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Submissions from 2015

Distance Measurement on an Endogenous Membrane Transporter in E. coli Cells and Native Membranes Using EPR Spectroscopy, Benesh Joseph, Arthur Sikora, Enrica Bordignon, Gunnar Jeschke, David S. Cafiso, and Thomas F. Prisner

Nanoparticles for Fidgety Cell Movement and Enhanced Wound Healing, Ivan Jozic, Sylvia Daunert, Marjana Tomic-Canic, and Irena Pastar

Skin under the (Spot)-Light: Cross-Talk with the Central Hypothalamic-Pituitary-Adrenal (HPA) Axis, Ivan Jozic, Olivera Stojadinovic, Robert S. F. Kirsner, and Marjana Tomic-Canic

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Antigen Discovery for the Identification of Vaccine Candidates and Biomarkers Using a T Cell Driven Approach in Combination with Positional Scanning Peptide Libraries, Valeria A. Judkowski, Radleigh Santos, Gonzalo R. Acevedo, Marc Giulianotti, Jon R. Appel, Silvia A. Longhi, Karina A. Gomez, and Clemencia Pinilla

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The Emotional Advantage: The Added Value of the Emotionally Intelligent Negotiator, Neil H. Katz and Adriana Sosa

Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida, Imran Khan, Zhikai Yang, Emanuel Maldonado, Cai Li, Guojie Zhang, M. Thomas P. Gilbert, Erich D. Jarvis, Stephen J. O'Brien, Warren E. Johnson, and Agostinho Antunes

Equatorial F region neutral winds and shears near sunset measured with chemical release techniques, Andrew Kiene, M F. Larsen, and E Kudeki

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Toll-Like Receptor 9-Mediated Inflammation Triggers Alveolar Bone Loss in Experimental Murine Periodontitis, Paul D. Kim, Xia Xia-Juan, Katie E. Crump, Toshiharu Abe, George Hajishengallis, and Sinem E. Sahingur

The Genome 10K Project: A Way Forward, Klaus-Peter Koepfli, Benedict Paten, The Genome 10K Community of Scientists, and Stephen J. O'Brien

The Genome 10K Project: A Way Forward, Klaus-Peter Koepfli, Benedict Paten, The Genome 10K Community of Scientists, and Stephen J. O'Brien

Genome-Wide Evidence Reveals that African and Eurasian Golden Jackals are Distinct Species, Klaus-Peter Koepfli, John Pollinger, Raquel Godinho, Jacqueline Robinson, Amanda Lea, Sarah Hendricks, Rena M. Schweizer, Olaf Thalmann, Pedro Salva, Zhenxin Fan, Andrey A. Yurchenko, Pavel Dobrynin, Alexey Makunin, James A. Cahill, Beth Shapiro, Francisco Alvares, Jose C. Brito, Eli Geffen, Jennifer A. Leonard, Kristofer M. Helgen, Warren E. Johnson, Stephen J. O'Brien, Blaire Van Valkenburgh, and Robert K. Wayne

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Dihydrolipoic Acid Conjugated Carbon Dots Accelerate Human Insulin Fibrillation, Sheba J. Kuruvilla, Shanghao Li, Lorenzo Sansalone, Blake Fortes, Ian Zheng, Patricia Blackwelder, Cyrus Pumilia, Miodrag Micic, Jhony Orbulescu, and Roger M. Leblanc

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Repeated, Long-Distance Migrations by a Philopatric Predator Targeting Highly Contrasting Ecosystems, James S. E. Lea, Bradley M. Wetherbee, Nuno Queiroz, Neil Burnie, Choy Aming, Lara L. Sousa, Gonzalo R. Mucientes, Nicolas E. Humphries, Guy Harvey, David W. Sims, and Mahmood S. Shivji

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A Class of Finite Semigroups Without Irredundant Bases of Identities, Edmond W. H. Lee

Inherently Non-Finitely Generated Varieties of Aperiodic Monoids with Central Idempotents, Edmond W. H. Lee

