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Submissions from 2008

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Sequences, Annotation and Single Nucleotide Polymorphism of the Major Histocompatibility Complex in the Domestic Cat, Naoya Yuhki, James C. Mullikin, Thomas W. Beck, Robert M. Stephens, and Stephen J. O'Brien

A Population-Based Study to Investigate Host Genetic Factors Associated with Hepatitis B Infection and Pathogenesis in the Chinese Population, Zheng Zheng, Li Guan, Ping An, Shan Sun, Stephen J. O'Brien, Cheryl Winkler, and HBV Study Consortium

Submissions from 2007

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Polymorphisms of CUL5 are Associated with CD4+ T Cell Loss in HIV-1 Infected Individuals, Ping An, Priya Duggal, Li Hua Wang, Stephen J. O'Brien, Sharyne Donfield, James J. Goedert, John Phair, Susan Buchbinder, Gregory D. Kirk, and Cheryl Winkler

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Regulatory Polymorphisms in the Cyclophilin A Gene, PPIA, Accelerate Progression to AIDS, Ping An, Li Hua Wang, Holli Hutcheson-Dilks, George Nelson, Sharyne Donfield, James J. Goedert, Charles Rinaldo, Susan Buchbinder, Gregory D. Kirk, Stephen J. O'Brien, and Cheryl Winkler

Mitochondrial Introgressions into the Nuclear Genome of the Domestic Cat, Agostinho Antunes, J. U. Pontius, Maria J. Ramos, Stephen J. O'Brien, and Warren E. Johnson

Fish assemblages on sunken-vessels and natural reefs in southeast Florida, USA, Paul Thomas Arena, L. K. B. Jordan, and R. E. Speiler

A Photoionization Model for the Soft X-Ray Spectrum of NGC 4151, Bryan Armentrout, S. B. Kraemer, and T. J. Turner

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Primate TNF Promoters Reveal Markers of Phylogeny and Evolution of Innate Immunity, Andres Baena, Alan R. Mootnick, James V. Falvo, Alla V. Tsytsykova, Filipa Ligeiro, Ousmane M. Diop, Claudia Brieva, Pascal Gagneux, Stephen J. O'Brien, Oliver A. Ryder, and Anne E. Goldfeld

Geomorphology of the Southeast Florida Continental Reef Tract (Miami-Dade, Broward, and Palm Beach Counties, USA), Kenneth Banks, Bernhard Riegl, E. A. Shinn, Werner Pillar, and Richard E. Dodge

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Stalked Crinoid Locomotion, and its Ecological and Evolutionary Implications, Tomasz K. Baumiller and Charles G. Messing

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Compatifiant Algebras and the C*-algebras of the affine group, Abdelkrim Bourouihiya, M. Akouchi, and A. Bakali

Seasonal Occurrence of Atlantic Cutlassfish, Trichiurus lepturus, in Southeastern Florida with Notes on Reproduction and Stomach Contents, David R. Bryan and Shaun M. Gill

Liquid Chromatography with Dual Parallel Mass Spectrometry and 31P Nuclear Magnetic Resonance Spectroscopy for Analysis of Sphingomyelin and Dihydrosphingomyelin: II. Bovine Milk Sphingolipids, Wm. Craig Byrdwell and Richard H. Perry

Homo- and Heterometallic Coordination Polymers from the f Elements, Christopher L. Cahill, Daniel T. de Lill, and Mark Frisch

Characterization of the Rossler System in Parameter Space, Victor Castro, Marco Monti, William B. Pardo, Jonathan A. Walkenstein, and Epaminondas Rosa Jr.

The Structure of Different Flows in Parameter Space, Victor Castro, Marco Monti, William B. Pardo, Jonathan A. Walkenstein, and Epaminondas Rosa Jr.

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Deep-Diving and Diel Changes in Vertical Habitat Use by Caribbean Reef Sharks Carcharhinus perezi, Demian D. Chapman, Ellen K. Pikitch, Elizabeth A. Babcock, and Mahmood S. Shivji

Virgin Birth in a Hammerhead Shark, Demian D. Chapman, Mahmood S. Shivji, Ed Louis, Julie Sommer, Hugh Fletcher, and Paulo A. Prodohl

Vision in the Hyperiid Amphipod Scina crassicornis, Jonathan H. Cohen and Tamara M. Frank

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Validation of a Short Tandem Repeat Multiplex Typing System for Genetic Individualization of Domestic Cat Samples, Nikia Coomber, Victor A. David, Stephen J. O'Brien, and Marilyn Menotti-Raymond

