RNA-seq Data Analysis for Differential Expression, Navdeep Gill, Braham Dhillon
Navdeep Gill

Differentially Expressed Genes (DEGs) Identified under High Night Temperature (HNT) and Control Conditions in 15 Rice QTLs for Grain Quality Traits, Navdeep Gill, Andy Pereira
Navdeep Gill

A Physical and Genetic Map of Cannabis sativa Identifies Extensive Rearrangements at the THC/CBD Acid Synthase Loci, Kaitlin Laverty, Jake Stout, Mitchell Sullivan, Hardik Shah, Navdeep Gill, Larry Holbrook, Gintaras Deikus, Robert Sebra, Timothy Hughes, Jonathan Page, Harm van Bakel
Navdeep Gill

Horizontal Gene Transfer and Gene Dosage Drives Adaptation to Wood Colonization in a Tree Pathogen, Braham Dhillon, Nicolas Feau, Andrea Aerts, Stéphanie Beauseigle, Louis Bernier, Alex Copeland, Adam Foster, Navdeep Gill, Bernard Henrissat, Padmini Herath, Kurt LaButti, Anthony Levasseur, Erika Lindquist, Eline Majoor, Robin Ohm, Jasmyn Pangilinan, Amadeus Pribowo, John Saddler, Monique Sakalidis, Ronald P. de Vries, Igor Grigoriev, Stephen Goodwin, Philippe Tanguay, Richard Hamelin
Navdeep Gill

The Sunflower Genome Provides Insights into Oil Metabolism, Flowering and Asterid Evolution, Hélène Badouin, Jérôme Gouzy, Christopher Grassa, Florent Murat, S. Evan Staton, Ludovic Cottret, Christine Lelandais-Brière, Gregory Owens, Sébastien Carrère, Baptiste Mayjonade, Ludovic Legrand, Navdeep Gill, Nolan Kane, John Bowers, Sariel Hubner, Arnaud Bellec, Aurélie Bérard, Hélène Bergès, Nicolas Blanchet, Marie-Claude Boniface, Dominique Brunel, Olivier Catrice, Nadia Chaidir, Clotilde Claudel, Cécile Donnadieu, Thomas Faraut, Ghislain Fievet, Nicolas Helmstetter, Matthew King, Steven Knapp, Zhao Lai, Marie-Christine Le Paslier, Yannick Lippi, Lolita Lorenzon, Jennifer Mandel, Gwenola Marage, Gwenaëlle Marchand, Elodie Marquand, Emmanuelle Bret-Mestries, Evan Morien, Savithri Nambeesan, Thuy Nguyen, Prune Pegot-Espagnet, Nicolas Pouilly, Frances Raftis, Erika Sallet, Thomas Schiex, Justine Thomas, Céline Vandecasteele, Didier Varès, Felicity Vear, Sonia Vautrin, Martin Crespi, Brigitte Mangin, John Burke, Jérôme Salse, Stéphane Muños, Patrick Vincourt, Loren Rieseberg, Nicolas Langlade
Navdeep Gill

A Massive Expansion of Effector Genes Underlies Gall-Formation in the Wheat Pest Mayetiola destructor, Chaoyang Zhao, Lucio Navarro Escalante, Hang Chen, Thiago Benatti, Jiaxin Qu, Sanjay Chellapilla, Robert Waterhouse, David Wheeler, Martin Andersson, Riyue Bao, Matthew Batterton, Susanta Behura, Kerstin Blankenburg, Doina Caragea, James Carolan, Marcus Coyle, Mustapha El-Bouhssini, Liezl Francisco, Markus Friedrich, Navdeep Gill, Tony Grace, Cornelis Grimmelikhuijzen, Yi Han, Frank Hauser, Nicolae Herndon, Michael Holder, Panagiotis Ioannidis, LaRonda Jackson, Mehwish Javaid, Shalini Jhangiani, Alisha Johnson, Divya Kalra, Viktoriya Korchina, Christie Kovar, Fremiet Lara, Sandra Lee, Xuming Liu, Christer Löfstedt, Robert Mata, Tittu Mathew, Donna Muzny, Swapnil Nagar, Lynne Nazareth, Geoffrey Okwuonu, Fiona Ongeri, Lora Perales, Brittany Peterson, Ling-Ling Pu, Hugh Robertson, Brandon Schemerhorn, Steven Scherer, Jacob Shreve, DeNard Simmons, Subhashree Subramanyam, Rebecca Thornton, Kun Xue, George Weissenberger, Christie Williams, Kim Worley, Dianhui Zhu, Yiming Zhu, Marion O. Harris, Richard Shukle, John Werren, Evgeny Zdobnov, Ming-Shun Chen, Susan Brown, Jeffery Stuart, Stephen Richards
Navdeep Gill