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The Variety Generated by All Monoids of Order Four Is Finitely Based, Edmond W. H. Lee and Jian Rong Li

Finite Basis Problem for Semigroups of Order Six, Edmond W. H. Lee and Wen Ting Zhang

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Positivity of partitioned Hermitian matrices with unitarily invariant norms, Chi Kwong Li and Fuzhen Zhang

Nontoxic Carbon Dots Potently Inhibit Human Insulin Fibrillation, Shanghao Li, Lingyu Wang, Charles C. Chusuei, Valentina M. Suarez, Patricia Blackwelder, Miodrag Micic, Jhony Orbulescu, and Roger M. Leblanc

Paper-Based Electrochemical Cell Coupled to Mass Spectrometry, Yao-Min Liu and Richard H. Perry

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Undergraduate Writing Fellows and Archival Research: Answering the “So What?” Questions, Claire Lutkewitte and Kamila Albert

Undergraduate Writing Fellows and Archival Research: Answering the “So What?” Questions, Claire Lutkewitte and Kamila Albert

Assessing iPad Use by Arts and Science Faculty, Claire Lutkewitte and Pradeep Vanguri

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Assessing iPad Use by Arts and Science Faculty, Claire Lutkewitte and Pradeep Vanguri

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The Derivative of a Solution to a Second Order Parameter Dependent Boundary Value Problem with a Nonlocal Integral Boundary Condition, Jeffrey W. Lyons and Joseph K. Miller

A Difference Equation with Anti-Periodic Boundary Conditions, Jeffrey W. Lyons and Jeffrey T. Neugebauer

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Existence of an Antisymmetric Solution of a Boundary Value Problem with Antiperiodic Boundary Conditions, Jeffrey W. Lyons and Jeffrey T. Neugebauer

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African Elephants (Loxodonta Africana) Can Detect TNT Using Olfaction: Implications for Biosensor Application, Ashadee K. Miller, Michael C. Hensman, Sean Hensman, Kip Schulz, Paul Reid, Mike Shore, Jessica S. Brown, Kenneth G. Furton, and Stephen Lee

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Ecology: Keyword Essay, Janine Morris

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[Review] D.26: (Re)Opening the Ditto Device: DIY Publishing as Crafting Agency, Janine Morris

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Review: Multimodal Literacies and Graphic Memoirs: Using Alison Bechdel in the Classroom, Janine Morris

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Does the Stellar Disc Flattening Depend on the Galaxy Type, A. V. Mosenkov, N. Ya. Sotnikova, V. P. Reshetnikov, D. V. Bizyaev, and Stefan Kautsch

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Evolved Morality: The Biology and Philosophy of Human Conscience, Ben Mulvey

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The Domestication of Language: Cultural Evolution and the Uniqueness of the Human Animal, Ben Mulvey

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Biogeochemical Analysis of Ancient Pacific Cod Bone Suggests Hg Bioaccumulation was Linked to Paleo Sea Level Rise and Climate Change, Maribeth S. Murray, C. Peter McRoy, L. K. Duffy, Amy Hirons, J. M. Schaaf, Robert P. Trocine, and John Trefry

Imprisoned Lightning: Charge Transport in Trehalose-Derived Sugar Glasses, Louis R. Nemzer, Mahantesh S. Navati, and Joel M. Friedman

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Subsistence strategies in traditional societies distinguish gut microbiomes, Alexandra J. Obregon-Tito, Raul Y. Tito, Jessica Metcalf, Krithivasan Sankaranarayanan, Jose C. Clemente, Luke K. Ursell, Zhenjiang Zech Xu, Will Van Treuren, Rob Knight, Patrick M. Gaffney, Paul Spicer, Paul Lawson, Luis Marin-Reyes, Omar Trujillo-Villarroel, Morris Foster, Emilio Guija-Poma, Luzmila Troncoso-Corzo, Christina Warinner, Andrew T. Ozga, and Cecil M. Lewis Jr.

