Commentary: Unbiasing Genome-Based Analyses of Selection: An Example Using Iconic Shark Species, Nicholas J. Marra, Michael J. Stanhope, Nathaniel K. Jue, Vincent P. Richards, Stephen J. O'Brien, Agostinho Antunes, Mahmood S. Shivji
Stephen O'Brien

An STR forensic typing system for genetic individualization of domestic cat (Felis catus) samples, Marilyn A. Menotti-Raymond, Victor A. David, Leslie L. Wachter, John M. Butler, Stephen J. O'Brien
Stephen O'Brien

A little revolution, John Rennie, Richard Dawkins, Lawrence M. Krauss, Stephen J. O'Brien, Kevin E. Trenberth, Alan Weisman
Stephen O'Brien

Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments, Rui Borges, Warren E. Johnson, Stephen J. O'Brien, Cidália Gomes, Christopher P. Heesy, Agostinho Antunes
Stephen O'Brien

Genetic acceleration of AIDS progression by a promoter variant of CCR5, Stephen J. O'Brien
Stephen O'Brien

Foreword, Stephen J. O'Brien
Stephen O'Brien

Editorial overview, Stephen J. O'Brien, Michael T. Clegg
Stephen O'Brien

Genome-Wide Evolutionary Analysis of Natural History and Adaptation in the World's Tigers, Yue Chen Liu, Xin Sun, Carlos Driscoll, Dale G. Miquelle, Xiao Xu, Paolo Martelli, Olga Uphyrkina, James L.D. Smith, Stephen J. O'Brien, Shu Jin Luo
Stephen O'Brien

Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa, Wen Xie, Denis Agniel, Andrey Shevchenko, Sergey V. Malov, Anton Svitin, Nikolay Cherkasov, Marianna K. Baum, Adriana Campa, Simani Gaseitsiwe, Hermann Bussmann, Joseph Makhema, Richard Marlink, Vladimir Novitsky, Tun Hou Lee, Tianxi Cai, Stephen J. O'Brien, M. Essex
Stephen O'Brien

Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species, David Haussler, Stephen J. O'Brien, Oliver A. Ryder, F. Keith Barker, Michele Clamp, Andrew J. Crawford, Robert Hanner, Olivier Hanotte, Warren E. Johnson, Jimmy A. McGuire, Webb Miller, Robert W. Murphy, William J. Murphy, Frederick H. Sheldon, Barry Sinervo, Byrappa Venkatesh, Edward O. Wiley, Fred W. Allendorf, George Amato, C. Scott Baker, Aaron Bauer, Albano Beja-Pereira, Eldredge Bermingham, Giacomo Bernardi, Cibele R. Bonvicino, Sydney Brenner, Terry Burke, Joel Cracraft, Mark Diekhans
Stephen O'Brien

Genome-wide signatures of complex introgression and adaptive evolution in the big cats, Henrique V. Figueiró, Gang Li, Fernanda J. Trindade, Juliana Assis, Fabiano Pais, Gabriel Fernandes, Sarah H.D. Santos, Graham M. Hughes, Aleksey Komissarov, Agostinho Antunes, Cristine S. Trinca, Maíra R. Rodrigues, Tyler Linderoth, Ke Bi, Leandro Silveira, Fernando C.C. Azevedo, Daniel Kantek, Emiliano Ramalho, Ricardo A. Brassaloti, Priscilla M.S. Villela, Adauto L.V. Nunes, Rodrigo H.F. Teixeira, Ronaldo G. Morato, Damian Loska, Patricia Saragüeta, Toni Gabaldón, Emma C. Teeling, Stephen J. O'Brien, Rasmus Nielsen
Stephen O'Brien

Genome-Wide Association Study of MKI67 Expression and its Clinical Implications in HBV-Related Hepatocellular Carcinoma in Southern China, Cheng Kun Yang, Ting Dong Yu, Chuang Ye Han, Wei Qin, Xi Wen Liao, Long Yu, Xiao Guang Liu, Guang Zhi Zhu, Hao Su, Si Cong Lu, Zhi Wei Chen, Zhen Liu, Ke Tuan Huang, Zheng Tao Liu, Yu Liang, Jian Lu Huang, Zeng Nan Mo, Xue Qin, Lequn Li, Kai Yin Xiao, Min Hao Peng, Cheryl Ann Winkle, Stephen J. O'Brien, Tao Peng
Stephen O'Brien

Genetic individualization of domestic cats using feline STR loci for forensic applications, Marilyn Menotti-Raymond, Victor A. David, J. Claiborne Stephens, Leslie A. Lyons, Stephen J. O'Brien
Stephen O'Brien

Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens, Ross Barnett, Michael V. Westbury, Marcela Sandoval-Velasco, Filipe Garrett Vieira, Sungwon Jeon, Grant Zazula, Michael D. Martin, Simon Y.W. Ho, Niklas Mather, Shyam Gopalakrishnan, Jazmín Ramos-Madrigal, Marc de Manuel, M. Lisandra Zepeda-Mendoza, Agostinho Antunes, Aldo Carmona Baez, Binia De Cahsan, Greger Larson, Stephen J. O'Brien, Eduardo Eizirik, Warren E. Johnson, Klaus Peter Koepfli, Andreas Wilting, Jörns Fickel, Love Dalén, Eline D. Lorenzen, Tomas Marques-Bonet, Anders J. Hansen, Guojie Zhang, Jong Bhak
Stephen O'Brien

Integrated analysis of competing endogenous RNA network revealing potential prognostic biomarkers of hepatocellular carcinoma, Xiwen Liao, Xiangkun Wang, Ketuan Huang, Chuangye Han, Jianlong Deng, Tingdong Yu, Chengkun Yang, Rui Huang, Xiaoguang Liu, Long Yu, Guangzhi Zhu, Hao Su, Wei Qin, Xianmin Zeng, Bowen Han, Quanfa Han, Zhengqian Liu, Xin Zhou, Yizhen Gong, Zhengtao Liu, Jianlv Huang, Cheryl A. Winkler, Stephen J. O'Brien, Xinping Ye, Tao Peng
Stephen O'Brien

Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola, Kirill Grigorev, Sergey Kliver, Pavel Dobrynin, Aleksey Komissarov, Walter Wolfsberger, Ksenia Krasheninnikova, Yashira M. Afanador-Hernández, Adam L. Brandt, Liz A. Paulino, Rosanna Carreras, Luis E. Rodríguez, Adrell Núñez, Jessica R. Brandt, Filipe Silva, J. David Hernández-Martich, Audrey J. Majeske, Agostinho Antunes, Alfred L. Roca, Stephen J. O'Brien, Juan Carlos Martínez-Cruzado, Taras K. Oleksyk
Stephen O'Brien

PGD: a pangolin genome hub for the research community, Tze King Tan, Ka Yun Tan, Ranjeev Hari, Aini Mohamed Yusoff, Guat Jah Wong, Cheuk Chuen Siow, Naresh V.R. Mutha, Mike Rayko, Aleksey Komissarov, Pavel Dobrynin, Ksenia Krasheninnikova, Gaik Tamazian, Ian C. Paterson, Wesley C. Warren, Warren E. Johnson, Stephen J. O'Brien, Siew Woh Choo
Stephen O'Brien

Reply:, Xiuchan Guo, Randy Johnson, Stephen J. O'Brien
Stephen O'Brien

Response [3], Stephen J. O'Brien, Ernst Mayr
Stephen O'Brien

Preoperative transcatheter arterial chemotherapy may suppress oxidative stress in hepatocellular carcinoma cells and reduce the risk of short-term relapse, Hao Su, Guangzhi Zhu, Ketut Indra Djaja P, Yi Lin, Yizhen Gong, Xiaoguang Liu, Jiaquan Li, Zhiming Liu, Xiao Qin, Lequn Li, Tangwei Liu, Zili Lu, Minyi Wei, Lunan Yan, Cheryl Ann Winkler, Stephen J. O'Brien, Jing Li, Kaiyin Xiao, Tao Peng
Stephen O'Brien

Phylogeographic subspecies recognition in leopards (Panthera pardus): Molecular genetic variation, Sriyanie Miththapala, John Seidensticker, Stephen J. O'Brien
Stephen O'Brien

Patterns of Feline Immunodeficiency Virus Multiple Infection and Genome Divergence in a Free-Ranging Population of African Lions, Jennifer L. Troyer, Jill Pecon-Slattery, Melody E. Roelke, Lori Black, Craig Packer, Stephen J. O'Brien
Stephen O'Brien

The family line: The human-cat connection, Stephen J. O'Brien
Stephen O'Brien

The Population Origins and Expansion of Feral Cats in Australia, Peter B.S. Spencer, Andrey A. Yurchenko, Victor A. David, Rachael Scott, Klaus Peter Koepfli, Carlos Driscoll, Stephen J. O'Brien, Marilyn Menotti-Raymond
Stephen O'Brien

Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A resource for monitoring diversity in ex situ and in situ populations, Klaus Peter Koepfli, Gaik Tamazian, David Wildt, Pavel Dobrynin, Changhoon Kim, Paul B. Frandsen, Raquel Godinho, Andrey A. Yurchenko, Aleksey Komissarov, Ksenia Krasheninnikova, Sergei Kliver, Sofia Kolchanova, Margarida Gonçalves, Miguel Carneiro, Pedro Vaz Pinto, Nuno Ferrand, Jesús E. Maldonado, Gina M. Ferrie, Leona Chemnick, Oliver A. Ryder, Warren E. Johnson, Pierre Comizzoli, Stephen J. O'Brien, Budhan S. Pukazhenthi
Stephen O'Brien

The Complete Phylogeny of Pangolins: Scaling Up Resources for the Molecular Tracing of the Most Trafficked Mammals on Earth, Philippe Gaubert, Agostinho Antunes, Hao Meng, Lin Miao, Stéphane Peigné, Fabienne Justy, Flobert Njiokou, Sylvain Dufour, Emmanuel Danquah, Jayanthi Alahakoon, Erik Verheyen, William T. Stanley, Stephen J. O'Brien, Warren E. Johnson, Shu Jin Luo
Stephen O'Brien

Response to Comment by Faurby, Werdelin and Svenning, Stephen J. O'Brien, Klaus Peter Koepfli, Eduardo Eizirik, Warren Johnson, Carlos Driscoll, Agostinho Antunes, Anne Schmidt-Kuntzel, Laurie Marker, Pavel Dobrynin
Stephen O'Brien

Seroprevalence of Bartonella infection in American free-ranging and captive pumas (Felis concolor) and bobcats (Lynx rufus), Bruno B. Chomel, Yoko Kikuchi, Janice S. Martenson, Melodie E. Roelke-Parker, Chao Chin Chang, Rickie W. Kasten, Janet E. Foley, John Laudre, Kerry Murphy, Pamela K. Swift, Vicki L. Kramer, Stephen J. O'Brien
Stephen O'Brien

The evolutionary history of extinct and living lions, Marc de Manuel, Ross Barnett, Marcela Sandoval-Velasco, Nobuyuki Yamaguchi, Filipe Garrett Vieira, M. Lisandra Zepeda Mendoza, Shiping Liu, Michael D. Martin, Mikkel Holger S. Sinding, Sarah S.T. Mak, Christian Carøe, Shanlin Liu, Chunxue Guo, Jiao Zheng, Grant Zazula, Gennady Baryshnikov, Eduardo Eizirik, Klaus Peter Koepfli, Warren E. Johnson, Agostinho Antunes, Thomas Sicheritz-Ponten, Shyam Gopalakrishnan, Greger Larson, Huanming Yang, Stephen J. O'Brien, Anders J. Hansen, Guojie Zhang, Tomas Marques-Bonet, M. Thomas P. Gilbert
Stephen O'Brien

The paired label assay for cell surface antigens, Stephen J. O'Brien, Charles W. Boone, Janice M. Simonson, Faye C. Austin
Stephen O'Brien

The genome-wide analysis of carcinoembryonic antigen signaling by colorectal cancer cells using RNA sequencing, Olga Bajenova, Anna Gorbunova, Igor Evsyukov, Michael Rayko, Svetlana Gapon, Ekaterina Bozhokina, Alexander Shishkin, Stephen J. O'Brien
Stephen O'Brien

Tissue sampling methods and standards for vertebrate genomics, Pamela B.Y. Wong, Edward O. Wiley, Warren E. Johnson, Oliver A. Ryder, Stephen J. O'Brien, David Haussler, Klaus Peter Koepfli, Marlys L. Houck, Polina Perelman, Gabriela Mastromonaco, Andrew C. Bentley, Byrappa Venkatesh, Ya Ping Zhang, Robert W. Murphy
Stephen O'Brien

Commentary: Unbiasing Genome-Based Analyses of Selection: An Example Using Iconic Shark Species, Nicholas J. Marra, Michael J. Stanhope, Nathaniel K. Jue, Vincent P. Richards, Stephen J. O'Brien, Agostinho Antunes, Mahmood S. Shivji
Mahmood Shivji

Commentary: Unbiasing Genome-Based Analyses of Selection: An Example Using Iconic Shark Species, Nicholas J. Marra, Michael J. Stanhope, Nathaniel K. Jue, Vincent P. Richards, Stephen J. O'Brien, Agostinho Antunes, Mahmood S. Shivji
Biology Faculty Articles

Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens, Ross Barnett, Michael V. Westbury, Marcela Sandoval-Velasco, Filipe Garrett Vieira, Sungwon Jeon, Grant Zazula, Michael D. Martin, Simon Y.W. Ho, Niklas Mather, Shyam Gopalakrishnan, Jazmín Ramos-Madrigal, Marc de Manuel, M. Lisandra Zepeda-Mendoza, Agostinho Antunes, Aldo Carmona Baez, Binia De Cahsan, Greger Larson, Stephen J. O'Brien, Eduardo Eizirik, Warren E. Johnson, Klaus Peter Koepfli, Andreas Wilting, Jörns Fickel, Love Dalén, Eline D. Lorenzen, Tomas Marques-Bonet, Anders J. Hansen, Guojie Zhang, Jong Bhak
Biology Faculty Articles

The evolutionary history of extinct and living lions, Marc de Manuel, Ross Barnett, Marcela Sandoval-Velasco, Nobuyuki Yamaguchi, Filipe Garrett Vieira, M. Lisandra Zepeda Mendoza, Shiping Liu, Michael D. Martin, Mikkel Holger S. Sinding, Sarah S.T. Mak, Christian Carøe, Shanlin Liu, Chunxue Guo, Jiao Zheng, Grant Zazula, Gennady Baryshnikov, Eduardo Eizirik, Klaus Peter Koepfli, Warren E. Johnson, Agostinho Antunes, Thomas Sicheritz-Ponten, Shyam Gopalakrishnan, Greger Larson, Huanming Yang, Stephen J. O'Brien, Anders J. Hansen, Guojie Zhang, Tomas Marques-Bonet, M. Thomas P. Gilbert
Biology Faculty Articles

Integrated analysis of competing endogenous RNA network revealing potential prognostic biomarkers of hepatocellular carcinoma, Xiwen Liao, Xiangkun Wang, Ketuan Huang, Chuangye Han, Jianlong Deng, Tingdong Yu, Chengkun Yang, Rui Huang, Xiaoguang Liu, Long Yu, Guangzhi Zhu, Hao Su, Wei Qin, Xianmin Zeng, Bowen Han, Quanfa Han, Zhengqian Liu, Xin Zhou, Yizhen Gong, Zhengtao Liu, Jianlv Huang, Cheryl A. Winkler, Stephen J. O'Brien, Xinping Ye, Tao Peng
Biology Faculty Articles

Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A resource for monitoring diversity in ex situ and in situ populations, Klaus Peter Koepfli, Gaik Tamazian, David Wildt, Pavel Dobrynin, Changhoon Kim, Paul B. Frandsen, Raquel Godinho, Andrey A. Yurchenko, Aleksey Komissarov, Ksenia Krasheninnikova, Sergei Kliver, Sofia Kolchanova, Margarida Gonçalves, Miguel Carneiro, Pedro Vaz Pinto, Nuno Ferrand, Jesús E. Maldonado, Gina M. Ferrie, Leona Chemnick, Oliver A. Ryder, Warren E. Johnson, Pierre Comizzoli, Stephen J. O'Brien, Budhan S. Pukazhenthi
Biology Faculty Articles

Genome-Wide Evolutionary Analysis of Natural History and Adaptation in the World's Tigers, Yue Chen Liu, Xin Sun, Carlos Driscoll, Dale G. Miquelle, Xiao Xu, Paolo Martelli, Olga Uphyrkina, James L.D. Smith, Stephen J. O'Brien, Shu Jin Luo
Biology Faculty Articles

Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola, Kirill Grigorev, Sergey Kliver, Pavel Dobrynin, Aleksey Komissarov, Walter Wolfsberger, Ksenia Krasheninnikova, Yashira M. Afanador-Hernández, Adam L. Brandt, Liz A. Paulino, Rosanna Carreras, Luis E. Rodríguez, Adrell Núñez, Jessica R. Brandt, Filipe Silva, J. David Hernández-Martich, Audrey J. Majeske, Agostinho Antunes, Alfred L. Roca, Stephen J. O'Brien, Juan Carlos Martínez-Cruzado, Taras K. Oleksyk
Biology Faculty Articles

The Complete Phylogeny of Pangolins: Scaling Up Resources for the Molecular Tracing of the Most Trafficked Mammals on Earth, Philippe Gaubert, Agostinho Antunes, Hao Meng, Lin Miao, Stéphane Peigné, Fabienne Justy, Flobert Njiokou, Sylvain Dufour, Emmanuel Danquah, Jayanthi Alahakoon, Erik Verheyen, William T. Stanley, Stephen J. O'Brien, Warren E. Johnson, Shu Jin Luo
Biology Faculty Articles

Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments, Rui Borges, Warren E. Johnson, Stephen J. O'Brien, Cidália Gomes, Christopher P. Heesy, Agostinho Antunes
Biology Faculty Articles

Foreword, Stephen J. O'Brien
Biology Faculty Articles

Complete Nucleotide Sequences of the Domestic Cat (Felis catus) Mitochondrial Genome and a Transposed mtDNA Tandem Repeat (Numt) in the Nuclear Genome, Jose V. Lopez, Stanley Cevario, Stephen J. O'Brien
Jose Lopez

The Long and Short of Nuclear Mitochondrial DNA (Numt) Lineages, Jose V. Lopez, J. Claiborne Stephens, Stephen J. O'Brien
Jose Lopez

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding, Shubha Vij, Heiner Kuhl, Inna S. Kuznetsova, Aleksey Komissarov, Andrey A. Yurchenko, Peter Van Heusden, Siddharth Singh, Natascha May Thevasagayam, Sai Rama Sridatta Prakki, Kathiresan Purushothaman, Jolly M. Saju, Junhui Jiang, Stanley Kimbung Mbandi, Mario Jonas, Amy Hin Yan Tong, Sarah Mwangi, Doreen Lau, Si Yan Ngoh, Woei Chang Liew, Xueyan Shen, Lawrence S. Hon, James P. Drake, Matthew Boitano, Richard Hall, Chen-Shan Chin, Ramkumar Lachumanan, Jonas Korlach, Vladimir Trifonov, Marsel Kabilov, Alexey Tupikin, Darrell Green, Simon Moxon, Tyler Garvin, Fritz J. Sedlazeck, Gregory W. Vurture, Gopikrishna Gopalapillai, Vinaya Kumar Katneni, Tansyn H. Noble, Vinod Scaria, Sridhar Sivasubbu, Dean R. Jerry, Stephen J. O'Brien, Michael C. Schatz, Tamas Dalmay, Stephen W. Turner, Si Lok, Alan Christoffels, Laszlo Orban
Stephen O'Brien

A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination, Gang Li, LaDeana W. Hillier, Robert A. Grahn, Aleksey V. Zimin, Victor A. David, Marilyn Menotti-Raymond, Rondo Middleton, Steven S. Hannah, Sher L. Hendrickson, Alexey Makunin, Stephen J. O'Brien, Patrick Minx, Richard K. Wilson, Leslie A. Lyons, Wesley C. Warren, William J. Murphy
Stephen O'Brien

Continued Decline in Genetic Diversity Among Wild Cheetahs (Acinonyx jubatus) Without Further Loss of Semen Quality, Kimberly A. Terrell, Adrienne E. Crosier, David E. Wildt, Stephen J. O'Brien, Nicola M. Anthony, Laurie Marker, Warren E. Johnson
Stephen O'Brien

Chromosomer: A Reference-Based Genome Arrangement Tool for Producing Draft Chromosome Sequences, Gaik Tamazian, Pavel Dobrynin, Ksenia Krasheninnikova, Aleksey Komissarov, Klaus-Peter Koepfli, Stephen J. O'Brien
Stephen O'Brien

Genetic Ancestry of the Extinct Javan and Bali Tigers, Hao-Ran Xue, Nobuyuki Yamaguchi, Carlos A. Driscoll, Yu Han, Gila Kahila Bar-Gal, Yan Zhuang, Ji H. Mazak, David W. Macdonald, Stephen J. O'Brien, Shu-Jin Luo
Stephen O'Brien

De Novo Sequencing, Assembly and Analysis of Eight Different Transcriptomes from the Malayan Pangolin, Aini Mohamed Yusoff, Tze King Tan, Ranjeev Hari, Klaus-Peter Koepfli, Wei Yee Wee, Agostinho Antunes, Frankie Thomas Sitam, Jeffrine Japning Rovie-Ryan, Kayal Vizi Karuppannan, Guat Jah Wong, Leonard Lipovich, Wesley C. Warren, Stephen J. O'Brien, Siew Woh Choo
Stephen O'Brien

Conservation Genetics of the Cheetah: Lessons Learned and New Opportunities, Stephen J. O'Brien, Warren E. Johnson, Carlos A. Driscoll, Pavel Dobrynin, Laurie Marker
Stephen O'Brien

A Mutation in LTBP2 Causes Congenital Glaucoma in Domestic Cats (Felis catus), Markus H. Kuehn, Koren A. Lipsett, Marilyn Menotti-Raymond, S. Scott Whitmore, Todd E. Scheetz, Victor A. David, Stephen J. O'Brien, Zhongyuan Zhao, Jackie K. Jens, Elizabeth M. Snella, N. Matthew Ellinwood, Gillian J. McLellan
Stephen O'Brien

Development of MHC-Linked Microsatellite Markers in the Domestic Cat and Their Use to Evaluate MHC Diversity in Domestic Cats, Cheetahs, and Gir Lions, Katrina M. Morris, Katherine Kirby, Julia A. Beatty, Vanessa R. Barrs, Sonia Cattley, Victor David, Stephen J. O'Brien, Marilyn Menotti-Raymond, Katherine Belov
Stephen O'Brien

Contrasting Origin of B Chromosomes in Two Cervids (Siberian Roe Deer and Grey Brocket Deer) Unravelled by Chromosome-Specific DNA Sequencing, Alexey I. Makunin, Ilya G. Kichigin, Denis M. Larkin, Patricia C. M. O'Brien, Malcolm A. Ferguson-Smith, Fengtang Yang, Anastasiya A. Proskuryakova, Nadezhda V. Vorobieva, Ekaterina N. Chernyaeva, Stephen J. O'Brien, Alexander S. Graphodatsky, Vladimir Trifonov
Stephen O'Brien

The Asian Arowana (Scleropages formosus) Genome Provides New Insights into the Evolution of an Early Lineage of Teleosts, Chao Bian, Yinchang Hu, Vydianathan Ravi, Inna S. Kuznetsova, Xueyan Shen, Xidong Mu, Ying Sun, Xinxin You, Jia Li, Xiaofeng Li, Ying Qiu, Boon-Hui Tay, Natascha May Thevasagayam, Aleksey S. Komissarov, Vladimir Trifonov, Marsel Kabilov, Alexey Tupikin, Jianren Luo, Yi Liu, Hongmei Song, Chao Liu, Xuejie Wang, Dangen Gu, Yexin Yang, Wujiao Li, Gianluca Polgar, Guangyi Fan, Peng Zeng, He Zhang, Zijun Xiong, Zhujing Tang, Chao Peng, Zhiqiang Ruan, Hui Yu, Jieming Chen, Mingjun Fan, Yu Huang, Min Wang, Xiaomeng Zhao, Guojun Hu, Huanming Yang, Jian Wang, Jun Wang, Xun Xu, Linsheng Song, Gangchun Xu, Junmin Xu, Stephen J. O'Brien, Laszlo Orban, Byrappa Venkatesh, Qiong Shi
Stephen O'Brien

Perspectives Provided by Leopard and Other Cat Genomes: How Diet Determined the Evolutionary History of Carnivores, Omnivores, and Herbivores, Soonok Kim, Yun Sung Cho, Jong Bhak, Stephen J. O'Brien, Joo-Hong Yeo
Stephen O'Brien

Positive Selection Linked with Generation of Novel Mammalian Dentition Patterns, Joao P. Machado, Siby Philip, Emanuel Maldonado, Stephen J. O'Brien, Warren E. Johnson
Stephen O'Brien

Signal Localization: A New Approach in Signal Discovery, Sergey Malov, Alexey Antonik, Minzhong Tang, Alexandre Berred, Yi Zeng, Stephen J. O'Brien
Stephen O'Brien

Mitogenomic Sequences Support a North–South Subspecies Subdivision within Solenodon paradoxus, Adam L. Brandt, Kirill Grigorev, Yashira M. Afanador-Hernandez, Liz A. Paulino, William J. Murphy, Adrell Nunez, Aleksey Komissarov, Jessica R. Brandt, Pavel Dobrynin, J. David Hernandez-Martich, Roberta Maria, Stephen J. O'Brien, Luis Rodriguez, Juan C. Martinez-Cruzado, T. K. Oleksyk, Alfred L. Roca
Stephen O'Brien

Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds, Daniela Almeida, Emanuel Maldonado, Imran Khan, Liliana Silva, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes
Stephen O'Brien

Conservation Genetics of the Cheetah: Lessons Learned and New Opportunities, Stephen J. O'Brien, Warren E. Johnson, Carlos A. Driscoll, Pavel Dobrynin, Laurie Marker
Biology Faculty Articles

Genome-Wide Association Study of MKI67 Expression and its Clinical Implications in HBV-Related Hepatocellular Carcinoma in Southern China, Cheng Kun Yang, Ting Dong Yu, Chuang Ye Han, Wei Qin, Xi Wen Liao, Long Yu, Xiao Guang Liu, Guang Zhi Zhu, Hao Su, Si Cong Lu, Zhi Wei Chen, Zhen Liu, Ke Tuan Huang, Zheng Tao Liu, Yu Liang, Jian Lu Huang, Zeng Nan Mo, Xue Qin, Lequn Li, Kai Yin Xiao, Min Hao Peng, Cheryl Ann Winkle, Stephen J. O'Brien, Tao Peng
Biology Faculty Articles

Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa, Wen Xie, Denis Agniel, Andrey Shevchenko, Sergey V. Malov, Anton Svitin, Nikolay Cherkasov, Marianna K. Baum, Adriana Campa, Simani Gaseitsiwe, Hermann Bussmann, Joseph Makhema, Richard Marlink, Vladimir Novitsky, Tun Hou Lee, Tianxi Cai, Stephen J. O'Brien, M. Essex
Biology Faculty Articles