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Regulation of Cell Diameter, For3p Localization, and Cell Symmetry by Fission Yeast Rho-GAP Rga4p, Maitreyi Das, David J. Wiley, Saskia Medina, Helen A. Vincent, Michelle D. Larrea, Andrea Oriolo, and Fulvia Verde

Synthesis and Characterization of a Praseodymium–Adipate Framework Templated with 1,2-bis(4-Pyridyl)ethane: Host–Guest Interactions and Structural Survey, Daniel T. de Lill and Christopher L. Cahill

The Near Eastern Origin of Cat Domestication, Carlos A. Driscoll, Marilyn Menotti-Raymond, Alfred L. Roca, Karsten Hupe, Warren E. Johnson, Eli Geffen, Eric H. Harley, M. Delibes, Dominique Pontier, Andrew C. Kitchener, Nobuyuki Yamaguchi, Stephen J. O'Brien, and David W. Macdonald

Selfish Punishment: Altruism Can be Maintained by Competition Among Cheaters, Omar Tonsi Eldakar, Dene Leo Farrell, and David Sloan Wilson

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Preliminary Observations on the Reproductive Cycle and Uterine Fecundity of the Yellow Stingray, Urobatis jamaicensis (Elasmobranchii: Mylioba tiformes: Urolophidae) in Southeast Florida, U.S.A., Daniel P. Fahy, Richard E. Spieler, and William C. Hamlett

Polymorphic Microsatellite Markers for Studies of the Conservation and Reproductive Genetics of Imperilled Sand Tiger Sharks (Carcharias taurus), Kevin A. Feldheim, Adam J. Stow, Heidi Ahonen, Demian D. Chapman, Mahmood S. Shivji, Vic Peddemors, and Sabine Wintner

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From Atabey to Hatuey: Manifestations of the Indigenous in Cuban Art and Literature, Yvette Fuentes

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From Cuba with Love: Representing Cubanía and the Cuban-Soviet Experience in Contemporary Cuban Literature, Yvette Fuentes

Globalization and Language in the Spanish-Speaking World: Macro and Micro Perspectives by Clare Mar-Molinero and Miranda Stewart, eds., Yvette Fuentes

The Initials of the Earth by Jesús Díaz, Yvette Fuentes

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Teaching in the Age of Diversity: Culture and Language as Sources of Conflict and Strength in the Classroom, Alexia Georgakopoulos

Diversity and Biogeography of the Scleractinian Coral Fauna of Easter Island (Rapa Nui), Peter W. Glynn, Gerard M. Wellington, Bernhard Riegl, Donald B. Olson, Eric Borneman, and Evie A. Wieters

Mercury Transport and Bioaccumulation in Riverbank Communities of the Alvarado Lagoon System, Veracruz State, Mexico, Jane L. Guentzel, Enrique Portilla, Katherine M. Keith, and Edward O. Keith

Habitat Utilization and Vertical Movements of White Marlin (Tetrapturus albidus) Released from Commercial and Recreational Fishing Gears in the Western North Atlantic Ocean: Inferences from Short Duration Pop-up Archival Satellite Tags, Andrij Horodysky, David W. Kerstetter, Robert J. Latour, and John E. Graves

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Mechanisms of Prescription Drug Diversion among Drug-Involved Club and Street-Based Populations, James A. Inciardi, Hilary L. Surratt, Steven P. Kurtz, and Theodore J. Cicero

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Prevalence and Diversity of Avian Hematozoan Parasites in Asia: A Regional Study, Farah Ishtiaq, Eben Gering, Jon H. Rappole, Asad R. Rahmani, Yadvendradev V. Jhala, Carla J. Dove, Christopher M. Milensky, Storrs L. Olson, Mike A. Peirce, and Robert C. Fleischer

A Quantitative Ecological Assessment of Diving Sites in the Egyptian Red Sea During a Period of Severe Anchor Damage: A Baseline for Restoration and Sustainable Tourism Management, S. C. Jameson, M. S. A. Ammar, E. Saadalla, H. M. Mostafa, and Bernhard Riegl

Four Independent Mutations in the Feline Fibroblast Growth Factor 5 Gene Determine the Long-Haired Phenotype in Domestic Cats, J. S. Kehler, Victor A. David, Alejandro A. Schaffer, Kristina Bajema, Eduardo Eizirik, David K. Ryugo, Steven S. Hannah, Stephen J. O'Brien, and Marilyn Menotti-Raymond

Evolution of the Male-Determining Gene SRY Within the Cat Family Felidae, V. King, P. N. Goodfellow, A. J. Pearks Wilkerson, Warren E. Johnson, Stephen J. O'Brien, and Jill Pecon-Slattery