Molecular and Chromosomal Evidence for Allopolyploidy in Soybean, Navdeep Gill, Seth Findley, Jason G. Walling, Christian Hans, Jianxin Ma, Jeff Doyle, Gary Stacey, Scott A. Jackson
Navdeep Gill

Genome Sequence of the Palaeopolyploid Soybean, Jeremy Schmutz, Steven B. Cannon, Jessica Schlueter, Jianxin Ma, Therese Mitros, William Nelson, David L. Hyten, Qijian Song, Jay J. Thelen, Jianlin Cheng, Dong Xu, Uffe Hellsten, Gregory D. May, Yeisoo Yu, Tetsuya Sakurai, Taishi Umezawa, Madan K. Bhattacharyya, Devinder Sandhu, Babu Valliyodan, Erika Lindquist, Myron Peto, David Grant, Shengqiang Shu, David Goodstein, Kerrie Barry, Montona Futrell-Griggs, Brian Abernathy, Jianchang Du, Zhixi Tian, Liucun Zhu, Navdeep Gill, Trupti Joshi, Marc Libault, Anand Sethuraman, Xue-Cheng Zhang, Kazuo Shinozaki, Henry T. Nguyen, Rod A. Wing, Perry Cregan, James Specht, Jane Grimwood, Dan Rokhsar, Gary Stacey, Randy C. Shoemaker, Scott A. Jackson
Navdeep Gill

A Lineage-specific Centromere Retrotransposon in Oryza brachyantha, Dongying Gao, Navdeep Gill, Hye-Ran Kim, Jason G. Walling, Wenli Zhang, Chuanzhu Fan, Yeisoo Yu, Jianxin Ma, Phillip SanMiguel, Ning Jiang, Zhukuan Cheng, Rod A. Wing, Jiming Jiang, Scott A. Jackson
Navdeep Gill

A BAC-based Physical Map of the Hessian Fly Genome Anchored to Polytene Chromosomes, Rajat Aggarwal, Thiago R. Benatti, Navdeep Gill, Chaoyang Zhao, Ming-Shun Chen, John P. Fellers, Brandon J. Schemerhorn, Jeff J. Stuart
Navdeep Gill

Differentially Expressed Genes (DEGs) Identified under High Night Temperature (HNT) and Control Conditions in 15 Rice QTLs for Grain Quality Traits, Navdeep Gill, Andy Pereira
Biology Faculty Datasets

Identification of QTLs and Candidate Loci Associated with Drought-related Traits of the K/Z RIL Rice Population, Yheni Dwiningsih, Julie Thomas, Anuj Kumar, Chirag Gupta, Navdeep Gill, Charles Ruiz, Jawaher Alkahtani, Niranjan Baisakh, Andy Pereira
Biology Faculty Articles

RNA-seq Data Analysis for Differential Expression, Navdeep Gill, Braham Dhillon
Biology Faculty Books and Book Chapters

A Physical and Genetic Map of Cannabis sativa Identifies Extensive Rearrangements at the THC/CBD Acid Synthase Loci, Kaitlin Laverty, Jake Stout, Mitchell Sullivan, Hardik Shah, Navdeep Gill, Larry Holbrook, Gintaras Deikus, Robert Sebra, Timothy Hughes, Jonathan Page, Harm van Bakel
Biology Faculty Articles

The Sunflower Genome Provides Insights into Oil Metabolism, Flowering and Asterid Evolution, Hélène Badouin, Jérôme Gouzy, Christopher Grassa, Florent Murat, S. Evan Staton, Ludovic Cottret, Christine Lelandais-Brière, Gregory Owens, Sébastien Carrère, Baptiste Mayjonade, Ludovic Legrand, Navdeep Gill, Nolan Kane, John Bowers, Sariel Hubner, Arnaud Bellec, Aurélie Bérard, Hélène Bergès, Nicolas Blanchet, Marie-Claude Boniface, Dominique Brunel, Olivier Catrice, Nadia Chaidir, Clotilde Claudel, Cécile Donnadieu, Thomas Faraut, Ghislain Fievet, Nicolas Helmstetter, Matthew King, Steven Knapp, Zhao Lai, Marie-Christine Le Paslier, Yannick Lippi, Lolita Lorenzon, Jennifer Mandel, Gwenola Marage, Gwenaëlle Marchand, Elodie Marquand, Emmanuelle Bret-Mestries, Evan Morien, Savithri Nambeesan, Thuy Nguyen, Prune Pegot-Espagnet, Nicolas Pouilly, Frances Raftis, Erika Sallet, Thomas Schiex, Justine Thomas, Céline Vandecasteele, Didier Varès, Felicity Vear, Sonia Vautrin, Martin Crespi, Brigitte Mangin, John Burke, Jérôme Salse, Stéphane Muños, Patrick Vincourt, Loren Rieseberg, Nicolas Langlade
Biology Faculty Articles

