CNSO Faculty Articles
Submissions from 2009
Artemia franciscana Enrichment Model — How to Keep Them Small, Rich and Alive?, Joana Figueiredo, Robert van Woesik, and Junda Lin
Interpretation of Single-Beam Acoustic Backscatter Using Lidar-Derived Topographic Complexity and Benthic Habitat Classifications in a Coral Reef Environment, Greg Foster, Brian K. Walker, and Bernhard Riegl
Spectral Sensitivity, Visual Pigments and Screening Pigments in Two Life History Stages of the Ontogenetic Migrator Gnathophausia ingens, Tamara M. Frank, Megan Porter, and Thomas W. Cronin
A Lineage-specific Centromere Retrotransposon in Oryza brachyantha, Dongying Gao, Navdeep Gill, Hye-Ran Kim, Jason G. Walling, Wenli Zhang, Chuanzhu Fan, Yeisoo Yu, Jianxin Ma, Phillip SanMiguel, Ning Jiang, Zhukuan Cheng, Rod A. Wing, Jiming Jiang, and Scott A. Jackson
Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10,000 Vertebrate Species, Genome 10K Community of Scientists and Stephen J. O'Brien
Molecular and Chromosomal Evidence for Allopolyploidy in Soybean, Navdeep Gill, Seth Findley, Jason G. Walling, Christian Hans, Jianxin Ma, Jeff Doyle, Gary Stacey, and Scott A. Jackson
Rapid Recovery of a Coral Reef at Darwin Island, Galapagos Islands, Peter W. Glynn, Bernhard Riegl, Adrienne M. S. Correa, and Iliana B. Baums
On the universal zero attractor of the Tribonacci-related polynomials, William Goh, Matthew X. He, and Paolo E. Ricci
Diurnal, Land-Based Predation on Shore Crabs by Moray Eels in the Chagos Archipelago, N. A. J. Graham, Samuel J. Purkis, and A. Harris
Evaluation of Nonviral Risk Factors for Nasopharyngeal Carcinoma in a High-Risk Population of Southern China, Xiuchan Guo, Randall C. Johnson, Hong Deng, Jian Liao, Li Guan, George W. Nelson, Mingzhong Tang, Yuming Zheng, Guy de The, Stephen J. O'Brien, Cheryl Winkler, and Yi Zeng
Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species, David Haussler, Stephen J. O'Brien, Oliver A. Ryder, F. Keith Barker, Michele Clamp, Andrew J. Crawford, Robert Hanner, Olivier Hanotte, Warren E. Johnson, Jimmy A. McGuire, Webb Miller, Robert W. Murphy, William J. Murphy, Frederick H. Sheldon, Barry Sinervo, Byrappa Venkatesh, Edward O. Wiley, Fred W. Allendorf, George Amato, C. Scott Baker, Aaron Bauer, Albano Beja-Pereira, Eldredge Bermingham, Giacomo Bernardi, Cibele R. Bonvicino, Sydney Brenner, Terry Burke, Joel Cracraft, and Mark Diekhans
Mitochondrial DNA Haplogroups Influence Lipoatrophy After Highly Active Antiretroviral Therapy, Sher L. Hendrickson, Lawrence Kingsley, Eduardo Ruiz-Pesini, Jason C. Poole, Lisa Jacobson, Frank J. Pallela, Jay Bream, Douglas C. Wallace, and Stephen J. O'Brien
Adaptive Plasticity of the Penis in a Simultaneous Hermaphrodite, J. Matthew Hoch
An Individual Barnacle, Semibalanus balanoides, with Two Penises, J. Matthew Hoch and Brian Yuen
Surface Mucous as a Source of Genomic DNA from Atlantic Billfishes (Istiophoridae) and Swordfish (Xiphiidae), John P. Hoolihan, Nerida G. Wilson, Ronald M. Faugue, Andrea Bernard, Rebekah L. Horn, Derke Snodgrass, and Duane R. Schultz
A Generalization of the Jaffard-Ohm-Kaplansky Theorem, Wolf Iberkleid and Warren William McGovern
Classes of Commutative Clean Rings, Wolf Iberkleid and Warren William McGovern
Direct Analysis of Stevia Leaves for Diterpene Glycosides by Desorption Electrospray Ionization Mass Spectrometry, Ayanna U. Jackson, Alessandra Tata, Chunping Wu, Richard H. Perry, George Haas, Leslie West, and R. Graham Cooks