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Hurricane Emergency Planning by Home Health Providers Serving the Poor, Dahlia Kirkpatrick and Marguerite Bryan

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Human Heritage and Natural Heritage in the Everglades, James A. Kushlan and Eileen Smith-Cavros

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K-41 Optimized Approximate Deconvolution Models, William Layton and Iuliana Stanculescu

Minimal Semigroups Generating Varieties with Complex Subvariety Lattices, Edmond W. H. Lee

On a Simpler Basis for the Pseudovariety EDS, Edmond W. H. Lee

On Identity Bases of Exclusion Varieties for Monoids, Edmond W. H. Lee

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On the Complete Join of Permutative Combinatorial Rees–Sushkevich Varieties, Edmond W. H. Lee

Nitrogen and Oxygen Isotopic Signatures of Subsurface Nitrate Seaward of the Florida Keys Reef Tract, James J. Leichter, Adina Paytan, Scott Wankel, Katharine Hanson, Steven Miller, and Mark A. Altabet

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First Observations on the Re-Established Southeast Florida Recreational Swordfish Tournament Fishery, Juan C. Levesquee and David W. Kerstetter

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Serial Sexual Murderers and Prostitutes as their Victims: Difficulty Profiling Perpetrators and Victim Vulnerability as Illustrated by the Green River Case, Micol Levi-Minzi and Maria A. Shields Levi-Minzi

The Risk of Polyspermy in Three Congeneric Sea Urchins and its Implications for Gametic Incompatibility and Reproductive Isolation, Don R. Levitan, Casey P. terHorst, and Nicole D. Fogarty

Experimental Observation of Synchronous Competition in the Chua System, Zheng Le, Victor Castro, William B. Pardo, Jonathan A. Walkenstein, Marco Monti, and Epaminondas Rosa Jr.

The Energy Sensing LKB1-AMPK Pathway Regulates p27kip1 Phosphorylation Mediating the Decision to Enter Autophagy or Apoptosis, Jiyong Liang, Shan H. Shao, Zhi-Xiang Xu, Bryan Hennessy, Zhiyong Ding, and Michelle D. Larrea

Signal transduction in DC differentiation: winged messengers and Achilles' heel, I. Linder, P. J. Cejas, L. M. Carlson, J. Torruellas, G. V. Plano, and K. P. Lee

Modulation of dendritic cell differentiation and function by YopJ of Yersinia pestis, I. Linder, Julie Torruellas Garcia, D. Kolonias, L. M. Carlson, and K. P. Lee

Elevated Male European and Female African Contributions to the Genomes of African American Individuals, Joanne M. Lind, Holli Hutcheson-Dilks, Scott M. Williams, Jason H. Moore, Myron Essex, Eduardo Ruiz-Pesini, Douglas C. Wallace, Sarah A. Tishkoff, Stephen J. O'Brien, and Michael W. Smith

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Signal transduction in DC differentiation: winged messengers and Achilles' heel, Inna Lindner, Pedro J. Cejas, Louise M. Carlson, Julie Torruellas Garcia, Gregory V. Plano, and Kelvin P. Lee

Caudal Spine Shedding Periodicity and Site Fidelity of Round Stingrays, Urobatis halleri (Cooper), at Seal Beach, California: Implications for Stingray-related Injury Management, Christopher G. Lowe, Greg J. Moss, Greg Hoisington IV, Jeremy Vaudo, Daniel P. Cartamil, Megan M. Marcotte, and Yannis P. Papastamatiou

Isolation and Characterization of Microsatellite Markers in Pangolins (Mammalia, Pholidota, Manis spp.), Shu-Jin Luo, Qing-xiu Cai, Victor A. David, Li Zhang, Paolo Martelli, Norman T-L. Lim, Nuno Ferrand, Shih-Chien Chin, Philippe Gaubert, Maria J. Ramos, Stephen J. O'Brien, Agostinho Antunes, and Warren E. Johnson

Development of Y Chromosome Intraspecific Polymorphic Markers in the Felidae, Shu-Jin Luo, Warren E. Johnson, Victor A. David, Marilyn Menotti-Raymond, R. Stanyon, Qing-xiu Cai, Thomas W. Beck, Naoya Yuhki, Jill Pecon-Slattery, James L. D. Smith, and Stephen J. O'Brien

Genetic Tracking of Basking Shark Products in International Trade, Jennifer E. Magnussen, Ellen K. Pikitch, S. C. Clarke, C. Nicholson, A. Rus Hoelzel, and Mahmood S. Shivji