Horizontal Gene Transfer and Gene Dosage Drives Adaptation to Wood Colonization in a Tree Pathogen, Braham Dhillon, Nicolas Feau, Andrea Aerts, Stéphanie Beauseigle, Louis Bernier, Alex Copeland, Adam Foster, Navdeep Gill, Bernard Henrissat, Padmini Herath, Kurt LaButti, Anthony Levasseur, Erika Lindquist, Eline Majoor, Robin Ohm, Jasmyn Pangilinan, Amadeus Pribowo, John Saddler, Monique Sakalidis, Ronald P. de Vries, Igor Grigoriev, Stephen Goodwin, Philippe Tanguay, Richard Hamelin
Biology Faculty Articles

A Massive Expansion of Effector Genes Underlies Gall-Formation in the Wheat Pest Mayetiola destructor, Chaoyang Zhao, Lucio Navarro Escalante, Hang Chen, Thiago Benatti, Jiaxin Qu, Sanjay Chellapilla, Robert Waterhouse, David Wheeler, Martin Andersson, Riyue Bao, Matthew Batterton, Susanta Behura, Kerstin Blankenburg, Doina Caragea, James Carolan, Marcus Coyle, Mustapha El-Bouhssini, Liezl Francisco, Markus Friedrich, Navdeep Gill, Tony Grace, Cornelis Grimmelikhuijzen, Yi Han, Frank Hauser, Nicolae Herndon, Michael Holder, Panagiotis Ioannidis, LaRonda Jackson, Mehwish Javaid, Shalini Jhangiani, Alisha Johnson, Divya Kalra, Viktoriya Korchina, Christie Kovar, Fremiet Lara, Sandra Lee, Xuming Liu, Christer Löfstedt, Robert Mata, Tittu Mathew, Donna Muzny, Swapnil Nagar, Lynne Nazareth, Geoffrey Okwuonu, Fiona Ongeri, Lora Perales, Brittany Peterson, Ling-Ling Pu, Hugh Robertson, Brandon Schemerhorn, Steven Scherer, Jacob Shreve, DeNard Simmons, Subhashree Subramanyam, Rebecca Thornton, Kun Xue, George Weissenberger, Christie Williams, Kim Worley, Dianhui Zhu, Yiming Zhu, Marion O. Harris, Richard Shukle, John Werren, Evgeny Zdobnov, Ming-Shun Chen, Susan Brown, Jeffery Stuart, Stephen Richards
Biology Faculty Articles

Landscape of Transposable Elements in Mycosphaerella graminicola, Braham Dhillon, Navdeep Gill, Richard Hamelin, Stephen Goodwin
Biology Faculty Articles

Sequence-Based Analysis of Structural Organization and Composition of the Cultivated Sunflower (Helianthus annuus L.) Genome, Navdeep Gill, Matteo Buti, Nolan Kane, Arnaud Bellec, Nicolas Helmstetter, Hélène Berges, Loren Rieseberg
Biology Faculty Articles

The Repetitive Component of the Sunflower Genome as Shown by Different Procedures for Assembling Next Generation Sequencing Reads, Lucia Natali, Rosa Maria Cossu, Elena Barghini, Tommaso Giordani, Matteo Buti, Flavia Mascagni, Michele Morgante, Navdeep Gill, Nolan Kane, Loren Rieseberg, Andrea Cavallini
Biology Faculty Articles

Transposon Fingerprinting Using Low Coverage Whole Genome Shotgun Sequencing in Cacao (Theobroma cacao L.) and Related Species, Saemundur Sveinsson, Navdeep Gill, Nolan Kane, Quentin Cronk
Biology Faculty Articles

Functional and Structural Divergence of an Unusual LTR Retrotransposon Family in Plants, Dongying Gao, Jose Jimenez-Lopez, Aiko Iwata, Navdeep Gill, Scott Jackson
Biology Faculty Articles

Progress Towards a Reference Genome for Sunflower, N. C. Kane, Navdeep Gill, M. G. King, J. E. Bowers, H. Berges, J. Gouzy, E. Bachlava, N. B. Langlade, Z. Lai, M. Stewart, J. M. Burke, C. Vincourt, S. J. Knapp, L. H. Rieseberg
Biology Faculty Articles