Deep-Sea Mystery Solved: Astonishing Larval Transformations and Extreme Sexual Dimorphism Unite Three Fish Families, G. David Johnson, John R. Paxton, Tracey Sutton, Takashi P. Satoh, Tetsuya Sado, Mutsumi Nishida, and Masaki Miya
Camelid Genomics: Anticipating the Future, Warren E. Johnson, Polina L. Perelman, and Stephen J. O'Brien
Edge-On Disk Galaxies in the SDSS DR6: Fractions of Bulgeless and Other Disk Galaxies, Stefan Kautsch
Flat Galaxies in the SDSS DR6, Stefan Kautsch
The Edge-On Perspective of Bulgeless, Simple Disk Galaxies, Stefan Kautsch
The Edge-On Perspective of Bulgeless, Simple Disk Galaxies, Stefan Kautsch
Disk Galaxies and Their Environment, Stefan Kautsch, J. S. Gallagher, and E. K. Grebel
Climate Change, Coral Reef Ecosystems, and Management Options for Marine Protected Areas, Brian D. Keller, Daniel F. Gleason, Elizabeth McLeod, Christa M. Woodley, Satie Airame, Billy D. Causey, Alan M. Friedlander, Rikki Grober-Dunsmore, Johanna E. Johnson, Steven Miller, and Robert S. Steneck
Practicing Fisheries Conservation Biology within Harvesting Regimes, David W. Kerstetter
Movements and Habitat Utilization of Two Longbill Spearfish Tetrapturus pfluegeri in the Eastern Tropical South Atlantic Ocean, David W. Kerstetter, Eric S. Orbesen, S. Robert Snodgrass, and Eric Prince
RSK1 Drives p27Kip1 Phosphorylation at T198 to Promote RhoA Inhibition and Increase Cell Motility, Michelle D. Larrea, Feng Hong, Seth A. Wander, Thiago G. da Silva, David Helfman, Deborah Lannigan, Jeffrey A. Smith, and Joyce M. Slingerland
p27 as Jekyll and Hyde: Regulation of Cell Cycle and Cell Motility, Michelle D. Larrea, Seth A. Wander, and Joyce M. Slingerland
Guidelines for Naming Nonprimate APOBEC3 Genes and Proteins, Rebecca S. LaRue, Valgerdur Andresdottir, Yannick Blanchard, Silvestro G. Conticello, David Derse, Michael Emerman, Warner C. Greene, Stefan R. Jonsson, Nathaniel R. Landau, Martin Lochelt, Harmit S. Malik, Michael H. Malim, Carsten Munk, Stephen J. O'Brien, Vinay K. Pathak, Klaus Strebel, Simon Wain-Hobson, Xiao-Fang Yu, Naoya Yuhki, and Reuben S. Harris
Finitely Generated Limit Varieties of Aperiodic Monoids with Central Idempotents, Edmond W. H. Lee
Hereditarily Finitely Based Monoids of Extensive Transformations, Edmond W. H. Lee
Lyndon's Groupoid Generates a Small Almost Cross Variety, Edmond W. H. Lee
Every Genome Sequence Needs a Good Map, Harris A. Lewin, Denis M. Larkin, J. U. Pontius, and Stephen J. O'Brien
Analyses of Sweet Receptor Gene (Tas1r2) and Preference for Sweet Stimuli in Species of Carnivora, Xia Li, Dieter Glaser, Weihua Li, Warren E. Johnson, Stephen J. O'Brien, Gary K. Beauchamp, and Joseph G. Brand
Characterization of Partial Derivatives with Respect to Boundary Conditions for Solutions of Nonlocal Boundary Value Problems for nth Order Differential Equations, Jeffrey W. Lyons and Johnny Henderson
Boundary Data Smoothness for Solutions of Nonlocal Boundary Value Problems for Second Order Difference Equations, Jeffrey W. Lyons, E. Kim, B. Hopkins, and K. Speer
A Preliminary Comparison of the Vasculature of the Spiral Valve in the Yellow Stingray, Urobatis jamaicensis, and the North American Paddlefish, Polyodon spathula, K. M. Maroni, R. E. Spieler, and Robin L. Sherman