Preoperative transcatheter arterial chemotherapy may suppress oxidative stress in hepatocellular carcinoma cells and reduce the risk of short-term relapse, Hao Su, Guangzhi Zhu, Ketut Indra Djaja P, Yi Lin, Yizhen Gong, Xiaoguang Liu, Jiaquan Li, Zhiming Liu, Xiao Qin, Lequn Li, Tangwei Liu, Zili Lu, Minyi Wei, Lunan Yan, Cheryl Ann Winkler, Stephen J. O'Brien, Jing Li, Kaiyin Xiao, Tao Peng
Biology Faculty Articles

Genome-wide signatures of complex introgression and adaptive evolution in the big cats, Henrique V. Figueiró, Gang Li, Fernanda J. Trindade, Juliana Assis, Fabiano Pais, Gabriel Fernandes, Sarah H.D. Santos, Graham M. Hughes, Aleksey Komissarov, Agostinho Antunes, Cristine S. Trinca, Maíra R. Rodrigues, Tyler Linderoth, Ke Bi, Leandro Silveira, Fernando C.C. Azevedo, Daniel Kantek, Emiliano Ramalho, Ricardo A. Brassaloti, Priscilla M.S. Villela, Adauto L.V. Nunes, Rodrigo H.F. Teixeira, Ronaldo G. Morato, Damian Loska, Patricia Saragüeta, Toni Gabaldón, Emma C. Teeling, Stephen J. O'Brien, Rasmus Nielsen
Biology Faculty Articles

Mitogenomic Sequences Support a North–South Subspecies Subdivision within Solenodon paradoxus, Adam L. Brandt, Kirill Grigorev, Yashira M. Afanador-Hernandez, Liz A. Paulino, William J. Murphy, Adrell Nunez, Aleksey Komissarov, Jessica R. Brandt, Pavel Dobrynin, J. David Hernandez-Martich, Roberta Maria, Stephen J. O'Brien, Luis Rodriguez, Juan C. Martinez-Cruzado, T. K. Oleksyk, Alfred L. Roca
Biology Faculty Articles

Perspectives Provided by Leopard and Other Cat Genomes: How Diet Determined the Evolutionary History of Carnivores, Omnivores, and Herbivores, Soonok Kim, Yun Sung Cho, Jong Bhak, Stephen J. O'Brien, Joo-Hong Yeo
Biology Faculty Articles

Signal Localization: A New Approach in Signal Discovery, Sergey Malov, Alexey Antonik, Minzhong Tang, Alexandre Berred, Yi Zeng, Stephen J. O'Brien
Biology Faculty Articles

Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds, Daniela Almeida, Emanuel Maldonado, Imran Khan, Liliana Silva, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes
Biology Faculty Articles

A Comparative Gene Map of the Horse (Equus caballus), Alexandre R. Caetano, Yow-Ling Shiue, Leslie A. Lyons, Stephen J. O'Brien, Thomas F. Laughlin, Ann T. Bowling, James D. Murray
Stephen O'Brien

A Lion Lentivirus Related to Feline Immunodeficiency Virus: Epidemiologic and Phylogenetic Aspects, Eric W. Brown, Naoya Yuhki, Craig Packer, Stephen J. O'Brien
Stephen O'Brien

A Genome-To-Genome Analysis of Associations between Human Genetic Variation, HIV-1 Sequence Diversity, and Viral Control, Istvan Bartha, Jonathan M. Carlson, Chanson J. Brumme, Paul J. McLaren, Zabrina L. Brumme, Mina John, David W. Haas, Javier Martinez-Picado, Judith Dalmau, Cecilio Lopez-Galindez, Concepcion Casado, Andri Rauch, Huldrych F. Gunthard, Enos Bernasconi, Pietro Vernazza, Thomas Klimkait, Sabine Yerly, Stephen J. O'Brien, Jennifer Listgarten, Nico Pfeifer, Christoph Lippert, Nicolo Fusi, Zoltan Kutalik, Todd M. Allen, Viktor Muller, P. Richard Harrigan, David Heckerman, Amalio Telenti, Jacques Fellay
Stephen O'Brien

A Molecular Phylogeny of Living Primates, Polina L. Perelman, Warren E. Johnson, Christian Roos, Hector Seuanez, Julie E. Horvath, Miguel A. M. Moreira, Bailey Kessing, J. U. Pontius, Melody E. Roelke, Yves Rumpler, Maria P. C. Schneider, Artur Silva, Stephen J. O'Brien, Jill Pecon-Slattery
Stephen O'Brien

A New Moderately Repetitive DNA Sequence Family of Novel Organization, Neal D. Epstein, S. Karlsson, Stephen J. O'Brien, William S. Modi, A. Moulton, Arthur W. Nienhuis
Stephen O'Brien

A Novel Form of Human Polymorphism Involving the hDHFR-ψ1 Pseudogene Identifies Three RFLPs, Nicholas P. Anagnou, S. E. Antonarakis, Stephen J. O'Brien, Arthur W. Nienhuis
Stephen O'Brien

A Postulate for Tiger Recovery: The Case of the Caspian Tiger, Carlos A. Driscoll, I. Chestin, H. Jungius, O. Pereladova, Y. darman, E, Dinerstein, J. Seidensticker, J. Sanderson, S. Christie, Shu-Jin Luo, S. Shrestha, Y. Zhuravlev, Olga Uphyrkina, Y. V. Jhala, S. P. Yadav, D. G. Pikunov, Nobuyuki Yamaguchi, David E. Wildt, J. L. D. Smith, L. Marker, P. J. Nyhus, R. Tilson, David W. Macdonald, Stephen J. O'Brien
Stephen O'Brien

A Population-Based Study to Investigate Host Genetic Factors Associated with Hepatitis B Infection and Pathogenesis in the Chinese Population, Zheng Zheng, Li Guan, Ping An, Shan Sun, Stephen J. O'Brien, Cheryl Winkler
Stephen O'Brien

A Radiation Hybrid Map of the Cat Genome: Implications for Comparative Mapping, William J. Murphy, Shan Sun, Zhang-Qun Chen, Naoya Yuhki, Deborah Hirschmann, Marilyn Menotti-Raymond, Stephen J. O'Brien
Stephen O'Brien

Accounting for Multiple Comparisons in a Genome-Wide Association Study (GWAS), Randall C. Johnson, George W. Nelson, Jennifer L. Troyer, J. A. Lautenberger, Bailey Kessing, Cheryl Winkler, Stephen J. O'Brien
Stephen O'Brien

APOBEC3G Genetic Variants and Their Influence on the Progression to AIDS, Ping An, Gabriela Bleiber, Priya Duggal, George Nelson, Margaret May, Bastien Mangeat, Irene Alobwede, Didier Trono, David Vlahov, Sharyne Donfield, James J. Goedert, John Phair, Susan Buchbinder, Stephen J. O'Brien, Amalio Telenti, Cheryl Winkler
Stephen O'Brien

Amplification and Chromosomal Dispersion of Human Endogenous Retroviral Sequences, Paul E. Steele, Malcolm A. Martin, Arnold B. Rabson, Theodore Bryan, Stephen J. O'Brien
Stephen O'Brien

Akvr-1, a Dominant Murine Leukemia Virus Restriction Gene, is Polymorphic in Leukemia-Prone Wild Mice, Murray B. Gardner, Suraiya Rasheed, BIjay K. Pal, John D. Estes, Stephen J. O'Brien
Stephen O'Brien

An Analysis of Gene-Enzyme Variability in Natural Populations of Drosophila melanogaster and D. simulans, Stephen J. O'Brien, Ross J. MacIntyre
Stephen O'Brien

Adaptive Evolution of the Matrix Extracellular Phosphoglycoprotein in Mammals, Joao P. Machado, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Stephen O'Brien

An ∼140-kb Deletion Associated with Feline Spinal Muscular Atrophy Implies an Essential LIX1 Function for Motor Neuron Survival, John C. Fyfe, Marilyn Menotti-Raymond, Victor A. David, Lars Brichta, Alejandro A. Schaffer, R. Agarwala, William J. Murphy, William J. Wedemeyer, Brittany L. Gregory, Bethany G. Buzzell, Meghan C. Drummond, Brunhilde Wirth, Stephen J. O'Brien
Stephen O'Brien

Annotated Features of Domestic Cat – Felis catus Genome, Gaik Tamazian, Serguei Simonov, Pavel Dobrynin, Alexey Makunin, Anton Logachev, Aleksey Komissarov, Andrey Shevchenko, Vladimir Brukhin, Nikolay Cherkasov, Anton Svitin, Klaus-Peter Koepfli, Joan Pontius, Carlos A. Driscoll, Kevin Blackistone, Cristina Barr, David Goldman, Agostinho Antunes, Javier Quilez, Belen Lorente-Galdos, Can Alkan, Tomas Marques-Bonet, Marilyn Menotti-Raymond, Victor A. David, Kristina Narfstrom, Stephen J. O'Brien
Stephen O'Brien

Analysis of Multiple Isoenzyme Expression Among Twenty-Two Species of Mycoplasma and Acholeplasma, Stephen J. O'Brien, Janice M. Simonson, Marion W. Grabowski, Michael F. Barile
Stephen O'Brien

Association of DC-SIGN Promoter Polymorphism with Increased Risk for Parenteral, but Not Mucosal, Acquisition of Human Immunodeficiency Virus Type 1 Infection, Maureen P. Martin, Michael M. Lederman, Holli B. Hutcheson, James J. Goedert, George W. Nelson, Yvette van Kooyk, Roger Detels, Susan Buchbinder, Keith Hoots, David Vlahov, Stephen J. O'Brien, Mary Carrington
Stephen O'Brien

Bone-Associated Gene Evolution and the Origin of Flight in Birds, Joao P. Machado, Warren E. Johnson, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O'Brien, Agostinho Antunes
Stephen O'Brien

Bvr-1, a Restriction Locus of a Type C RNA Virus in the Feline Cellular Genome: Identification, Location, and Phenotypic Characterization in Cat X Mouse Somatic Cell Hybrids, Stephen J. O'Brien
Stephen O'Brien

Bvr-1, a Restriction Locus of a Type C RNA Virus in the Feline Cellular Genome: Pleiotropic Restriction of Endogenous BALB Virus in Cat x Mouse Somatic Cell Hybrids, Stephen J. O'Brien, Janice M. Simonson
Stephen O'Brien

Canine and Feline Parvoviruses Can Use Human or Feline Transferrin Receptors to Bind, Enter, and Infect Cells, John S. L. Parker, William J. Murphy, Dai Wang, Stephen J. O'Brien, Colin R. Parrish
Stephen O'Brien

Chromosomal Localization of Nucleic Acid-Binding Proteins by Affinity Mapping: Assignment of the IRE-Binding Protein Gene to Human Chromosome 9, Matthias W. Hentze, Hector Seuanez, Stephen J. O'Brien, Joe B. Harford, Richard D. Klausner
Stephen O'Brien

Common Genetic Variation and the Control of HIV-1 in Humans, Jacques Fellay, Dongliang Ge, Kevin V. Shianna, Sara Colombo, Bruno Ledergerber, Elizabeth T. Cirulli, Thomas J. Urban, Kunlin Zhang, Curtis Gumbs, Jason P. Smith, Antonella Castagna, Alessandro Cozzi-Lepri, Andrea de Luca, Philippa Easterbrook, Huldrych F. Gunthard, Simon Mallal, Cristina Mussini, Judith Dalmau, Javier Martinez-Picado, Jose M. Miro, Niels Obel, Steven M. Wolinsky, Jeremy J. Martinson, Roger Detels, Joseph Margolick, Lisa Jacobson, Patrick Descombes, Stylianos E. Antonarakis, Jacques S. Beckmann, Stephen J. O'Brien, Norman L. Letvin, Andrew J. McMichael, Barton F. Haynes, Mary Carrington, Sheng Feng, Amalio Telenti, David B. Goldstein
Stephen O'Brien

Clouded Leopard Phylogeny Revisited: Support for Species Recognition and Population Division Between Borneo and Sumatra, Andreas Wilting, Valerie A. Buckley-Beason, Heike Feldhaar, Jurgen Gadau, Stephen J. O'Brien, K. Eduard Linsenmair
Stephen O'Brien

Comparative Genome Organization of Human, Murine, and Feline MHC Class II Region, Naoya Yuhki, Thomas W. Beck, Robert M. Stephens, Yoko Nishigaki, Kymberly Newmann, Stephen J. O'Brien
Stephen O'Brien

Comprehensive Analysis of Class I and Class II HLA Antigens and Chronic Hepatitis B Virus Infection, Chloe L. Thio, David L. Thomas, Peter Karacki, Xiaojiang Gao, Darlene Marti, Richard A. Kaslow, James J. Goedert, Margaret Hilgartner, Steffanie A. Strathdee, Priya Duggal, Stephen J. O'Brien, Jacquie Astemborski, Mary Carrington
Stephen O'Brien

Conserved Regions of Homologous G-Banded Chromosomes Between Orders in Mammalian Evolution: Carnivores and Primates, William G. Nash, Stephen J. O'Brien
Stephen O'Brien

Consistent Effects of TSG101 Genetic Variability on Multiple Outcomes of Exposure to Human Immunodeficiency Virus Type 1, Arman A. Bashirova, Gabriela Bleiber, Ying Qi, Holli Hutcheson, Traci Yamashita, Randall C. Johnson, Jie Cheng, Galit Alter, James J. Goedert, Susan Buchbinder, Keith Hoots, David Vlahov, Margaret May, Frank Maldarelli, Lisa Jacobson, Stephen J. O'Brien, Amalio Telenti, Mary Carrington
Stephen O'Brien