Genetic Diversity of White Sharks, Carcharodon carcharias, in the Northwest Atlantic and Southern Africa, Shannon J. O'Leary, Kevin A. Feldheim, Andrew T. Fields, Lisa Natanson, Sabine Wintner, Nigel Hussey, Mahmood S. Shivji, and Demian D. Chapman

Putting Russia on the Genome Map, T. K. Oleksyk, Vladimir Brukhin, and Stephen J. O'Brien

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The Genome Russia Project: Closing the Largest Remaining Omission on the World Genome Map, T. K. Oleksyk, Vladimir Brukhin, and Stephen J. O'Brien

Clostridium amazonense sp. nov. an obliqately anaerobic bacterium isolated from a remote Amazonian community in Peru, Lindsey O'Neal, Alexandra J. Obregon-Tito, Raul Y. Tito, Andrew T. Ozga, Susan I. Polo, Cecil M. Lewis Jr., and Paul Lawson

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Nitrous Oxide and Methane Dynamics in a Coral Reef Lagoon Driven by Pore Water Exchange: Insights from Automated High‐Frequency Observations, Chiara O'Reilly, Isaac R. Santos, Tyler Cyronak, Ashly McMahon, and Damien T. Maher

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Origins of an Unmarked Georgia Cemetery Using Ancient DNA Analysis, Andrew T. Ozga, Raul Y. Tito, Brian M. Kemp, Hugh Matternes, Alexandra J. Obregon-Tito, Leslie Neal, and Cecil M. Lewis Jr.

Multistage Reactive Transmission-Mode Desorption Electrospray Ionization Mass Spectrometry, Kevin C. Peters, Troy J. Comi, and Richard H. Perry

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A New Species of the Ceratioid Anglerfish Genus Lasiognathus Regan (Lophiiformes: Oneirodidae) from the Northern Gulf of Mexico, Theodore W. Pietsch and Tracey Sutton

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The role of endocytic Rab GTPases in regulation of growth factor signaling and the migration and invasion of tumor cells, Nicole Porther and M. Alejandro Barbieri

Morphometric Patterns in Modern Carbonate Platforms Can Be Applied to the Ancient Rock Record: Similarities Between Modern Alacranes Reef and Upper Palaeozoic Platforms of the Barents Sea, Samuel J. Purkis, Giulio Casini, Dave Hunt, and Arnout Colpaert

Photochemistry of Free and Bound Zn-Chlorophyll Analogues to Synthetic Peptides Depend on the Quinone and pH, Reza Razeghifard

Genetic Evidence Supports Larval Retention in the Western Caribbean for an Invertebrate With High Dispersal Capability (Ophiothrix suensonii: Echinodermata, Ophiuroidea), Vincent P. Richards, Melissa B. DeBiasse, and Mahmood S. Shivji

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Water Column Productivity and Temperature Predict Coral Reef Regeneration Across the Indo-Pacific, Bernhard Riegl, Peter W. Glynn, Evie A. Wieters, Samuel J. Purkis, C. D'Angelo, and Joerg Wiedenmann

Coral Population Dynamics Across Consecutive Mass Mortality Events, Bernhard Riegl and Samuel J. Purkis

Gut Microbiome Diversity among Cheyenne and Arapaho Individuals from Western Oklahoma, Krithivasan Sankaranarayanan, Andrew T. Ozga, Christina Warinner, Raul Y. Tito, Alexandra J. Obregon-Tito, Jiawu Xu, Patrick M. Gaffney, Lori L. Jervis, Derrell Cox, Lancer Stephens, Morris Foster, Gloria Tallbull, Paul Spicer, and Cecil M. Lewis Jr.