Genome Sequence of the Palaeopolyploid Soybean, Jeremy Schmutz, Steven B. Cannon, Jessica Schlueter, Jianxin Ma, Therese Mitros, William Nelson, David L. Hyten, Qijian Song, Jay J. Thelen, Jianlin Cheng, Dong Xu, Uffe Hellsten, Gregory D. May, Yeisoo Yu, Tetsuya Sakurai, Taishi Umezawa, Madan K. Bhattacharyya, Devinder Sandhu, Babu Valliyodan, Erika Lindquist, Myron Peto, David Grant, Shengqiang Shu, David Goodstein, Kerrie Barry, Montona Futrell-Griggs, Brian Abernathy, Jianchang Du, Zhixi Tian, Liucun Zhu, Navdeep Gill, Trupti Joshi, Marc Libault, Anand Sethuraman, Xue-Cheng Zhang, Kazuo Shinozaki, Henry T. Nguyen, Rod A. Wing, Perry Cregan, James Specht, Jane Grimwood, Dan Rokhsar, Gary Stacey, Randy C. Shoemaker, Scott A. Jackson
Biology Faculty Articles

A Lineage-specific Centromere Retrotransposon in Oryza brachyantha, Dongying Gao, Navdeep Gill, Hye-Ran Kim, Jason G. Walling, Wenli Zhang, Chuanzhu Fan, Yeisoo Yu, Jianxin Ma, Phillip SanMiguel, Ning Jiang, Zhukuan Cheng, Rod A. Wing, Jiming Jiang, Scott A. Jackson
Biology Faculty Articles

Molecular and Chromosomal Evidence for Allopolyploidy in Soybean, Navdeep Gill, Seth Findley, Jason G. Walling, Christian Hans, Jianxin Ma, Jeff Doyle, Gary Stacey, Scott A. Jackson
Biology Faculty Articles

A BAC-based Physical Map of the Hessian Fly Genome Anchored to Polytene Chromosomes, Rajat Aggarwal, Thiago R. Benatti, Navdeep Gill, Chaoyang Zhao, Ming-Shun Chen, John P. Fellers, Brandon J. Schemerhorn, Jeff J. Stuart
Biology Faculty Articles

An Overview of Plant Chromosome Structure, Navdeep Gill, C. S. Hans, S. Jackson
Biology Faculty Articles

Construction, Alignment and Analysis of Twelve Framework Physical Maps that Represent the Ten Genome Types of the Genus Oryza, HyeRan Kim, Bonnie Hurwitz, Yeisoo Yu, Kristi Collura, Navdeep Gill, Phillip SanMiguel, James C. Mullikin, Christopher Maher, William Nelson, Marina Wissotski, Michele Braidotti, David Kudrna, José Luis Goicoechea, Lincoln Stein, Doreen Ware, Scott A. Jackson, Carol Soderlund, Rod A. Wing
Biology Faculty Articles

BAC-end Sequence Analysis and a Draft Physical Map of the Common Bean (Phaseolus vulgaris L.) Genome, Jessica A. Schlueter, Jose Luis Goicoechea, Kristi Collura, Navdeep Gill, Jer-Young Lin, Yeisoo Yu, Dave Kudrna, Andrea Zuccolo, C. Eduardo Vallejos, Monica Muñoz-Torres, Matthew W. Blair, Joe Tohme, Jeff Tomkins, Phillip McClean, Rod A. Wing, Scott A. Jackson
Biology Faculty Articles

Integration of Hybridization-based Markers (Overgos) Into Physical Maps for Comparative and Evolutionary Explorations in the Genus Oryza and in Sorghum, Barbara L. Hass-Jacobus, Montona Futrell-Griggs, Brian Abernathy, Rick Westerman, Jose-Luis Goicoechea, Joshua Stein, Patricia Klein, Bonnie Hurwitz, Bin Zhou, Fariborz Rakhshan, Abhijit Sanyal, Navdeep Gill, Jer-Young Lin, Jason G. Walling, Mei Zhong Luo, Jetty Siva S Ammiraju, Dave Kudrna, Hye Ran Kim, Doreen Ware, Rod A. Wing, Phillip San Miguel, Scott A. Jackson
Biology Faculty Articles

The Oryza Bacterial Artificial Chromosome Library Resource: Construction and Analysis of 12 Deep-coverage Large-insert Bac Libraries That Represent the 10 Genome Types of the Genus Oryza, Jetty S.S. Ammiraju, Meizhong Luo, José L. Goicoechea, Wenming Wang, Dave Kudrna, Christopher Mueller, Jayson Talag, HyeRan Kim, Nicholas B. Sisneros, Barbara Blackmon, Eric Fang, Jeffery B. Tomkins, Darshan Brar, David MacKill, Susan McCouch, Nori Kurata, Georgina Lambert, David W. Galbraith, K. Arumuganathan, Kiran Rao, Jason G. Walling, Navdeep Gill, Yeisoo Yu, Phillip SanMiguel, Carol Soderlund, Scott Jackson, Rod A. Wing
Biology Faculty Articles