Mapping of the Domestic Cat ‘‘SILVER’’ Coat Color Locus Identifies a Unique Genomic Location for Silver in Mammals, Marilyn Menotti-Raymond, Victor A. David, Eduardo Eizirik, Melody E. Roelke, Helya Ghaffari, and Stephen J. O'Brien
An Autosomal Genetic Linkage Map of the Domestic Cat, Felis silvestris catus, Marilyn Menotti-Raymond, Victor A. David, Alejandro A. Schaffer, James F. Tomlin, Eduardo Eizirik, Cornel Phillip, David Wells, J. U. Pontius, Steven S. Hannah, and Stephen J. O'Brien
The Effects of Trawling on the Physical Condition of the Norway Lobster Nephrops norvegicus in Relation to Seasonal Cycles in the Clyde Sea Area, Rosanna Milligan, A. Albalat, R. J. A. Atkinson, and D. M. Neil
Retinal Degeneration in the Abyssinian and Somali Cat (rdAc): Correlation between Genotype and Phenotype and rdAc Allele Frequency in Two Continents, Kristina Narfstrom, Victor David, Oswald Jarret, Julia A. Beatty, Vanessa R. Barrs, David Wilkie, Stephen J. O'Brien, and Marilyn Menotti-Raymond
Comparative Genomics in Vertebrates: a Role for the Platypus, Stephen J. O'Brien
Stewardship of Human Biospecimens, DNA, Genotype, and Clinical Data in the GWAS Era, Stephen J. O'Brien
Extended IL10 Haplotypes and their Association with HIV Progression to AIDS, T. K. Oleksyk, Sadeep Shrestha, Ann L. Truelove, James J. Goedert, Sharyne Donfield, John Phair, Shruti Mehta, Stephen J. O'Brien, and M. W. Smith
Using a Combined Approach to Explain the Morphological and Ecological Diversity in Phanogenia gracilis Harlaub, 1893 (Echinodermata: Crinoidea) sensu lato: Two Species or Intraspecific Variation?, Christopher L. Owen, Charles G. Messing, Greg W. Rouse, and Mahmood S. Shivji
Recent Region-wide Declines in Caribbean Reef Fish Abundance, Michelle J. Paddack, John D. Reynolds, Consuelo Aguilar, Richard S. Appeldoorn, James Beets, Edward W. Burkett, Paul M. Chittaro, Kristen Clarke, Rene Esteves, Ana C. Fonseca, Graham E. Forrester, Alan M. Friedlander, Jorge Garcia-Sais, Gaspar Gonzalez-Sanson, Lance K. B. Jordan, David B. McClellan, Margaret W. Miller, Philip P. Molloy, Peter J. Mumby, Ivan Nagelkerken, Michael Nemeth, Raul Navas-Camacho, Joanna Pitt, Nicholas V.C. Polunin, Maria Catalina Reyes-Nivia, D. Ross Robertson, Alberto Rodriguez-Ramirez, Eva Salas, Struan R. Smith, Richard E. Spieler, Mark A. Steele, Ivor D. Williams, Clare L. Wormald, Andrew R. Watkinson, and Isabelle M. Cote
Rephasing Ion Packets in the Orbitrap Mass Analyzer to Improve Resolution and Peak Shape, Richard H. Perry, Qizhi Hu, Gary A. Salazar, R. Graham Cooks, and Robert J. Noll
A Low-Cost, High-Throughput, Automated Single Nucleotide Polymorphism Assay for Forensic Human DNA Applications, Robert S. Pomeroy, George Duncan, Bulbin Sunar-Reeder, Elen Ortenberg, Melba Ketchum, Hannah Wasiluk, and Dennis Reeder
Artifacts of the 1.93 Feline Genome Assembly Derived from the Feline- Specific Satellite Sequence, J. U. Pontius and Stephen J. O'Brien
A New Prokaryotic Farnesyldiphosphate Synthase from the Octocoral Eunicea fusca: Differential Display, Inverse PCR, Cloning, and Characterization, Llanie K. Ranzer, Thomas B. Bruck, Wolfram M. Brück, Jose V. Lopez, and Russell G. Kerr
Organic Carbon, Total Nitrogen, and Water-Soluble Ions in Clouds from a Tropical Montane Cloud Forest in Puerto Rico, Gabriel J. Reyes-Rodriguez, Adriana Gioda, Olga L. Mayol-Bracero, and Jeffrey L. Collett Jr.