DNA Recombination and Natural Selection Pressure Sustain Genetic Sequence Diversity of the Feline MHC Class I Genes, Naoya Yuhki, Stephen J. O'Brien
Stephen O'Brien

Effect of a Single Amino Acid Change in MHC Class I Molecules on the Rate of Progression to AIDS, Xiaojiang Gao, George W. Nelson, Peter Karacki, Maureen P. Martin, John Phair, Richard A. Kaslow, James J. Goedert, Susan Buchbinder, Keith Hoots, David Vlahov, Stephen J. O'Brien, Mary Carrington
Stephen O'Brien

Emerging Viruses in the Felidae: Shifting Paradigms, Stephen J. O'Brien, Jennifer L. Troyer, Meredith Brown, Warren E. Johnson, Agostinho Antunes, Melody E. Roelke, Jill Pecon-Slattery
Stephen O'Brien

Endogenous Retrovirus Insertion in the KIT Oncogene Determines White and White spotting in Domestic Cats, Victor A. David, Marilyn Menotti-Raymond, Andrea Coots Wallace, Melody E. Roelke, James Kehler, Robert Leighty, Eduardo Eizirik, Steven S. Hannah, George Nelson, Alejandro A. Schaffer, Catherine J. Connelly, Stephen J. O'Brien, David K. Ryugo
Stephen O'Brien

Evaluation and Integration of Genetic Signature for Prediction Risk of Nasopharyngeal Carcinoma in Southern China, Xiuchan Guo, Cheryl Winkler, Ji Li, Li Guan, Minzhong Tang, Jian Liao, Hong Deng, Guy de The, Yi Zeng, Stephen J. O'Brien
Stephen O'Brien

Evidence of Natural Bluetongue Virus Infection among African Carnivores, Kathleen A. Alexander, N. James MacLachlan, Pieter W. Kat, Carol House, Stephen J. O'Brien, Nicholas W. Lerche, Mary Sawyer, Laurence G. Frank, Kay Holekamp, Laura Smale, J. Weldon McNutt, M. Karen Laurenson, M. G. L. Mills, Bennie I. Osburn
Stephen O'Brien

Evidence for the Horizontal Acquisition of Murine AKR Virogenes by Recent Horizontal Infection of the Germ Line, Stephen J. O'Brien, Janet L. Moore, Malcolm A. Martin, James E. Womack
Stephen O'Brien

Every Genome Sequence Needs a Good Map, Harris A. Lewin, Denis M. Larkin, J. U. Pontius, Stephen J. O'Brien
Stephen O'Brien

Evolution of a Major Drug Metabolizing Enzyme Defect in the Domestic Cat and Other Felidae: Phylogenetic Timing and the Role of Hypercarnivory, Binu Shrestha, J. Michael Reed, Philip T. Starks, Gretchen E. Kaufman, Jared V. Goldstone, Melody E. Roelke, Stephen J. O'Brien, Klaus-Peter Koepfli, Laurence Frank, Michael H. Court
Stephen O'Brien

Evolutionary Genomics and Adaptive Evolution of the Hedgehog Gene Family (Shh, Ihh and Dhh) in Vertebrates, Joana Pereira, Warren E. Johnson, Stephen J. O'Brien, Erich D. Jarvis, Guojie Zhang, M. Thomas P. Gilbert, Vitor Vasconcelos, Agostinho Antunes
Stephen O'Brien

Extensive Conservation of Sex Chromosome Organization Between Cat and Human Revealed by Parallel Radiation Hybrid Mapping, William J. Murphy, Shan Sun, Zhang-Qun Chen, Jill Pecon-Slattery, Stephen J. O'Brien
Stephen O'Brien

Functions, Structure, and Read-Through Alternative Splicing of Feline APOBEC3 Genes, Carsten Munk, Thomas W. Beck, Jorg Zielonka, Agnes Hotz-Wagenblatt, Sarah Chareza, Marion Battenberg, Jens Thielebein, Klaus Cichutek, Ignacio G. Bravo, Stephen J. O'Brien, Martin Lochelt, Naoya Yuhki
Stephen O'Brien

Gene Discovery and Data Sharing in Genome Wide Association Analyses: Lessons Form AIDS Genetic Restriction Genes, Stephen J. O'Brien, Anton Svitin, Sergey Malov, Nikolay Cherkasov, Pavel Dobrynin, Paul Geerts, Jennifer L. Troyer, Sher L. Hendrickson, Efe Sezgin, Holli Hutcheson
Stephen O'Brien

GWATCH: A Web Platform for Automated Gene Association Discovery Analysis, Anton Svitin, Sergey Malov, Nikolay Cherkasov, Paul Geerts, Mikhail Rotkevich, Pavel Dobrynin, Andrey Shevchenko, Li Guan, Jennifer L. Troyer, Sher L. Hendrickson, Holli Hutcheson Dilks, T. K. Oleksyk, Sharyne Donfield, Edward Gomperts, Douglas A. Jabs, Efe Sezgin, Mark Van Natta, P. Richard Harrigan, Zabrina L. Brumme, Stephen J. O'Brien
Stephen O'Brien

Gene Loss, Adaptive Evolution and the Co-Evolution of Plumage Coloration Genes with Opsins in Birds, Rui Borges, Imran Khan, Warren E. Johnson, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O'Brien, Agostinho Antunes
Stephen O'Brien

Genetic Factors Leading to Chronic Epstein–Barr Virus Infection and Nasopharyngeal Carcinoma in South East China: Study Design, Methods and Feasibility, Xiu Chan Guo, Kevin Scott, Yan Liu, Michael Dean, Victor David, George W. Nelson, Randall C. Johnson, Holli H. Dilks, J. A. Lautenberger, Bailey Kessing, Janice S. Martenson, Li Guan, Shan Sun, Hong Deng, Yuming Zheng, Guy de The, Jian Liao, Yi Zeng, Stephen J. O'Brien, Cheryl Winkler
Stephen O'Brien

Genetic Characterization of Feline Leukemia Virus from Florida Panthers, Meredith Brown, Mark W. Cunningham, Alfred L. Roca, Jennifer L. Troyer, Warren E. Johnson, Stephen J. O'Brien
Stephen O'Brien

Genetic Characterization of Human c-rel Sequences, Elise Brownell, Stephen J. O'Brien, William Nash, Nancy Rice
Stephen O'Brien

Genetic Mapping of Endogenous RD-114 Retroviral Sequences of Domestic Cats, Roger H. Reeves, William G. Nash, Stephen J. O'Brien
Stephen O'Brien

Genetic Polymorphisms of CYP2E1, GSTP1, NQO1 and MPO and the Risk of Nasopharyngeal Carcinoma in a Han Chinese Population of Southern China, Xiuchan Guo, Yi Zeng, Hong Deng, Jian Liao, Yuming Zheng, Ji Li, Bailey Kessing, Stephen J. O'Brien
Stephen O'Brien

Genetic Protection against Hepatitis B Virus Conferred by CCR5Δ32: Evidence that CCR5 Contributes to Viral Persistence, Chloe L. Thio, Jacquie Astemborski, Arman A. Bashirova, Timothy L. Mosbruger, Spencer Greer, Mallory D. Witt, James J. Goedert, Margaret Hilgartner, Audrey Majesk, Stephen J. O'Brien, David L. Thomas, Mary Carrington
Stephen O'Brien

Genetic Variations Affecting Serum Carcinoembryonic Antigen Levels and Status of Regional Lymph Nodes in Patients with Sporadic Colorectal Cancer from Southern China, Yu Liang, Weizhong Tang, Tiquiang Huang, Yong Gao, Aihua Tan, Xiaobo Yang, Haiying Zhang, Yanling Hu, Xue Qin, Shan Li, Shijun Zhang, Linjian Mo, Zhenjia Liang, Deyi Shi, Zhang Huang, Yingyong Guan, Jicheng Zhou, Cheryl Winkler, Stephen J. O'Brien, Jianfeng Xu, Zengnan Mo, Tao Peng
Stephen O'Brien

Genetic Variants in Nuclear-Encoded Mitochondrial Genes Influence AIDS Progression, Sher L. Hendrickson, J. A. Lautenberger, Leslie Wei Chinn, Michael Malasky, Lawrence Kingsley, James J. Goedert, Gregory D. Kirk, Edward Gomperts, Susan Buchbinder, Jennifer L. Troyer, Stephen J. O'Brien
Stephen O'Brien

Genetics and Pathogenesis of Feline Infectious Peritonitis Virus, Meredith Brown, Jennifer L. Troyer, Jill Pecon-Slattery, M. Roelke-Parker, Stephen J. O'Brien
Stephen O'Brien

Genetic and Phylogenetic Divergence of Feline Immunodeficiency Virus in the Puma (Puma concolor), Margaret A. Carpenter, Eric W. Brown, Melanie Culver, Warren E. Johnson, Jill Pecon-Slattery, Dulce Brousset, Stephen J. O'Brien
Stephen O'Brien

Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND), Sudha K. Iyengar, John R. Sedor, Barry I. Freedman, W. H. Linda Kao, Matthias Kretzler, Benjamin J. Keller, Hanna E. Abboud, Sharon G. Adler, Lyle G. Best, Donald W. Bowden, Allison Burlock, Yii-Der Ida Chen, Shelley A. Cole, Mary E. Comeau, Jeffrey M. Curtis, Jasmin DIvers, Christiane Drechsler, Ravi Duggirala, Robert C. Elston, Xiuqing Guo, Huateng Huang, Michael M. Hoffmann, Barbara V. Howard, Eli Ipp, Paul L. Kimmel, Michael J. Klag, William C. Knowler, Orly F. Kohn, Tennille S. Leak, David J. Leehey, Man Li, Alka Malhotra, Winfried Marz, Viji Nair, Robert G. Nelson, Susanne B. Nicholas, Stephen J. O'Brien, Madeleine V. Pahl, Rulan S. Parekh, Marcus G. Pezzolesi, Rebekah S. Rasooly, Charles N. Rotimi, Jerome I. Rotter, Jeffrey R. Schelling, Michael F. Seldin, Vallabh O. Shah, Adam M. Smiles, Michael W. Smith, Kent D. Taylor, Farook Thameem, Denyse P. Thornley-Brown, Barbara J. Truitt, Christoph Wanner, E. Jennifer Weil, Cheryl Winkler, Philip G. Zager, Robert P. Igo Jr., Robert L. Hanson, Carl D. Langefeld
Stephen O'Brien

Genome Empowerment for the Puerto Rican Parrot – Amazona vittata, Stephen J. O'Brien
Stephen O'Brien

Genome-Wide Characterization of Centromeric Satellites from Multiple Mammalian Genomes, Can Alkan, Maria Francesca Cardone, Claudia Rita Catacchio, Francesca Antonacci, Stephen J. O'Brien, Oliver A. Ryder, Stefania Purgato, Monica Zoli, Evan E. Eichler, Mario Ventura
Stephen O'Brien

Genome-Wide and Differential Proteomic Analysis of Hepatitis B Virus and Aflatoxin B1 Related Hepatocellular Carcinoma in Guangxi, China, Lu-Nan Qi, Le-Qun Qi, Yuan-Yuan Chen, Zhao-Hong Chen, Tao Bai, Bang-De Xiang, Xiao Qin, Kai-Yin Xiao, Min-Hao Peng, Zhi-Ming Liu, Tang-Wei Liu, Xue Qin, Shan Li, Ze-Guang Han, Zeng-Nan Mo, Regina M. Santella, Cheryl Winkler, Stephen J. O'Brien, Tao Peng
Stephen O'Brien

Genome-Wide Mycobacterium tuberculosis Variation (GMTV) Database: A New Tool for Integrating Sequence Variations and Epidemiology, Ekaterina N. Chernyaeva, Marina V. Shulgina, Mikhail Rotkevich, Pavel Dobrynin, Serguei Simonov, Egor A. Shitikov, Dmitry S. Ischenko, Irina Y. Karpova, Elena S. Kostryukova, Elena N. Ilina, Vadim M. Govorun, Vyacheslav Y. Zhuravlev, Olga A. Manicheva, Peter K. Yablonsky, Yulia D. Isaeva, Elena Y. Nosova, Igor V. Mokrousov, Anna A. Vyazovaya, Olga V. Narvskaya, Alla L. Lapidus, Stephen J. O'Brien
Stephen O'Brien

Genomic Legacy of the African Cheetah, Acinonyx jubatus, Pavel Dobrynin, Shiping Liu, Gaik Tamazian, Zijun Xiong, Andrey A. Yurchenko, Ksenia Krasheninnikova, Sergey Kliver, A. Schmidt-Kunzel, Klaus-Peter Koepfli, Warren E. Johnson, Lukas F. K. Kuderna, Raquel Garcia-Perez, Marc de Manuel, Ricardo Godinez, Aleksey Komissarov, Alexey Makunin, Vladimir Brukhin, Weilin Qiu, Long Zhou, Fang Li, Jian Yi, Carlos A. Driscoll, Agostinho Antunes, T. K. Oleksyk, Eduardo Eizirik, Polina Perelman, Melody E. Roelke, David E. Wildt, Mark Diekhans, Tomas Marques-Bonet, Laurie Marker, Jong Bhak, Jun Wang, Guojie Zhang, Stephen J. O'Brien
Stephen O'Brien

Genomic Microsatellites as Evolutionary Chronometers: A Test in Wild Cats, Carlos A. Driscoll, Marilyn Menotti-Raymond, George Nelson, David Goldstein, Stephen J. O'Brien
Stephen O'Brien