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"These Two Pretty Children / Flew Away": Myth and Migration in the Night of the Hunter, Marlisa Santos

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Semi-Automated Object-Based Classification of Coral Reef Habitat Using Discrete Choice Models, Steven Saul and Samuel J. Purkis

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Review of Comics and Language: Reimagining Critical Discourse on the Form by Hannah Miodrag, Molly J. Scanlon

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Understanding Rhetoric: A Guide to Writing by Elizabeth Losh, Jonathan Alexander, Kevin Cannon, and Zander Cannon [Book Review], Molly J. Scanlon

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The Work of Comics Collaborations: Considerations of Multimodal Composition for Writing Scholarship and Pedagogy, Molly J. Scanlon

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The Grilled Cheese Principle. Personal Belief Essay as part of a public dialog about belief, Emily F. Schmitt Lavin

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Recurrent Evolution of Melanism in South American Felids, Alexsandra Schneider, Corneliu Henegar, Kenneth Day, Devin Absher, Constanza Napolitano, Leandro Silveira, Victor A. David, Stephen J. O'Brien, Marilyn Menotti-Raymond, Gregory S. Barsh, and Eduardo Eizirik

Targeting Millennials: Social Media Strategies within Higher Education, Whitney L. Sessa

Evaluation of DNA methylation markers and their potential to predict human aging, Deborah S. B. S. Silva, Joana Antunes, Kuppareddi Balamurugan, George Duncan, Clarice S. Alho, and Bruce McCord

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3D Dynamics of Freshwater Lenses in the Near-Surface Layer of the Tropical Ocean, Alexander Soloviev, Cayla Whitney Dean, and Atsushi Fujimura

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Cookiecutter: A Tool for Kmer-Based Read Filtering and Extraction, Ekaterina Starostina, Gaik Tamazian, Pavel Dobrynin, Stephen J. O'Brien, and Aleksey Komissarov

The Effect of Parasitic Infection by Hematodinium SP. on Escape Swimming and Subsequent Recovery in the Norway Lobster, Nephrops norvegicus (L.), G. D. Stentiford, D. M. Neil, A. Albalat, Rosanna Milligan, and N. Bailey

Evolution of Anthozoan Polyp Retraction Mechanisms: Convergent Functional Morphology and Evolutionary Allometry of the Marginal Musculature in Order Zoanthidea (Cnidaria: Anthozoa: Hexacorallia), Timothy D. Swain, Jennifer L. Schellinger, Anna M. Strimaitis, and Kim E. Reuter

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Growth, Injury, and Population Dynamics in the Extant Cyrtocrinid Holopus mikihe (Crinoidea, Echinodermata) near Roatan, Honduras, V. J. Syverson, Charles G. Messing, Karl Stanley, and Tomasz K. Baumiller

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Investigating the Role of the Host Multidrug Resistance Associated Protein Transporter Family in Burkholderia cepacia Complex Pathogenicity Using a Caenorhabditis elegans Infection Model, Pietro Tedesco, Marco Visone, Ermenegilda Parrilli, Maria Luisa Tutino, Elena Perrin, Isabel Maida, Renato Fani, Francesco Ballestriero, Radleigh Santos, Clemencia Pinilla, Elia Di Schiavi, George Tegos, and Donatella de Pascale

Connectivity Between Submerged and Near-Sea-Surface Coral Reefs: Can Submerged Reef Populations Act as Refuges?, Christopher J. Thomas, Tom C. L. Bridge, Joana Figueiredo, Eric Deleersnijder, and Emmanuel Hanert

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Leucothoe eltoni sp. n., a New Species of Commensal Leucothoid Amphipod from Coral Reefs in Raja Ampat, Indonesia (Crustacea, Amphipoda), James Darwin Thomas

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[Book Review] Toscano on Wilson, 'The Street Politics of Abortion: Speech, Violence, and America's Culture Wars', Vicki L. Toscano

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Forced Sonograms and Compelled Speech Abortion Regulations: A Constitutional Analysis, Vicki L. Toscano

Origin of the Hadži ABC Structure: An Ab Initio Study, Brian L. Van Hoozen Jr. and Poul B. Petersen