Species Delineation and Evolutionary History of the Globally Distributed Spotted Eagle Ray (Aetobatus narinari), Vincent P. Richards, Marcy Henning, Wayne Witzell, and Mahmood S. Shivji
Coral Reefs: Threats and Conservation in an Era of Global Change, Bernhard Riegl, Andy Bruckner, Steve L. Coles, Philip Renaud, and Richard E. Dodge
Markov Models for Linking Environments and Facies in Space and Time (Recent Arabian Gulf, Miocene Paratethys), Bernhard Riegl and Samuel J. Purkis
Model of Coral Population Response to Accelerated Bleaching and Mass Mortality in a Changing Climate, Bernhard Riegl and Samuel J. Purkis
Monitored and Modeled Coral Population Dynamics and the Refuge Concept, Bernhard Riegl, Samuel J. Purkis, Jennifer R. Keck, and Gwilym Rowlands
New Perspectives on Ecological Mechanisms Affecting Coral Recruitment on Reefs, Raphael Ritson-Williams, Suzanne N. Arnold, Nicole D. Fogarty, Robert S. Steneck, Mark J. A. Vermeij, and Valerie J. Paul
Pathological Manifestations of Feline Immunodeficiency Virus (FIV) Infection in Wild African Lions, Melody E. Roelke, Meredith Brown, Jennifer L. Troyer, Hanlie Winterbach, Christiaan Winterbach, Graham Hemson, Dahlem Smith, Randall C. Johnson, Jill Pecon-Slattery, Alfred L. Roca, Kathleen A. Alexander, Lin Klein, Paolo Martelli, Karthiyani Krishnasamy, and Stephen J. O'Brien
Molecular Genetic Evidence for Social Group Disruption of Wild Vicuñas Vicugna vicugna Captured for Wool Harvest in Chile, Ronald J. Sarno, Benito A. Gonzalez, Cristian Bonacic, Beatriz Zapata, Stephen J. O'Brien, and Warren E. Johnson
A Domestic Cat X Chromosome Linkage Map and the Sex-Linked orange Locus: Mapping of orange, Multiple Origins and Epistasis Over nonagouti, A. Schmidt-Kunzel, George Nelson, Victor A. David, Alejandro A. Schaffer, Eduardo Eizirik, M. Roelke-Parker, J. S. Kehler, Steven S. Hannah, Stephen J. O'Brien, and Marilyn Menotti-Raymond
Can Circle Hook Use Benefit Billfishes?, Joseph E. Serafy, David W. Kerstetter, and Patrick H. Rice
Association of Y Chromosome Haplogroup I with HIV Progression, and HAART Outcome, Efe Sezgin, Joanne M. Lind, Sadeep Shrestha, Sher L. Hendrickson, James J. Goedert, Sharyne Donfield, Gregory D. Kirk, John Phair, Jennifer L. Troyer, Stephen J. O'Brien, and Michael W. Smith
Theobroma Cacao L. (Malvaceae) Agroecology in Kauai: A Case Study, Genevieve K. Smith, Eben Gering, Rafael F. Guerrero, Emily Jane McTavish, and Tony Lydgate
Morphometric Convergence and Molecular Divergence: the Taxonomic Status and Evolutionary History of Gymnura crebripunctata and Gymnura marmorata in the Eastern Pacific Ocean, W. D. Smith, J. J. Bizzarro, Vincent P. Richards, J. Nielsen, F. Marquez-Flarias, and Mahmood S. Shivji
Pharmaceutical Cleaning Validation Using Non‐Proximate Large‐Area Desorption Electrospray Ionization Mass Spectrometry, Santosh Soparawalla, Gary A. Salazar, Richard H. Perry, Mark Nicholas, and R. Graham Cooks