Genomic Organization, Sequence Divergence, and Recombination of Feline Immunodeficiency Virus from Lions in the Wild, Jill Pecon-Slattery, Carrie L. McCracken, Jennifer L. Troyer, Sue VandeWoude, Melody E. Roelke, Kerry Sondgeroth, Christiaan Winterbach, Stephen J. O'Brien
Stephen O'Brien

Genomically Intact Endogenous Feline Leukemia Viruses of Recent Origin, Alfred L. Roca, Jill Pecon-Slattery, Stephen J. O'Brien
Stephen O'Brien

HLA-Cw*04 and Hepatitis C Virus Persistence, Chloe L. Thio, Xiaojiang Gao, James J. Goedert, David Vlahov, Kenrad E. Nelson, Margaret Hilgartner, Stephen J. O'Brien, Peter Karacki, Jacquie Astemborski, Mary Carrington, David L. Thomas
Stephen O'Brien

How the Leopard Hides its Spots: ASIP Mutations and Melanism in Wild Cats, Alexsandra Schneider, Victor A. David, Warren E. Johnson, Stephen J. O'Brien, Gregory S. Barsh, Marilyn Menotti-Raymond, Eduardo Eizirik
Stephen O'Brien

Host Genomic Influences on HIV/AIDS, Stephen J. O'Brien, Sher L. Hendrickson
Stephen O'Brien

Identifying Selected Regions from Heterozygosity and Divergence Using a Light-Coverage Genomic Dataset from Two Human Populations, T. K. Oleksyk, Kai Zhao, Francisco M. De La Vega, Dennis A. Gilbert, Stephen J. O'Brien, Michael W. Smith
Stephen O'Brien

Initial Sequence and Comparative Analysis of the Cat Genome, J. U. Pontius, James C. Mullikin, Douglas R. Smith, Kerstin Lindblad-Toh, Sante Gnerre, Michele Clamp, Jean Chang, R. Stephens, Beena A. Neelam, Natalia Volfovsky, Alejandro A. Schaffer, R. Agarwala, Kristina Narfstrom, William J. Murphy, Urs Giger, Alfred L. Roca, Agostinho Antunes, Marilyn Menotti-Raymond, Naoya Yuhki, Jill Pecon-Slattery, Warren E. Johnson, Guillaume Bourque, Glenn Tesler, Stephen J. O'Brien
Stephen O'Brien

Insertional Polymorphisms of Endogenous Feline Leukemia Viruses, Alfred L. Roca, William G. Nash, Joan C. Menninger, William J. Murphy, Stephen J. O'Brien
Stephen O'Brien

Influence of the CCR2-V64I Polymorphism on Human Immunodeficiency Virus Type 1 Coreceptor Activity and on Chemokine Receptor Function of CCR2b, CCR3, CCR5, and CXCR4, Benhur Lee, Benjamin J. Doranz, Shalini Rana, Yanji Yi, Mario Mellado, Jose M. R. Frade, Carlos Martinez-A., Stephen J. O'Brien, Michael Dean, Ronald G. Collman, Robert W. Doms
Stephen O'Brien

MHC Class I Molecules and Progression to AIDS, Mary Carrington, Xiaojiang Gao, Stephen J. O'Brien
Stephen O'Brien

KIR/HLA Pleiotropism: Protection against Both HIV and Opportunistic Infections, Ying Qi, Maureen P. Martin, Xiaojiang Gao, Lisa Jacobson, James J. Goedert, Susan Buchbinder, Gregory D. Kirk, Stephen J. O'Brien, John Trowsdale, Mary Carrington
Stephen O'Brien

Light Whole Genome Sequence for SNP Discovery Across Domestic Cat Breeds, James C. Mullikin, Nancy F. Hansen, Lei Shen, Heather Ebling, William F. Donahue, Wei Tao, David J. Saranga, Adrianne Brand, Marc J. Rubenfield, Alice C. Young, Pedro Cruz, Carlos Driscoll, Victor David, Samer W. K. Al-Murrani, Mary F. Locniskar, Mitchell S. Abrahamsen, Stephen J. O'Brien, Douglas R. Smith, Jeffrey A. Brockman
Stephen O'Brien

Mannose Binding Lectin Genotypes Influence Recovery from Hepatitis B Virus Infection, Chloe L. Thio, Timothy L. Mosbruger, Jacquie Astemborski, Spencer Greer, Gregory D. Kirk, Stephen J. O'Brien, David L. Thomas
Stephen O'Brien

Mitochondrial Phylogeography Illuminates the Origin of the Extinct Caspian Tiger and Its Relationship to the Amur Tiger, Carlos A. Driscoll, Nobuyuki Yamaguchi, Gila Kahila Bar-Gal, Alfred L. Roca, Shu-Jin Luo, David W. Macdonald, Stephen J. O'Brien
Stephen O'Brien

Mitochondrial Genomes Reveal an Explosive Radiation of Extinct and Extant Bears near the Miocene-Pliocene Boundary, Johannes Krause, Tina Unger, Aline Nocon, Anna-Sapfo Malaspinas, Sergios-Orestis Kolokotronis, Mathias Stiller, Leopoldo Soibelzon, Helen Spriggs, Paul H. Dear, Adrian W. Briggs, Sarah C. E. Bray, Stephen J. O'Brien, Gernot Rabeder, Paul Matheus, Alan Cooper, Montgomery Slatkin, Svante Paabo, Michael Hofreiter
Stephen O'Brien

Molecular Evolution and the Role of Oxidative Stress in the Expansion and Functional Diversification of Cytosolic Glutathione Transferases, Rute R. da Fonseca, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Stephen O'Brien

Molecular Genetic Characterization of the RD-114 Gene Family of Endogenous Feline Retroviral Sequences, Roger H. Reeves, Stephen J. O'Brien
Stephen O'Brien

Murine Retroviral Restriction Genes Fv-4 and Akvr-1 are Alleles of a Single Locus, Stephen J. O'Brien, Eric J. Berman, John D. Estes, Murray B. Gardner
Stephen O'Brien

Phylogenetic Associations of Human and Simian T-Cell Leukemia/Lymphotropic Virus Type I Strains: Evidence for Interspecies Transmission, Igor J. Koralnik, Enzo Boeri, W. Carl Saxinger, Anita Lo Monico, Jake Fullen, Antoine Gessain, Hong-Guang Guo, Robert C. Gallo, Phillip Markham, Vaniambadi Kalyanaraman, Vanessa Hirsch, Jonathan Allan, Krishna Murthy, Patricia Alford, Jill Pecon-Slattery, Stephen J. O'Brien, Genoveffa Ranchini
Stephen O'Brien

Polymorphisms of CUL5 are Associated with CD4+ T Cell Loss in HIV-1 Infected Individuals, Ping An, Priya Duggal, Li Hua Wang, Stephen J. O'Brien, Sharyne Donfield, James J. Goedert, John Phair, Susan Buchbinder, Gregory D. Kirk, Cheryl Winkler
Stephen O'Brien

Phylogeography and Genetic Ancestry of Tigers (Panthera tigris), Shu-Jin Luo, Jae-Heup Kim, Warren E. Johnson, Joelle van der Walt, Janice S. Martenson, Naoya Yuhki, Dale Miquelle, Olga Uphyrkina, John M. Goodrich, Howard Quigley, R. Tilson, Gerald Brady, Paolo Martelli, Vellayan Subramaniam, Charles McDougal, Sun Hean, Shi-Qiang Huang, Wenshi Pan, Ullas K. Karanth, Melvin Sunquist, James L. D. Smith, Stephen J. O'Brien
Stephen O'Brien

Primate TNF Promoters Reveal Markers of Phylogeny and Evolution of Innate Immunity, Andres Baena, Alan R. Mootnick, James V. Falvo, Alla V. Tsytsykova, Filipa Ligeiro, Ousmane M. Diop, Claudia Brieva, Pascal Gagneux, Stephen J. O'Brien, Oliver A. Ryder, Anne E. Goldfeld
Stephen O'Brien

Prevalence and Implications of Feline Coronavirus Infections of Captive and Free-Ranging Cheetahs (Acinonyx jubatus), J. L. Heeney, J. F. Evermann, A. J. McKeirnan, L. Marker-Kraus, M. E. Roelke, M. Bush, D. E. Wildt, D. G. Meltzer, L. Colly, J. Lukas, V. J. Manton, T. Caro, Stephen J. O'Brien
Stephen O'Brien

Prevalence of Antibodies to Feline Parvovirus, Calicivirus, Herpesvirus, Coronavirus, and Immunodeficiency Virus and of Feline Leukemia Virus Antigen and the Interrelationship of These Viral Infections in Free-Ranging Lions in East Africa, Regina Hofmann-Lehmann, Daniela Fehr, Markus Grob, Muhamed Elgizoli, Craig Packer, Janice S. Martenson, Stephen J. O'Brien, Hans Lutz
Stephen O'Brien

Regulatory Polymorphisms in the Cyclophilin A Gene, PPIA, Accelerate Progression to AIDS, Ping An, Li Hua Wang, Holli Hutcheson-Dilks, George Nelson, Sharyne Donfield, James J. Goedert, Charles Rinaldo, Susan Buchbinder, Gregory D. Kirk, Stephen J. O'Brien, Cheryl Winkler
Stephen O'Brien

Recurrent Evolution of Melanism in South American Felids, Alexsandra Schneider, Corneliu Henegar, Kenneth Day, Devin Absher, Constanza Napolitano, Leandro Silveira, Victor A. David, Stephen J. O'Brien, Marilyn Menotti-Raymond, Gregory S. Barsh, Eduardo Eizirik
Stephen O'Brien

Reconstructing the Genomic Architecture of Mammalian Ancestors Using Multispecies Comparative Maps, William J. Murphy, Guillaume Bourque, Glenn Tesler, Pavel Pevzner, Stephen J. O'Brien
Stephen O'Brien

Role of Exonic Variation in Chemokine Receptor Genes on AIDS: CCRL2 F167Y Association with Pneumocystis Pneumonia, Ping An, Rongling Li, Ji Ming Wang, Teizo Yoshimura, Munehisa Takahashi, Ram Samudralal, Stephen J. O'Brien, John Phair, James J. Goedert, Gregory D. Kirk, Jennifer L. Troyer, Efe Sezgin, Susan Buchbinder, Sharyne Donfield, George W. Nelson, Cheryl Winkler
Stephen O'Brien

Sequencing the Genome of the Domestic Cat Felis catus, Stephen J. O'Brien, Eric S. Lander, M. E. Haskins, Urs Giger, Niels C. Pederson, David E. Wildt, William J. Murphy, Naoya Yuhki, Marilyn Menotti-Raymond
Stephen O'Brien

Sequences, Annotation and Single Nucleotide Polymorphism of the Major Histocompatibility Complex in the Domestic Cat, Naoya Yuhki, James C. Mullikin, Thomas W. Beck, Robert M. Stephens, Stephen J. O'Brien
Stephen O'Brien

Significant Admixture Linkage Disequilibrium Across 30 cM Around the FY Locus in African Americans, J. A. Lautenberger, J. Claiborne Stephens, Stephen J. O'Brien, Michael W. Smith
Stephen O'Brien

Seroprevalence and Genomic Divergence of Circulating Strains of Feline Immunodeficiency Virus Among Felidae and Hyaenidae Species, Jennifer L. Troyer, Jill Pecon-Slattery, Melody E. Roelke, Warren E. Johnson, Sue VandeWoude, Nuria Vazquez-Salat, Meredith Brown, Laurence Frank, Rosie Woodroffe, Christiaan Winterbach, Hanlie Winterbach, Graham Hemson, Mitchell Bush, Kathleen A. Alexander, Eloy Revilla, Stephen J. O'Brien
Stephen O'Brien

Subspecific Status of the Korean Tiger Inferred by Ancient DNA Analysis, Mu-Yeong Lee, Jee Yun Hyun, Seo-Jin Lee, Junghwa An, Eunok Lee, Mi-Sook Min, Junpei Kimura, Shin-ichirio Kawada, Nozomi Kurihara, Shu-Jin Luo, Stephen J. O'Brien, Warren E. Johnson, Hang Lee
Stephen O'Brien

SmileFinder: A Resampling-Based Approach to Evaluate Signatures of Selection from Genome-Wide Sets of Matching Allele Frequency Data in Two or More Diploid Populations, Wilfred M. Guiblet, Kai Zhao, Stephen J. O'Brien, Steven E. Massey, Alfred L. Roca, T. K. Oleksyk
Stephen O'Brien

The Case for Selection at CCR5-Δ32, Pardis Sabeti, Emily C. Walsh, Stephen F. Schaffner, Patrick Varilly, Ben Fry, Holli Hutcheson, Mike Cullen, Tarjei S. Mikkelsen, Jessica Roy, Nick Patterson, Richard Cooper, David Reich, David Altshuler, Stephen J. O'Brien, Eric S. Lander
Stephen O'Brien

The Birds of Genome10K, Stephen J. O'Brien, David Haussler, Oliver A. Ryder
Stephen O'Brien

The Adaptive Evolution of the Mammalian Mitochondrial Genome, Rute R. da Fonseca, Warren E. Johnson, Stephen J. O'Brien, Maria J. Ramos, Agostinho Antunes
Stephen O'Brien

The Dynamic Proliferation of CanSINEs Mirrors the Complex Evolution of Feliforms, Kathryn B. Walters-Conte, Diana L. E. Johnson, Warren E. Johnson, Stephen J. O'Brien, Jill Pecon-Slattery
Stephen O'Brien