A Mutation in KIR3DS1 That Results in Truncation and Lack of Cell Surface Expression, Maureen P. Martin, Veronique Pascal, Meredith Yeager, John Phair, Gregory D. Kirk, Keith Hoots, Stephen J. O'Brien, Stephen K. Anderson, and Mary Carrington

Innate Partnership of HLA-B and KIR3DL1 Subtypes Against HIV-1, Maureen P. Martin, Ying Qi, Xiaojiang Gao, Eriko Yamada, Jeffrey N. Martin, Florencia Fereyra, Sara Colombo, Elizabeth E. Brown, W. Lesley Shupert, John Phair, James J. Goedert, Susan Buchbinder, Gregory D. Kirk, Amalio Telenti, Mark Connors, Stephen J. O'Brien, Bruce D. Walker, Peter Parham, Steven G. Deeks, Daniel W. McVicar, and Mary Carrington

Mutation in CEP290 Discovered for Cat Model of Human Retinal Degeneration, Marilyn Menotti-Raymond, Victor A. David, Alejandro A. Schaffer, R. Stephens, David Wells, Rajendra Kumar-Singh, Stephen J. O'Brien, and Kristina Narfstrom

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The Crinoid Fauna (Echinodermata: Crinoidea) of Palau, Charles G. Messing

In Situ Growth Rates in Tropical Western Atlantic Sea Lilies (Echinodermata: Crinoidea), Charles G. Messing, Jérôme David, Michel Roux, Nadia Améziane, and Tomasz K. Baumiller

A Family Matter: Conclusive Resolution of the Taxonomic Position of the Long-Fingered Bats, Miniopterus, Cassandra M. Miller-Butterworth, William J. Murphy, and Stephen J. O'Brien

A 1.5-Mb-Resolution Radiation Hybrid Map of the Cat Genome and Comparative Analysis with the Canine and Human Genomes, William J. Murphy, Brian Davis, Victor A. David, R. Agarwala, Alejandro A. Schaffer, A. J. Pearks Wilkerson, Beena A. Neelam, Stephen J. O'Brien, and Marilyn Menotti-Raymond

Designing and Optimizing Comparative Anchor Primers for Comparative Gene Mapping and Phylogenetic Inference, William J. Murphy and Stephen J. O'Brien

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Employing Spatial Metrics in Urban Land-Use / Land-Cover Mapping: Comparing the Getis and Geary Indices, Soe W. Myint, Elizabeth A. Wentz, and Samuel J. Purkis

Q&A: Stephen J. O'Brien, Stephen J. O'Brien

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The Evolution of CATS, Stephen J. O'Brien and Warren E. Johnson

The Response of Gastric pH and Motility to Fasting and Feeding in Free Swimming Blacktip Reef Sharks, Carcharhinus melanopterus, Yannis P. Papastamatiou, Samuel J. Purkis, and Kim N. Holland

Modelling Survival and Growth of Mithraculus forceps' Larvae and Juveniles (A. Milne Edwards, 1875) (Decapoda: Brachyura: Majidae) in Aquaculture, Gil Penha-Lopes, Joana Figueiredo, and Luis Narciso

Serine Sublimes with Spontaneous Chiral Amplification, Richard H. Perry, Chunping Wu, Marcela Nefliu, and R. Graham Cooks

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Initial Sequence and Comparative Analysis of the Cat Genome, J. U. Pontius, James C. Mullikin, Douglas R. Smith, Agencourt Bioscience Corporation, Kerstin Lindblad-Toh, Sante Gnerre, Michele Clamp, Jean Chang, R. Stephens, Beena A. Neelam, Natalia Volfovsky, Alejandro A. Schaffer, R. Agarwala, Kristina Narfstrom, William J. Murphy, Urs Giger, Alfred L. Roca, Agostinho Antunes, Marilyn Menotti-Raymond, Naoya Yuhki, Jill Pecon-Slattery, Warren E. Johnson, Guillaume Bourque, Glenn Tesler, NISC Comparative Sequencing Program, and Stephen J. O'Brien

Genome Annotation Resource Fields- GARFIELD: A Genome Browser for Felis catus, J. U. Pontius and Stephen J. O'Brien

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The Statistics of Natural Shapes in Modern Coral Reef Landscapes, Samuel J. Purkis, Kevin E. Kohler, Bernhard Riegl, and Steven O. Rohmann

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A little revolution, John Rennie, Richard Dawkins, Lawrence M. Krauss, Stephen J. O'Brien, Kevin E. Trenberth, and Alan Weisman

Genetic Connectivity in the Florida Reef System: Comparative Phylogeography of Commensal Invertebrates With Contrasting Reproductive Strategies, Vincent P. Richards, James Darwin Thomas, Michael J. Stanhope, and Mahmood S. Shivji