The Effect of the North Atlantic Subpolar Front as a Boundary in Pelagic Biogeography Decreases with Increasing Depth and Organism Size, Michael Vecchione, Tone Falkenhaug, Tracey Sutton, April Cook, Astthor Gislason, Hege Overbo Hansen, Mikko Heino, Peter I. Miller, Uwe Piatkowski, Filipe M. Porteiro, Henrik Soiland, and Odd Aksel Bergstad

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Sarah Polley's Documemoir "Stories We Tell": The Refracted Subject, Kathleen J. Waites

Diagnosing Domoic Acid Toxicosis in the California Sea Lion (Zalophus californianus) Using Behavioral Criteria: A Novel Approach, Christiana Wittmaack, Garet P. Lahvis, Edward O. Keith, and Caryn Self-Sullivan

Phylogenetic and Transcriptomic Analyses Reveal the Evolution of Bioluminescence and Light Detection in Marine Deep-Sea Shrimps of the Family Oplophoridae (Crustacea: Decapoda), Juliet M. Wong, Jorge L. Perez-Moreno, Tin-Yam Chan, Tamara M. Frank, and Heather D. Bracken-Grissom

Genetic Ancestry of the Extinct Javan and Bali Tigers, Hao-Ran Xue, Nobuyuki Yamaguchi, Carlos A. Driscoll, Yu Han, Gila Kahila Bar-Gal, Yan Zhuang, Ji H. Mazak, David W. Macdonald, Stephen J. O'Brien, and Shu-Jin Luo

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Teaching the Civil Rights Act of 1964, Charles L. Zelden

Infrared Nonlinear Optical Properties of Lithium-Containing Diamond-like Semiconductors Li2ZnGeSe4 and Li2ZnSnSe4, Jian-Han Zhang, Daniel J. Clark, Jacilynn A. Brant, Charles W. Sinagra III, Yong Soo Kim, Joon I. Jang, and Jennifer A. Aitken

A Massive Expansion of Effector Genes Underlies Gall-Formation in the Wheat Pest Mayetiola destructor, Chaoyang Zhao, Lucio Navarro Escalante, Hang Chen, Thiago Benatti, Jiaxin Qu, Sanjay Chellapilla, Robert Waterhouse, David Wheeler, Martin Andersson, Riyue Bao, Matthew Batterton, Susanta Behura, Kerstin Blankenburg, Doina Caragea, James Carolan, Marcus Coyle, Mustapha El-Bouhssini, Liezl Francisco, Markus Friedrich, Navdeep Gill, Tony Grace, Cornelis Grimmelikhuijzen, Yi Han, Frank Hauser, Nicolae Herndon, Michael Holder, Panagiotis Ioannidis, LaRonda Jackson, Mehwish Javaid, Shalini Jhangiani, Alisha Johnson, Divya Kalra, Viktoriya Korchina, Christie Kovar, Fremiet Lara, Sandra Lee, Xuming Liu, Christer Löfstedt, Robert Mata, Tittu Mathew, Donna Muzny, Swapnil Nagar, Lynne Nazareth, Geoffrey Okwuonu, Fiona Ongeri, Lora Perales, Brittany Peterson, Ling-Ling Pu, Hugh Robertson, Brandon Schemerhorn, Steven Scherer, Jacob Shreve, DeNard Simmons, Subhashree Subramanyam, Rebecca Thornton, Kun Xue, George Weissenberger, Christie Williams, Kim Worley, Dianhui Zhu, Yiming Zhu, Marion O. Harris, Richard Shukle, John Werren, Evgeny Zdobnov, Ming-Shun Chen, Susan Brown, Jeffery Stuart, and Stephen Richards

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Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification, Kirsten Ziesemer, Allison Mann, Krithivasan Sankaranarayanan, Hannes Schroeder, Andrew T. Ozga, Bernd W. Brandt, Egija Zaura, Andrea Waters-Rist, Menno Hoogland, Domingo C. Salazar-Garcia, Mark Aldenderfer, Camilla Speller, Jessica Hendy, Darlene A. Weston, Sandy J. MacDonald, Gavin H. Thomas, Matthew J. Collins, Cecil M. Lewis Jr., Corinne Hofman, and Christina Warinner