The Evolutionary Dynamics of the Lion Panthera leo Revealed by Host and Viral Population Genomics, Agostinho Antunes, Jennifer L. Troyer, Melody E. Roelke, Jill Pecon-Slattery, Craig Packer, Christiaan Winterbach, Graham Hemson, Laurence G. Frank, Philip Stander, Ludwig Siefert, Margaret Driciru, Paul J. Funston, Kathy A. Alexander, Katherine C. Prager, Gus Mills, David E. Wildt, Mitch E. Bush, Stephen J. O'Brien, Warren E. Johnson
Stephen O'Brien

Mammalian Keratin Associated Proteins (KRTAPs) Subgenomes: Disentangling Hair Diversity and Adaptation to Terrestrial and Aquatic Environments, Imran Khan, Emanuel Maldonado, Vitor Vasconcelos, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes
Stephen O'Brien

The Genome Russia Project: Closing the Largest Remaining Omission on the World Genome Map, T. K. Oleksyk, Vladimir Brukhin, Stephen J. O'Brien
Stephen O'Brien

The GLI-Kruppel Family of Human Genes, John M. Ruppert, Kenneth W. Kinzler, Albert J. Wong, Sandra H. Bigner, Fa-Ten Kao, Martha L. Law, Hector Seuanez, Stephen J. O'Brien, Bert Vogelstein
Stephen O'Brien

The First Whole Genome and Transcriptome of the Cinereous Vulture Reveals Adaptation in the Gastric and Immune Defense Systems and Possible Convergent Evolution between the Old and New World Vultures, Oksung Chung, Seondeok Jin, Yun Sung Cho, Jeongheui Lim, Hyunho Kim, Sungwoong Jho, Hak-Min Kim, JeHoon Jun, HyeJin Lee, Alvin Chon, Junsu Ko, Jeremy Edwards, Jessica A. Weber, Kyudong Han, Stephen J. O'Brien, Andrea Manica, Jong Bhak, Woon Kee Paek
Stephen O'Brien

The Linkage Disequilibrium Maps of Three Human Chromosomes Across Four Populations Reflect Their Demographic History and a Common Underlying Recombination Pattern, Francisco M. De La Vega, Hadar Isaac, Andrew Collins, Charles R. Scafe, Bjarni V. Halldorsson, Xiaoping Su, Ross A. Lippert, Yu Wang, Marion Laig-Webster, Ryan T. Koehler, Janet S. Ziegle, Lewis T. Wogan, Junko F. Stevens, Kyle M. Leinen, Sheri J. Olson, Karl J. Guegler, Xiaoqing You, Lily H. Xu, Heinz G. Hemken, Francis Kalush, Mitsuo Itakura, Yi Zheng, Guy de The, Stephen J. O'Brien, Andrew G. Clark, Sorin Istrail, Michael W. Hunkapiller, Eugene G. Spier, Dennis A. Gilbert
Stephen O'Brien

The Tiger Genome and Comparative Analysis with Lion and Snow Leopard Genomes, Yun Sung Cho, Li Hu, Haolong Hou, Hang Lee, Jiaohui Xu, Soowhan Kwon, Sukhun Oh, Hak-Min Kim, Sungwoong Jho, Sangsoo Kim, Young-Ah Shin, Byung Chul Kim, Hyunmin Kim, Chang-uk Kim, Shu-Jin Luo, Warren E. Johnson, Klaus-Peter Koepfli, A. Schmidt-Kunzel, Jason A. Turner, L. Marker, Cindy K. Harper, Susan M. Miller, Wilhelm Jacobs, Laura D. Bertola, Tae Hyung Kim, Sunghoon Lee, Qian Zhou, Hyun-Ju Jung, Xiao Xu, Priyvrat Gadhvi, Pengwei Xu, Yingqi Xiong, Yadan Luo, Shengkai Pan, Caiyun Gou, Xiuhui Chu, Jilin Zhang, Sanyang Liu, Jing He, Ying Chen, Linfeng Yang, Yulan Yang, Jiaju He, Sha Liu, Junyi Wang, Chul Hong Kim, Hwanjong Kwak, Jong-Soo Kim, Seungwoo Hwang, Junsu Ko, Chang-Bae Kim, Sangtae Kim, Damdin Bayarlkhagva, Woon Kee Paek, Seong-Jin Kim, Stephen J. O'Brien, Jun Wang, Jong Bhak
Stephen O'Brien

The Principal Genetic Determinants for Nasopharyngeal Carcinoma in China Involve the HLA Class I Antigen Recognition Groove, Minzhong Tang, J. A. Lautenberger, Xiaojiang Gao, Efe Sezgin, Sher L. Hendrickson, Jennifer L. Troyer, Victor A. David, Li Guan, Carl McIntosh, Xiuchan Guo, Yuming Zheng, Jian Liao, Hong Deng, Michael Malasky, Bailey Kessing, Cheryl Winkler, Mary Carrington, Guy de The, Yi Zeng, Stephen J. O'Brien
Stephen O'Brien

The Role of Gene Duplication and Unconstrained Selective Pressures in the Melanopsin Gene Family Evolution and Vertebrate Circadian Rhythm Regulation, Rui Borges, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Stephen O'Brien

The t(11;14)(p15;q11) in a T-Cell Acute Lymphoblastic Leukemia Cell Line Activates Multiple Transcripts, Including Ttg-1, a Gene Encoding a Potential Zinc Finger Protein, Elizabeth A. McGuire, Richard D. Hockett, Karen M. Pollock, Marty F. Bartholdi, Stephen J. O'Brien, Stanley J. Korsmeyer
Stephen O'Brien

The α-Glycerophosphate Cycle in Drosophila melanogaster IV. Metabolic, Ultrastructural, and Adaptive Consequences of αGpdh-1 "Null" Mutations, Stephen J. O'Brien, Yoshio Shimada
Stephen O'Brien

Tissue Sampling Methods and Standards for Vertebrate Genomics, Pamela B. Y. Wong, Edward O. Wiley, Warren E. Johnson, Oliver A. Ryder, Stephen J. O'Brien, David Haussler, Klaus-Peter Koepfli, Marlys L. Houck, Polina L. Perelman, Gabriela Mastromonaco, Andrew C. Bentley, Byrappa Venkatesh, Ya-ping Zhang, Robert W. Murphy
Stephen O'Brien

The α-Glycerophosphate Cycle in Drosophila melanogaster. III. Relative Viability of "Null" Mutants at the α-Glycerophosphate Dehydrogenase-1 Locus, Stephen J. O'Brien, Bruce Wallace, Ross J. MacIntyre
Stephen O'Brien

The κ-Deleting Element: Germline and Rearranged, Duplicated and Dispersed Forms, Winfried B. Graninger, Paula L. Goldman, Cynthia C. Morton, Stephen J. O'Brien, Stanley J. Korsmeyer
Stephen O'Brien

Unusual Polymorphisms in Human Immunodeficiency Virus Type 1 Associated with Nonprogressive Infection, Louis Alexander, Emma Weiskopf, Thomas C. Greenough, Nathan C. Gaddis, Marcy C. Auerbach, MIchael H. Malim, Stephen J. O'Brien, Bruce D. Walker, John L. Sullivan, Ronald C. Desrosiers
Stephen O'Brien

The Evolutionary Dynamics of the Lion Panthera leo Revealed by Host and Viral Population Genomics, Agostinho Antunes, Jennifer L. Troyer, Melody E. Roelke, Jill Pecon-Slattery, Craig Packer, Christiaan Winterbach, Graham Hemson, Laurence G. Frank, Philip Stander, Ludwig Siefert, Margaret Driciru, Paul J. Funston, Kathy A. Alexander, Katherine C. Prager, Gus Mills, David E. Wildt, Mitch E. Bush, Stephen J. O'Brien, Warren E. Johnson
Stephen O'Brien

Worldwide Prevalence of Lentivirus Infection in Wild Feline Species: Epidemiologic and Phylogenetic Aspects, Robert A. Olmstead, Raymond Langley, Melody E. Roelke, Robert M. Goeken, Diane Adger-Johnson, Julie P. Goff, John P. Albert, Craig Packer, M. Karen Laurenson, Tim M. Caro, Lue Scheepers, David E. Wildt, Mitchell Bush, Janice S. Martenson, Stephen J. O'Brien
Stephen O'Brien

The genome-wide analysis of carcinoembryonic antigen signaling by colorectal cancer cells using RNA sequencing, Olga Bajenova, Anna Gorbunova, Igor Evsyukov, Michael Rayko, Svetlana Gapon, Ekaterina Bozhokina, Alexander Shishkin, Stephen J. O'Brien
Biology Faculty Articles

Positive Selection Linked with Generation of Novel Mammalian Dentition Patterns, Joao P. Machado, Siby Philip, Emanuel Maldonado, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

De Novo Sequencing, Assembly and Analysis of Eight Different Transcriptomes from the Malayan Pangolin, Aini Mohamed Yusoff, Tze King Tan, Ranjeev Hari, Klaus-Peter Koepfli, Wei Yee Wee, Agostinho Antunes, Frankie Thomas Sitam, Jeffrine Japning Rovie-Ryan, Kayal Vizi Karuppannan, Guat Jah Wong, Leonard Lipovich, Wesley C. Warren, Stephen J. O'Brien, Siew Woh Choo
Biology Faculty Articles

Continued Decline in Genetic Diversity Among Wild Cheetahs (Acinonyx jubatus) Without Further Loss of Semen Quality, Kimberly A. Terrell, Adrienne E. Crosier, David E. Wildt, Stephen J. O'Brien, Nicola M. Anthony, Laurie Marker, Warren E. Johnson
Biology Faculty Articles

Contrasting Origin of B Chromosomes in Two Cervids (Siberian Roe Deer and Grey Brocket Deer) Unravelled by Chromosome-Specific DNA Sequencing, Alexey I. Makunin, Ilya G. Kichigin, Denis M. Larkin, Patricia C. M. O'Brien, Malcolm A. Ferguson-Smith, Fengtang Yang, Anastasiya A. Proskuryakova, Nadezhda V. Vorobieva, Ekaterina N. Chernyaeva, Stephen J. O'Brien, Alexander S. Graphodatsky, Vladimir Trifonov
Biology Faculty Articles

Chromosomer: A Reference-Based Genome Arrangement Tool for Producing Draft Chromosome Sequences, Gaik Tamazian, Pavel Dobrynin, Ksenia Krasheninnikova, Aleksey Komissarov, Klaus-Peter Koepfli, Stephen J. O'Brien
Biology Faculty Articles

The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes, Jose V. Lopez, Stephen J. O'Brien, Charles Messing, M. Christina Diaz, Nicole D. Fogarty, Matthew Johnston
Jose Lopez

A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination, Gang Li, LaDeana W. Hillier, Robert A. Grahn, Aleksey V. Zimin, Victor A. David, Marilyn Menotti-Raymond, Rondo Middleton, Steven S. Hannah, Sher L. Hendrickson, Alexey Makunin, Stephen J. O'Brien, Patrick Minx, Richard K. Wilson, Leslie A. Lyons, Wesley C. Warren, William J. Murphy
Biology Faculty Articles

Response to Comment by Faurby, Werdelin and Svenning, Stephen J. O'Brien, Klaus Peter Koepfli, Eduardo Eizirik, Warren Johnson, Carlos Driscoll, Agostinho Antunes, Anne Schmidt-Kuntzel, Laurie Marker, Pavel Dobrynin
Biology Faculty Articles

A Mutation in LTBP2 Causes Congenital Glaucoma in Domestic Cats (Felis catus), Markus H. Kuehn, Koren A. Lipsett, Marilyn Menotti-Raymond, S. Scott Whitmore, Todd E. Scheetz, Victor A. David, Stephen J. O'Brien, Zhongyuan Zhao, Jackie K. Jens, Elizabeth M. Snella, N. Matthew Ellinwood, Gillian J. McLellan
Biology Faculty Articles

Bone-Associated Gene Evolution and the Origin of Flight in Birds, Joao P. Machado, Warren E. Johnson, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O'Brien, Agostinho Antunes
Biology Faculty Articles

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding, Shubha Vij, Heiner Kuhl, Inna S. Kuznetsova, Aleksey Komissarov, Andrey A. Yurchenko, Peter Van Heusden, Siddharth Singh, Natascha May Thevasagayam, Sai Rama Sridatta Prakki, Kathiresan Purushothaman, Jolly M. Saju, Junhui Jiang, Stanley Kimbung Mbandi, Mario Jonas, Amy Hin Yan Tong, Sarah Mwangi, Doreen Lau, Si Yan Ngoh, Woei Chang Liew, Xueyan Shen, Lawrence S. Hon, James P. Drake, Matthew Boitano, Richard Hall, Chen-Shan Chin, Ramkumar Lachumanan, Jonas Korlach, Vladimir Trifonov, Marsel Kabilov, Alexey Tupikin, Darrell Green, Simon Moxon, Tyler Garvin, Fritz J. Sedlazeck, Gregory W. Vurture, Gopikrishna Gopalapillai, Vinaya Kumar Katneni, Tansyn H. Noble, Vinod Scaria, Sridhar Sivasubbu, Dean R. Jerry, Stephen J. O'Brien, Michael C. Schatz, Tamas Dalmay, Stephen W. Turner, Si Lok, Alan Christoffels, Laszlo Orban
Biology Faculty Articles