Sedimentary Facies of the Eastern Pacific's Northernmost Reef-Like Setting (Cabo Pulmo, Mexico), Bernhard Riegl, J. Halfar, Samuel J. Purkis, and L. Godinez-Orta

Bye Bye Bullies, Maribel Del Rio-Roberts

Cyto-Nuclear Genomic Dissociation and the African Elephant Species Question, Alfred L. Roca, Nicholas Georgiadis, and Stephen J. O'Brien

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Influenza Virus Targets the mRNA Export Machinery and the Nuclear Pore Complex, Neal Satterly, Pei-Ling Tsai, Jan van Deursen, Daniel R. Nussenveig, Yaming Wang, Paula A. Faria Waziry, Agata Levay, David E. Levy, and Beatriz M. A. Fontoura

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In My Own Words: Andrea Elizabeth Shaw, Andrea E. Shaw Nevins

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Reviewed Works: Kingdom of Empty Bellies by Kei Miller; 37 Poems by Lasana M. Sekou, Andrea Elizabeth Shaw-Nevins

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Teahouse of the Almighty, Andrea Elizabeth Shaw-Nevins

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Modern Black Churchgoers in Miami-Dade County, Florida: Place, Nature and Memory, Eileen M. Smith-Cavros

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Two Yeast Plasmids that Confer Nourseothricin-Dihydrogen Sulfate and Hygromycin B Resistance in Neurospora crassa and Cryphonectria parasitica, Robert P. Smith and Myron L. Smith

Coupled Renewal Model of Ocean Viscous Sublayer, Thermal Skin Effect and Interfacial Gas Transfer Velocity, Alexander Soloviev

An Approach to Estimation of Near-Surface Turbulence and CO2 Transfer Velocity from Remote Sensing Data, Alexander Soloviev, Mark A. Donelan, Hans Graber, Brian K. Haus, and Peter Schluessel

The Adequacy of Morphology for Reconstructing the Early History of Placental Mammals, Mark S. Springer, Angela Burk-Herrick, Robert Meredith, Eduardo Eizirik, Emma C. Teeling, Stephen J. O'Brien, and William J. Murphy

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The Molecular Basis of High-Altitude Adaptation in Deer Mice, Jay F. Storz, Stephen J. Sabatino, Federico G. Hoffmann, Eben Gering, Hideaki Moriyama, Nuno Ferrand, Bruno Monteiro, and Michael W. Nachman

Diversity and Specificity of Caribbean Sponge–Zoanthid Symbioses: A Foundation for Understanding the Adaptive Significance of Symbioses and Generating Hypotheses About Higher‐Order Systematics, Timothy D. Swain and Janie L. Wulff

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Genetic Protection against Hepatitis B Virus Conferred by CCR5Δ32: Evidence that CCR5 Contributes to Viral Persistence, Chloe L. Thio, Jacquie Astemborski, Arman A. Bashirova, Timothy L. Mosbruger, Spencer Greer, Mallory D. Witt, James J. Goedert, Margaret Hilgartner, Audrey Majesk, Stephen J. O'Brien, David L. Thomas, and Mary Carrington

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New Species and Host Associations of Commensal Leucothoid Amphipods from Coral Reefs in Florida and Belize (Crustacea:Amphipoda), James Darwin Thomas and Kristine N. Klebba

Cellular Reactions to Sedimentation and Temperature Stress in the Caribbean Coral Montastraea cavernosa, Bernardo Vargas-Ángel, Esther C. Peters, Esti Kramarsky-Winter, David S. Gilliam, and Richard E. Dodge

Gene Conversion Between Mammalian CCR2 and CCR5 Chemokine Receptor Genes: A Potential Mechanism for Receptor Dimerization, Nuria Vazquez-Salat, Naoya Yuhki, Thomas W. Beck, Stephen J. O'Brien, and William J. Murphy

HLA-B Bw4 Alleles and HIV-1 Transmission in Heterosexual Couples, Tania M. Welzel, Xiaojiang Gao, Ruth M. Pfeiffer, Maureen P. Martin, Stephen J. O'Brien, Mary Carrington, and Thomas R. O'Brien

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Initial Mass Function Effects on the Colour Evolution of Disk Galaxies, P. Westera, M. Samland, Stefan Kautsch, R. Buser, and K. Ammon

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Clouded Leopard Phylogeny Revisited: Support for Species Recognition and Population Division Between Borneo and Sumatra, Andreas Wilting, Valerie A. Buckley-Beason, Heike Feldhaar, Jurgen Gadau, Stephen J. O'Brien, and K. Eduard Linsenmair