Chebyshev Optimized Approximate Deconvolution Models of Turbulence, Iuliana Stanculescu and William Layton
Phylogeny‐Based Species Delimitations and the Evolution of Host Associations in Symbiotic Zoanthids (Anthozoa, Zoanthidea) of the Wider Caribbean Region, Timothy D. Swain
Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes, Aurelien Tartar, M. Wheeler, X. Zhou, M. R. Coy, Drion G. Boucias, and M. E. Scharf
A Spectroscopically Confirmed Excess of 24 μm Sources in a Super Galaxy Group at z=0.37: Enhanced Dusty Star Formation Relative to the Cluster and Field Environment, Kim-Vy H. Tran, Amelie Saintonge, John Moustakas, Lei Bai, Anthony H. Gonzalez, Bradford P. Holden, Dennis Zaritsky, and Stefan Kautsch
CCL3L1 and HIV/AIDS Susceptibility, Thomas J. Urban, Amy C. Weintrob, Jacques Fellay, Sara Colombo, Kevin V. Shianna, Curtis Gumbs, Margalida Rotger, Kimberly Pelak, Kristen K. Dang, Roger Detels, Jeremy J. Martinson, Stephen J. O'Brien, Norman L. Letvin, Andrew J. McMichael, Barton F. Haynes, Mary Carrington, Amalio Telenti, Nelson L. Michael, and David B. Goldstein
Spatiotemporal Variability in a Sandflat Elasmobranch Fauna in Shark Bay, Australia, Jeremy Vaudo and Michael Heithaus
Identification of the Larval and Juvenile Stages of the Cubera Snapper, Lutjanus cyanopterus, Using DNA Barcoding, Benjamin C. Victor, Robert H. Hanner, Mahmood S. Shivji, John Hyde, and Chris Caldow
MCP-1 involvement in glial differentiation of neuroprogenitor cells through APP signaling, Emmanuel George Vrotsos, Pappachan E. Kallutakudy, and Kiminobu Sugaya
MCP-1 induced migration of NT2 neuroprogenitor cells involving APP signaling, Emmanuel George Vrotsos and Kiminobu Sugaya
A Novel Vertebrate Eye Using Both Refractive and Reflective Optics, Hans-Joachim Wagner, Ron H. Douglas, Tamara M. Frank, Nicholas W. Roberts, and Julian C. Partridge
Relationship of Reef Fish Assemblages and Topographic Complexity on Southeastern Florida Coral Reef Habitats, Brian K. Walker, Lance K. B. Jordan, and Richard E. Spieler
The Structure and Sensitivity of the Eye of Different Life History Stages of the Ontogenetic Migrator Gnathophausia ingens, Elizabeth A. G. Whitehill, Tamara M. Frank, and Mary K. Olds
Leucothoidae, Kristine N. White and James Darwin Thomas
Thermocatalytic Destruction of Gas-Phase Perchloroethylene Using Propane as a Hydrogen Source, Marty Willinger, Erik Rupp, Brian Barbaris, Song Gao, Robert Arnold, Eric Betterton, and A. Eduardo Saez
Identifying Sharks With DNA Barcodes: Assessing the Utility of a Nucleotide Diagnostic Approach, Eugene H.-K. Wong
Revisiting Hua-Marcus-Bellman-Ando Inequalities on Contractive Matrices, Changqing Xu, Zhaodi Xu, and Fuzhen Zhang
Submissions from 2008