The Asian Arowana (Scleropages formosus) Genome Provides New Insights into the Evolution of an Early Lineage of Teleosts, Chao Bian, Yinchang Hu, Vydianathan Ravi, Inna S. Kuznetsova, Xueyan Shen, Xidong Mu, Ying Sun, Xinxin You, Jia Li, Xiaofeng Li, Ying Qiu, Boon-Hui Tay, Natascha May Thevasagayam, Aleksey S. Komissarov, Vladimir Trifonov, Marsel Kabilov, Alexey Tupikin, Jianren Luo, Yi Liu, Hongmei Song, Chao Liu, Xuejie Wang, Dangen Gu, Yexin Yang, Wujiao Li, Gianluca Polgar, Guangyi Fan, Peng Zeng, He Zhang, Zijun Xiong, Zhujing Tang, Chao Peng, Zhiqiang Ruan, Hui Yu, Jieming Chen, Mingjun Fan, Yu Huang, Min Wang, Xiaomeng Zhao, Guojun Hu, Huanming Yang, Jian Wang, Jun Wang, Xun Xu, Linsheng Song, Gangchun Xu, Junmin Xu, Stephen J. O'Brien, Laszlo Orban, Byrappa Venkatesh, Qiong Shi
Biology Faculty Articles

The Population Origins and Expansion of Feral Cats in Australia, Peter B.S. Spencer, Andrey A. Yurchenko, Victor A. David, Rachael Scott, Klaus Peter Koepfli, Carlos Driscoll, Stephen J. O'Brien, Marilyn Menotti-Raymond
Biology Faculty Articles

Genetic Evidence for Contrasting Wetland and Savannah Habitat Specializations in Different Populations of Lions (Panthera leo), Andy E. Moore, Fenton P. D. (Woody) Cotterill, Christiaan W. Winterbach, Hanlie E. K. Winterbach, Agostinho Antunes, Stephen J. O'Brien
Biology Faculty Articles

The Population Origins and Expansion of Feral Cats in Australia, Peter B. S. Spencer, Andrey A. Yurchenko, Victor A. David, Rachael Scott, Klaus-Peter Koepfli, Carlos Driscoll, Stephen J. O'Brien, Marilyn Menotti-Raymond
Biology Faculty Articles

Genomics in Conservation: Case Studies and Bridging the Gap between Data and Application, Brittany A. Garner, Brian K. Hand, Stephen J. Amish, Louis Bernatchez, Jeffrey T. Foster, Kristina M. Miller, Phillip A. Morin, Shawn R. Narum, Stephen J. O'Brien, William D. Templin, Paul Sunnucks, Jeffrey Strait, Kenneth I. Warheit, Todd R. Seamons, John Wenburg, Jeffrey Olsen, Gordon Luikart
Biology Faculty Articles

PGD: a pangolin genome hub for the research community, Tze King Tan, Ka Yun Tan, Ranjeev Hari, Aini Mohamed Yusoff, Guat Jah Wong, Cheuk Chuen Siow, Naresh V.R. Mutha, Mike Rayko, Aleksey Komissarov, Pavel Dobrynin, Ksenia Krasheninnikova, Gaik Tamazian, Ian C. Paterson, Wesley C. Warren, Warren E. Johnson, Stephen J. O'Brien, Siew Woh Choo
Biology Faculty Articles

Genomic Legacy of the African Cheetah, Acinonyx jubatus, Pavel Dobrynin, Shiping Liu, Gaik Tamazian, Zijun Xiong, Andrey A. Yurchenko, Ksenia Krasheninnikova, Sergey Kliver, A. Schmidt-Kunzel, Klaus-Peter Koepfli, Warren E. Johnson, Lukas F. K. Kuderna, Raquel Garcia-Perez, Marc de Manuel, Ricardo Godinez, Aleksey Komissarov, Alexey Makunin, Vladimir Brukhin, Weilin Qiu, Long Zhou, Fang Li, Jian Yi, Carlos A. Driscoll, Agostinho Antunes, T. K. Oleksyk, Eduardo Eizirik, Polina Perelman, Melody E. Roelke, David E. Wildt, Mark Diekhans, Tomas Marques-Bonet, Laurie Marker, Jong Bhak, Jun Wang, Guojie Zhang, Stephen J. O'Brien
Biology Faculty Articles

Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida, Imran Khan, Zhikai Yang, Emanuel Maldonado, Cai Li, Guojie Zhang, M. Thomas P. Gilbert, Erich D. Jarvis, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes
Biology Faculty Articles

Effect of Carcinoembryonic Antigen Production by Colorectal Cancer Cells on Tumor Microenvironment and Cancer Progression, Olga Bajenova, I. Evsyukov, Stephen J. O'Brien
Biology Faculty Articles

Putting Russia on the Genome Map, T. K. Oleksyk, Vladimir Brukhin, Stephen J. O'Brien
Biology Faculty Articles

The Genome Russia Project: Closing the Largest Remaining Omission on the World Genome Map, T. K. Oleksyk, Vladimir Brukhin, Stephen J. O'Brien
Biology Faculty Articles

Gene Loss, Adaptive Evolution and the Co-Evolution of Plumage Coloration Genes with Opsins in Birds, Rui Borges, Imran Khan, Warren E. Johnson, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O'Brien, Agostinho Antunes
Biology Faculty Articles

The First Whole Genome and Transcriptome of the Cinereous Vulture Reveals Adaptation in the Gastric and Immune Defense Systems and Possible Convergent Evolution between the Old and New World Vultures, Oksung Chung, Seondeok Jin, Yun Sung Cho, Jeongheui Lim, Hyunho Kim, Sungwoong Jho, Hak-Min Kim, JeHoon Jun, HyeJin Lee, Alvin Chon, Junsu Ko, Jeremy Edwards, Jessica A. Weber, Kyudong Han, Stephen J. O'Brien, Andrea Manica, Jong Bhak, Woon Kee Paek
Biology Faculty Articles

Cookiecutter: A Tool for Kmer-Based Read Filtering and Extraction, Ekaterina Starostina, Gaik Tamazian, Pavel Dobrynin, Stephen J. O'Brien, Aleksey Komissarov
Biology Faculty Articles

Genome-Wide Evidence Reveals that African and Eurasian Golden Jackals are Distinct Species, Klaus-Peter Koepfli, John Pollinger, Raquel Godinho, Jacqueline Robinson, Amanda Lea, Sarah Hendricks, Rena M. Schweizer, Olaf Thalmann, Pedro Salva, Zhenxin Fan, Andrey A. Yurchenko, Pavel Dobrynin, Alexey Makunin, James A. Cahill, Beth Shapiro, Francisco Alvares, Jose C. Brito, Eli Geffen, Jennifer A. Leonard, Kristofer M. Helgen, Warren E. Johnson, Stephen J. O'Brien, Blaire Van Valkenburgh, Robert K. Wayne
Biology Faculty Articles

Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND), Sudha K. Iyengar, John R. Sedor, Barry I. Freedman, W. H. Linda Kao, Matthias Kretzler, Benjamin J. Keller, Hanna E. Abboud, Sharon G. Adler, Lyle G. Best, Donald W. Bowden, Allison Burlock, Yii-Der Ida Chen, Shelley A. Cole, Mary E. Comeau, Jeffrey M. Curtis, Jasmin DIvers, Christiane Drechsler, Ravi Duggirala, Robert C. Elston, Xiuqing Guo, Huateng Huang, Michael M. Hoffmann, Barbara V. Howard, Eli Ipp, Paul L. Kimmel, Michael J. Klag, William C. Knowler, Orly F. Kohn, Tennille S. Leak, David J. Leehey, Man Li, Alka Malhotra, Winfried Marz, Viji Nair, Robert G. Nelson, Susanne B. Nicholas, Stephen J. O'Brien, Madeleine V. Pahl, Rulan S. Parekh, Marcus G. Pezzolesi, Rebekah S. Rasooly, Charles N. Rotimi, Jerome I. Rotter, Jeffrey R. Schelling, Michael F. Seldin, Vallabh O. Shah, Adam M. Smiles, Michael W. Smith, Kent D. Taylor, Farook Thameem, Denyse P. Thornley-Brown, Barbara J. Truitt, Christoph Wanner, E. Jennifer Weil, Cheryl Winkler, Philip G. Zager, Robert P. Igo Jr., Robert L. Hanson, Carl D. Langefeld, Family Investigation of Nephropathy and Diabetes (FIND) Research Group
Biology Faculty Articles

Genetic Ancestry of the Extinct Javan and Bali Tigers, Hao-Ran Xue, Nobuyuki Yamaguchi, Carlos A. Driscoll, Yu Han, Gila Kahila Bar-Gal, Yan Zhuang, Ji H. Mazak, David W. Macdonald, Stephen J. O'Brien, Shu-Jin Luo
Biology Faculty Articles

The Genome 10K Project: A Way Forward, Klaus-Peter Koepfli, Benedict Paten, The Genome 10K Community of Scientists, Stephen J. O'Brien
Biology Faculty Articles

Recurrent Evolution of Melanism in South American Felids, Alexsandra Schneider, Corneliu Henegar, Kenneth Day, Devin Absher, Constanza Napolitano, Leandro Silveira, Victor A. David, Stephen J. O'Brien, Marilyn Menotti-Raymond, Gregory S. Barsh, Eduardo Eizirik
Biology Faculty Articles

SmileFinder: A Resampling-Based Approach to Evaluate Signatures of Selection from Genome-Wide Sets of Matching Allele Frequency Data in Two or More Diploid Populations, Wilfred M. Guiblet, Kai Zhao, Stephen J. O'Brien, Steven E. Massey, Alfred L. Roca, T. K. Oleksyk
Biology Faculty Articles

The Birds of Genome10K, Stephen J. O'Brien, David Haussler, Oliver A. Ryder
Biology Faculty Articles

Whole-Genome Analyses Resolve Early Branches in the Tree of Life of Modern Birds, Erich D. Jarvis, Siavash Mirarab, Andre J. Aberer, Bo Li, Peter Houde, Cai Li, Simon Y. W. Ho, Brant C. Faircloth, Benoit Nabholz, Jason T. Howard, Alexander Suh, Claudia C. Weber, Rute R. da Fonseca, Jianwen Li, Fang Zhang, Hui Li, Long Zhou, Nitish Narula, Liang Lu, Ganesh Ganapathy, Bastien Boussau, Md. Shamsuzzoha Bayzid, Volodymyr Zavidovych, Sankar Subramanian, Toni Gabaldon, Salvador Capella-Gutierrez, Jaime Huerta-Cepas, Bhanu Rekepalli, Kasper Munch, Mikkel Schierup, Bent Lindow, Wesley C. Warren, David Ray, Richard E. Green, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Shengbin Li, Ning Li, Yinhua Huang, Elizabeth Derryberry, Mads F. Bertelsen, Frederick H. Sheldon, Robb T. Brumfield, Claudio V. Mello, Peter V. Lovell, Morgan Wirthlin, Maria Paula Cruz Schneider, Francisco Prosdocimi, Jose Alfredo Samaniego, Ahmed Missael Vargas Velazquez, Alonzo Alfaro-Nunez, Paula F. Campos, Bent Petersen, Thomas Sicheritz-Ponten, An Pas, Tom Bailey, Paul Scofield, Michael Bunce, David M. Lambert, Qi Zhou, Polina L. Perelman, Amy C. Driskell, Beth Shapiro, Zijun Xiong, Yongli Zeng, Shiping Liu, Zhenyu Li, Binghang Liu, Kui Wu, Jin Xiao, Xiong Yinqi, Qiumei Zheng, Yong Zhang, Huanming Yang, Jian Wang, Linnea Smeds, Frank E. Rheindt, Michael Braun, Jon Fjeldsa, Ludovic Orlando, F. Keith Barker, Knud Andreas Jonsson, Warren E. Johnson, Klaus-Peter Koepfli, Stephen J. O'Brien, David Haussler, Oliver A. Ryder, Carsten Rahbek, Eske Willerslev, Gary R. Graves, Travis C. Glenn, John McCormack, Dave Burt, Hans Ellegren, Per Alstrom, Scott V. Edwards, Alexandros Stamatakis, David P. Mindell, Joel Cracraft, Edward L. Braun, Tandy Warnow, Wang Jun, M. Thomas P. Gilbert, Guojie Zhang
Biology Faculty Articles

Comparative Genomics Reveals Insights into Avian Genome Evolution and Adaptation, Guojie Zhang, Cai Li, Qiye Li, Bo Li, Denis M. Larkin, Chul Lee, Jay F. Storz, Agostinho Antunes, Matthew J. Greenwold, Robert W. Meredith, Anders Odeen, Jie Cui, Qi Zhou, Luohao Xu, Hailin Pan, Zongji Wang, Lijun Jin, Pei Zhang, Haofu Hu, Wei Yang, Jiang Hu, Jin Xiao, Zhikai Yang, Yang Liu, Qiaolin Xie, Hao Yu, Jinmin Lian, Ping Wen, Fang Zhang, Hui Li, Yongli Zeng, Zijun Xiong, Shiping Liu, Long Zhou, Zhiyong Huang, Na An, Jie Wang, Qiumei Zheng, Yingqi Xiong, Guangbiao Wang, Bo Wang, Jingjing Wang, Yu Fan, Rute R. da Fonseca, Alonzo Alfaro-Nunez, Mikkel Schubert, Ludovic Orlando, Tobias Mourier, Jason T. Howard, Ganeshkumar Ganapathy, Andreas Pfenning, Osceola Whitney, Miram V. Rivas, Erina Hara, Julia Smith, Marta Farre, Jitendra Narayan, Gancho Slavov, MIchael N. Romanov, Rui Borges, Joao Paulo Machado, Imran Khan, Mark S. Springer, John Gatesy, Frederico G. Hoffmann, Juan C. Opazo, Olle Hastad, Roger H. Sawyer, Heebal Kim, Kyu-Won Kim, Hyeon Jeong Kim, Seoae Cho, Ning Li, Yinhua Huang, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Mads F. Bertelsen, Elizabeth Derryberry, Wesley Warren, Richard K. Wilson, Shengbin Li, David A. Ray, Richard E. Green, Stephen J. O'Brien, Darren Griffin, Warren E. Johnson, David Haussler, Oliver A. Ryder, Eske Willerslev, Gary R. Graves, Per Alstrom, Jon Fjeldsa, David P. Mindell, Scott V. Edwards, Edward L. Braun, Carsten Rahbek, David W. Burt, Peter Houde, Yong Zhang, Huanming Yang, Jian Wang, Avian Genome Consortium, Erich D. Jarvis, M. Thomas P. Gilbert, Jun Wang
Biology Faculty Articles