Submissions from 2014

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Age and Growth of Three Coastal-Pelagic Tunas (Actinopterygii: Perciformes: Scombridae) in the Florida Straits, USA: Blackfin Tuna, Thunnus atlanticus, Little Tunny, Euthynnus alletteratus, and Skipjack Tuna, Katsuwonus pelamis, Jessica L. Adams and David W. Kerstetter

NMR-Based Molecular Ruler for Determining the Depth of Intercalants Within the Lipid Bilayer: Part III: Studies on Keto Esters and Acids, Michal Afri, Carmit Alexenberg, Pinchas Aped, Efrat Bodner, Sarit Cohen, Michal Ejgenburg, Shlomi Eliyahu, Pessia Gilinsky-Sharon, Yifat Harel, Miriam E. Naqqash, Hani Porat, Ayala Ranz, and Aryeh A. Frimer

NMR-Based Molecular Ruler for Determining the Depth of Intercalants Within the Lipid Bilayer. Part IV: Studies on Ketophospholipids, Michal Afri, Carmit Alexenberg, Pinchas Aped, Efrat Bodner, Sarit Cohen, Michal Ejgenburg, Shlomi Eliyahu, Pessia Gilinsky-Sharon, Yifat Harel, Miriam E. Naqqash, Hani Porat, Ayala Ranz, and Aryeh A. Frimer

NMR-Based Molecular Ruler for Determining the Depth of Intercalants Within the Lipid Bilayer. Part V: A Comparison of Liposomes, Bioliposomes and Erythrocyte Ghosts, Michal Afri, Carmit Alexenberg, Efrat Bodner, Aryeh A. Frimer, Abraham I. Jacob, and Miriam E. Naqqash

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TP_k Completion of Patterns with One Unspecified Entry, V. Akin, C. R. Johnson, and Shahla Nasserasr

The People vs. The Florida Manatee: A Review of the Laws Protecting Florida's Endangered Marine Mammal and Need for Application, Aarin Conrad Allen, Danielle C. Sattelberger, and Edward O. Keith

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Comment on “Chemically Mediated Behavior of Recruiting Corals and Fishes: A Tipping Point That May Limit Reef Recovery”, Andrew H. Baird, Vivian R. Cumbo, Joana Figueiredo, Saki Harii, Tom Hata, and Joshua S. Madin

Carcinoembryonic Antigen Promotes Colorectal Cancer Progression by Targeting Adherens Junction Complexes, Olga Bajenova, Nina Chaika, Elena Tolkunova, Alexander Davydov-Sinitsyn, Svetlana Gapon, Peter Thomas, and Stephen J. O'Brien

Genetic Factors Involved in Human Colorectal Cancer Metastasis, Olga Bajenova and Stephen J. O'Brien

Identification of spermatozoa by tissue-specific differential DNA methylation using bisulfite modification and pyrosequencing, Kuppareddi Balamurugan, Robin Bombardi, George Duncan, and Bruce McCord

Patterns of coral settlement in an extreme environment: the southern Persian Gulf (Dubai, United Arab Emirates), Andrew G. Bauman, Andrew H. Baird, John A. Burt, Morgan S. Pratchett, and David A. Feary (editor)

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Marginal Coral Populations: the Densest Known Aggregation of Pocillopora in the Galápagos Archipelago is of Asexual Origin, Iliana B. Baums, Meghann Devlin-Durante, Beatrice A. A. Laing, Joshua S. Feingold, Tyler B. Smith, Andrew Bruckner, and Joao Monteiro

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How ISIS Came to Be and Why It Must Be Stopped, Dustin Berna

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ISIS Must Be Stopped, Dustin Berna

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ISIS - Who They Are; What They Want; How to Stop Them, Dustin Berna

The Lack of American National Security, Dustin Berna

Understanding What Makes ISIS Tick, Dustin Berna

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Understanding What Makes ISIS Tick, Dustin Berna

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Understanding What Makes ISIS Tick, Dustin Berna