The Evolutionary Dynamics of the Lion Panthera leo Revealed by Host and Viral Population Genomics, Agostinho Antunes, Jennifer L. Troyer, Melody E. Roelke, Jill Pecon-Slattery, Craig Packer, Christiaan Winterbach, Graham Hemson, Laurence G. Frank, Philip Stander, Ludwig Siefert, Margaret Driciru, Paul J. Funston, Kathy A. Alexander, Katherine C. Prager, Gus Mills, David E. Wildt, Mitch E. Bush, Stephen J. O'Brien, and Warren E. Johnson
Climate Change and Coral Reef Bleaching: An Ecological Assessment of Long-Term Impacts, Recovery Trends and Future Outlook, Andrew Baker, Peter W. Glynn, and Bernhard Riegl
Differences in Acoustic Signals from Delphinids in the Western North Atlantic and Northern Gulf of Mexico, Susan C. Baron, Anthony Martinez, Lance P. Garrison, and Edward O. Keith
Urchins in the Meadow: Paleobiological and Evolutionary Implications of Cidaroid Predation on Crinoids, Tomasz K. Baumiller, Rich Mooi, and Charles G. Messing
The Tensor Product of Frames, Abdelkrim Bourouihiya
Genetic Characterization of Feline Leukemia Virus from Florida Panthers, Meredith Brown, Mark W. Cunningham, Alfred L. Roca, Jennifer L. Troyer, Warren E. Johnson, and Stephen J. O'Brien
Parasites of the Deep-Sea Smelt Bathylagus euryops (Argentiniformes: Microstomatidae) from the Charlie-Gibbs Fracture Zone (CGFZ), Markus W. Busch, Sven Klimpel, Tracey Sutton, and Uwe Piatkowski
Use of Real-Time qPCR to Quantify Members of the Unculturable Heterotrophic Bacterial Community in a Deep Sea Marine Sponge, Vetulina sp., M. Cassler, C. L. Peterson, A. Ledger, Shirley A. Pomponi, A. E. Wright, R. Winegar, P. J. McCarthy, and Jose V. Lopez
Parthenogenesis in a Large-Bodied Requiem Shark, the Blacktip Carcharhinus limbatus, Demian D. Chapman, B. Firchau, and Mahmood S. Shivji
Estimation of the Bottleneck Size in Florida Panthers, Melanie Culver, P. W. Hendrick, K. Murphy, Stephen J. O'Brien, and M. G. Hornocker
Epizootiology and Management of Feline Leukemia Virus in the Florida Puma, Mark W. Cunningham, Meredith Brown, David B. Shindle, Scott P. Terrell, Kathleen A. Hayes, Bambi C. Ferree, R. T. McBride, Emmett L. Blankenship, Deborah Jansen, S. Citino, Melody E. Roelke, Richard A. Kiltie, Jennifer L. Troyer, and Stephen J. O'Brien
The Adaptive Evolution of the Mammalian Mitochondrial Genome, Rute R. da Fonseca, Warren E. Johnson, Stephen J. O'Brien, Maria J. Ramos, and Agostinho Antunes
Molecular Taxonomy: An Approach Based on Molecular Markers, Santanu De and Subhendu Bandyopadhyay
A Call to Action for Coral Reefs, Richard E. Dodge, Charles E. Birkeland, Marea Hatziolos, Joan Kleypas, Stephen R. Palumbi, Ove Hoegh-Guldberg, Robert van Woesik, John C. Ogden, Richard B. Aronson, Billy D. Causey, and Francis Staub
Selfishness as Second-Order Altruism, Omar Tonsi Eldakar and David Sloan Wilson
Dual-Mixed Approximation Method for a Three-Field Model of a Nonlinear Generalized Stokes Problem, Vincent J. Ervin, Jason S. Howell, and Iuliana Stanculescu