Isotopic Composition of Respired Carbon Dioxide in Scleractinian Corals: Implications for Cycling of Organic Carbon in Corals, Peter Koenraad Swart, Alina Szmant, James W. Porter, Richard E. Dodge, Jennifer I. Tougas, and John R. Southam
Differential expression of chitin synthase (CHS) and glucan synthase (FKS) genes correlates with the formation of a modified, thinner cell wall in in vivo-produced Beauveria bassiana cells, Aurelien Tartar, A. M. Shapiro, D. W. Scharf, and Drion G. Boucias
A Molecular Phylogeny for Bats Illuminates Biogeography and the Fossil Record, Emma C. Teeling, Mark S. Springer, Ole Madsen, Paul Bates, Stephen J. O'Brien, and William J. Murphy
Mannose Binding Lectin Genotypes Influence Recovery from Hepatitis B Virus Infection, Chloe L. Thio, Timothy L. Mosbruger, Jacquie Astemborski, Spencer Greer, Gregory D. Kirk, Stephen J. O'Brien, and David L. Thomas
Seroprevalence and Genomic Divergence of Circulating Strains of Feline Immunodeficiency Virus Among Felidae and Hyaenidae Species, Jennifer L. Troyer, Jill Pecon-Slattery, Melody E. Roelke, Warren E. Johnson, Sue VandeWoude, Nuria Vazquez-Salat, Meredith Brown, Laurence Frank, Rosie Woodroffe, Christiaan Winterbach, Hanlie Winterbach, Graham Hemson, Mitchell Bush, Kathleen A. Alexander, Eloy Revilla, and Stephen J. O'Brien
Environmental Correlates of Cetacean Mass Stranding Sites in Florida, Rebekah J. Walker, Edward O. Keith, Alexander E. Yankovsky, and Daniel K. Odell
Evidence for High Molecular Weight Nitrogen-Containing Organic Salts in Urban Aerosols, Xiaofei Wang, Song Gao, Xin Yang, Hong Chen, Jianmin Chen, Guoshun Zhuang, Jason D. Surratt, Man Nin Chan, and John H. Seinfeld
Farfield Tracing of a Point Source Discharge Plume in the Coastal Ocean Using Sulfur Hexafluoride, Rik Wanninkhof, K. M. Sullivan, W. Paul Dammann, John Proni, Frederick Bloetscher, Alexander Soloviev, and Thomas P. Carsey
VSV Disrupts the Rae1/mrnp41 mRNA Nuclear Export Pathway, Paula A. Faria Waziry, Papia Chakraborty, Agata Levay, Glen N. Barber, Heather J. Ezelle, Jost Enninga, Carlos Arana, Jan van Deursen, and Beatriz M. A. Fontoura
Molecular Evidence for Multiple Lineages in the Gorgonian Family Plexauridae (Anthozoa: Octocorallia), H. H. Wirshing, Charles G. Messing, C. J. Douady, J. K. Reed, M. J. Stanhope, and Mahmood S. Shivji
A Comparison of Diets and Water Agitation Methods for Larval Culture of the Edible Sea Urchin, Tripneustes ventricosus (Echinodermata: Echinoidea), Ray Wolcott and Charles G. Messing
Submissions from 2004
Remote Sensing: A Key Tool for Interdisciplinary Assessment of Coral Reef Processes, Serge Andrefouet and Bernhard Riegl
APOBEC3G Genetic Variants and Their Influence on the Progression to AIDS, Ping An, Gabriela Bleiber, Priya Duggal, George Nelson, Margaret May, Bastien Mangeat, Irene Alobwede, Didier Trono, David Vlahov, Sharyne Donfield, James J. Goedert, John Phair, Susan Buchbinder, Stephen J. O'Brien, Amalio Telenti, and Cheryl Winkler
Characterization of the Marine Fish Assemblage Associated with the Nearshore Hardbottom of Broward County, Florida, USA, Robert M. Baron, Lance K. B. Jordan, and Richard E. Spieler
Prevalence and Differential Host‐Specificity of Two Avian Blood Parasite Genera in the Australo‐Papuan Region, Jon S. Beadell, Eben Gering, Jeremy Austin, John P. Dumbacher, Mike A. Peirce, Thane K. Pratt, Carter T. Atkinson, and Robert C. Fleischer