Evolutionary Genomics and Adaptive Evolution of the Hedgehog Gene Family (Shh, Ihh and Dhh) in Vertebrates, Joana Pereira, Warren E. Johnson, Stephen J. O'Brien, Erich D. Jarvis, Guojie Zhang, M. Thomas P. Gilbert, Vitor Vasconcelos, Agostinho Antunes
Biology Faculty Articles

GWATCH: A Web Platform for Automated Gene Association Discovery Analysis, Anton Svitin, Sergey Malov, Nikolay Cherkasov, Paul Geerts, Mikhail Rotkevich, Pavel Dobrynin, Andrey Shevchenko, Li Guan, Jennifer L. Troyer, Sher L. Hendrickson, Holli Hutcheson Dilks, T. K. Oleksyk, Sharyne Donfield, Edward Gomperts, Douglas A. Jabs, Efe Sezgin, Mark Van Natta, P. Richard Harrigan, Zabrina L. Brumme, Stephen J. O'Brien
Biology Faculty Articles

Genetic Factors Involved in Human Colorectal Cancer Metastasis, Olga Bajenova, Stephen J. O'Brien
Biology Faculty Articles

Endogenous Retrovirus Insertion in the KIT Oncogene Determines White and White spotting in Domestic Cats, Victor A. David, Marilyn Menotti-Raymond, Andrea Coots Wallace, Melody E. Roelke, James Kehler, Robert Leighty, Eduardo Eizirik, Steven S. Hannah, George Nelson, Alejandro A. Schaffer, Catherine J. Connelly, Stephen J. O'Brien, David K. Ryugo
Biology Faculty Articles

Mammalian Keratin Associated Proteins (KRTAPs) Subgenomes: Disentangling Hair Diversity and Adaptation to Terrestrial and Aquatic Environments, Imran Khan, Emanuel Maldonado, Vitor Vasconcelos, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes
Marine & Environmental Sciences Faculty Articles

Annotated Features of Domestic Cat – Felis catus Genome, Gaik Tamazian, Serguei Simonov, Pavel Dobrynin, Alexey Makunin, Anton Logachev, Aleksey Komissarov, Andrey Shevchenko, Vladimir Brukhin, Nikolay Cherkasov, Anton Svitin, Klaus-Peter Koepfli, Joan Pontius, Carlos A. Driscoll, Kevin Blackistone, Cristina Barr, David Goldman, Agostinho Antunes, Javier Quilez, Belen Lorente-Galdos, Can Alkan, Tomas Marques-Bonet, Marilyn Menotti-Raymond, Victor A. David, Kristina Narfstrom, Stephen J. O'Brien
Biology Faculty Articles

Development of MHC-Linked Microsatellite Markers in the Domestic Cat and Their Use to Evaluate MHC Diversity in Domestic Cats, Cheetahs, and Gir Lions, Katrina M. Morris, Katherine Kirby, Julia A. Beatty, Vanessa R. Barrs, Sonia Cattley, Victor David, Stephen J. O'Brien, Marilyn Menotti-Raymond, Katherine Belov
Biology Faculty Articles

Carcinoembryonic Antigen Promotes Colorectal Cancer Progression by Targeting Adherens Junction Complexes, Olga Bajenova, Nina Chaika, Elena Tolkunova, Alexander Davydov-Sinitsyn, Svetlana Gapon, Peter Thomas, Stephen J. O'Brien
Biology Faculty Articles

Genetic Variations Affecting Serum Carcinoembryonic Antigen Levels and Status of Regional Lymph Nodes in Patients with Sporadic Colorectal Cancer from Southern China, Yu Liang, Weizhong Tang, Tiquiang Huang, Yong Gao, Aihua Tan, Xiaobo Yang, Haiying Zhang, Yanling Hu, Xue Qin, Shan Li, Shijun Zhang, Linjian Mo, Zhenjia Liang, Deyi Shi, Zhang Huang, Yingyong Guan, Jicheng Zhou, Cheryl Winkler, Stephen J. O'Brien, Jianfeng Xu, Zengnan Mo, Tao Peng
Marine & Environmental Sciences Faculty Articles

The Dynamic Proliferation of CanSINEs Mirrors the Complex Evolution of Feliforms, Kathryn B. Walters-Conte, Diana L. E. Johnson, Warren E. Johnson, Stephen J. O'Brien, Jill Pecon-Slattery
Biology Faculty Articles

Genome-Wide Mycobacterium tuberculosis Variation (GMTV) Database: A New Tool for Integrating Sequence Variations and Epidemiology, Ekaterina N. Chernyaeva, Marina V. Shulgina, Mikhail Rotkevich, Pavel Dobrynin, Serguei Simonov, Egor A. Shitikov, Dmitry S. Ischenko, Irina Y. Karpova, Elena S. Kostryukova, Elena N. Ilina, Vadim M. Govorun, Vyacheslav Y. Zhuravlev, Olga A. Manicheva, Peter K. Yablonsky, Yulia D. Isaeva, Elena Y. Nosova, Igor V. Mokrousov, Anna A. Vyazovaya, Olga V. Narvskaya, Alla L. Lapidus, Stephen J. O'Brien
Biology Faculty Articles

Gene Discovery and Data Sharing in Genome Wide Association Analyses: Lessons Form AIDS Genetic Restriction Genes, Stephen J. O'Brien, Anton Svitin, Sergey Malov, Nikolay Cherkasov, Pavel Dobrynin, Paul Geerts, Jennifer L. Troyer, Sher L. Hendrickson, Efe Sezgin, Holli Hutcheson
Biology Faculty Articles

Plagues, Populations & Survival, Stephen J. O'Brien
Biology Faculty Proceedings, Presentations, Speeches, Lectures

A Role for Genetic Technologies in Species Conservation- From the Cheetah to Beyond, Stephen J. O'Brien, W. E. Johnson, Carlos Driscoll, Pavel Dobrynin, L. Marker
Biology Faculty Proceedings, Presentations, Speeches, Lectures

Chapter 12: Forensic Animal DNA Analysis, Marilyn Menotti-Raymond, Victor A. David, Stephen J. O'Brien, Sree Kanthaswamy, Petar Projic, Vedrana Skaro, Gordan Lauc, Adrian Linacre
Biology Faculty Books and Book Chapters

Minke Whale Genome and Aquatic Adaptation in Cetaceans, Hyung-Soon Yim, Yun Sung Cho, Xuanmin Guang, Sung Gyun Kang, Jae-Yeon Jeong, Sun-Shin Cha, Hyun-Myung Oh, Jae-Hak Lee, Eun Chan Yang, Kae Kyoung Kwon, Yun Jae Kim, Tae Wan Kim, Wonduck Kim, Jeong Ho Jeon, Sang-Jin Kim, Dong Han Choi, Sungwoong Jho, Hak-Min Kim, Junsu Ko, Hyunmin Kim, Young-Ah Shin, Hyun-Ju Jung, Yuan Zheng, Zhuo Wang, Yan Chen, Ming Chen, Awei Jiang, Erli Li, Shu Zhang, Haolong Hou, Tae Hyung Kim, Lili Yu, Sha Liu, Kung Ahn, Jesse Cooper, Sing-Gi Park, Chang Pyo Hong, Wook Jin, Heui-Soo Kim, Chankyu Park, Kyooyeol Lee, Sung Chun, Phillip A. Morin, Stephen J. O'Brien, Hang Lee, Jumpei Kimura, Dae Yeon Moon, Andrea Manica, Jeremy Edwards, Byung Chul Kim, Sangsoo Kim, Jun Wang, Jong Bhak, Hyun Sook Lee, Jung-Hyun Lee
Biology Faculty Articles

The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes, GIGA Community of Scientists, Jose V. Lopez, Stephen J. O'Brien, Charles Messing, M. Christina Diaz, Nicole D. Fogarty, Matthew Johnston
Biology Faculty Articles

Evaluation and Integration of Genetic Signature for Prediction Risk of Nasopharyngeal Carcinoma in Southern China, Xiuchan Guo, Cheryl Winkler, Ji Li, Li Guan, Minzhong Tang, Jian Liao, Hong Deng, Guy de The, Yi Zeng, Stephen J. O'Brien
Biology Faculty Articles

Sympatric Asian Felid Phylogeography Reveals A Major Indochinese-Sundaic Divergence, Shu-Jin Luo, Yue Zhang, Warren E. Johnson, Lin Miao, Paolo Martelli, Agostinho Antunes, James L. D. Smith, Stephen J. O'Brien
Marine & Environmental Sciences Faculty Articles

Phylogeography and Population History of Leopardus guigna, the Smallest American Felid, Constanza Napolitano, Warren E. Johnson, Jim Sanderson, Stephen J. O'Brien, A. Rus Hoelzel, Rachel Freer, Nigel Dunstone, Kermit Ritland, Carol E. Ritland, Elie Poulin
Biology Faculty Articles

Genome-Wide and Differential Proteomic Analysis of Hepatitis B Virus and Aflatoxin B1 Related Hepatocellular Carcinoma in Guangxi, China, Lu-Nan Qi, Le-Qun Qi, Yuan-Yuan Chen, Zhao-Hong Chen, Tao Bai, Bang-De Xiang, Xiao Qin, Kai-Yin Xiao, Min-Hao Peng, Zhi-Ming Liu, Tang-Wei Liu, Xue Qin, Shan Li, Ze-Guang Han, Zeng-Nan Mo, Regina M. Santella, Cheryl Winkler, Stephen J. O'Brien, Tao Peng
Biology Faculty Articles

Evolution: A New Cat Species Emerges, Stephen J. O'Brien, Klaus-Peter Koepfli
Biology Faculty Articles

A Genome-To-Genome Analysis of Associations between Human Genetic Variation, HIV-1 Sequence Diversity, and Viral Control, Istvan Bartha, Jonathan M. Carlson, Chanson J. Brumme, Paul J. McLaren, Zabrina L. Brumme, Mina John, David W. Haas, Javier Martinez-Picado, Judith Dalmau, Cecilio Lopez-Galindez, Concepcion Casado, Andri Rauch, Huldrych F. Gunthard, Enos Bernasconi, Pietro Vernazza, Thomas Klimkait, Sabine Yerly, Stephen J. O'Brien, Jennifer Listgarten, Nico Pfeifer, Christoph Lippert, Nicolo Fusi, Zoltan Kutalik, Todd M. Allen, Viktor Muller, P. Richard Harrigan, David Heckerman, Amalio Telenti, Jacques Fellay
Biology Faculty Articles

On Survival Categorical Methods with Applications in Epidemiology and AIDS Research, Sergey Malov, Stephen J. O'Brien
Biology Faculty Proceedings, Presentations, Speeches, Lectures

Whole Genome Sequence Coverage Estimation Re-examined, Alexey Antonik, Stephen J. O'Brien, Sergey Malov
Biology Faculty Proceedings, Presentations, Speeches, Lectures

The Tiger Genome and Comparative Analysis with Lion and Snow Leopard Genomes, Yun Sung Cho, Li Hu, Haolong Hou, Hang Lee, Jiaohui Xu, Soowhan Kwon, Sukhun Oh, Hak-Min Kim, Sungwoong Jho, Sangsoo Kim, Young-Ah Shin, Byung Chul Kim, Hyunmin Kim, Chang-uk Kim, Shu-Jin Luo, Warren E. Johnson, Klaus-Peter Koepfli, A. Schmidt-Kunzel, Jason A. Turner, L. Marker, Cindy K. Harper, Susan M. Miller, Wilhelm Jacobs, Laura D. Bertola, Tae Hyung Kim, Sunghoon Lee, Qian Zhou, Hyun-Ju Jung, Xiao Xu, Priyvrat Gadhvi, Pengwei Xu, Yingqi Xiong, Yadan Luo, Shengkai Pan, Caiyun Gou, Xiuhui Chu, Jilin Zhang, Sanyang Liu, Jing He, Ying Chen, Linfeng Yang, Yulan Yang, Jiaju He, Sha Liu, Junyi Wang, Chul Hong Kim, Hwanjong Kwak, Jong-Soo Kim, Seungwoo Hwang, Junsu Ko, Chang-Bae Kim, Sangtae Kim, Damdin Bayarlkhagva, Woon Kee Paek, Seong-Jin Kim, Stephen J. O'Brien, Jun Wang, Jong Bhak
Biology Faculty Articles

The "Exotic Aliens" Controversy: A View from Afar, Stephen J. O'Brien
Biology Faculty Articles

Browser for a Genome, Serguei Simonov, Alexey Makunin, Stephen J. O'Brien
Biology Faculty Articles

Host Genomic Influences on HIV/AIDS, Stephen J. O'Brien, Sher L. Hendrickson
Biology Faculty Articles

Molecular Evidence for a Recent Demographic Expansion in the Puma (Puma concolor) (Mammalia, Felidae), Eunice M. Matte, Camila S. Castilho, Renata A. Miotto, Denis A. Sana, Warren E. Johnson, Stephen J. O'Brien, Thales R. O. de Freitas, Eduardo Eizirik
Biology Faculty Articles

How the Leopard Hides its Spots: ASIP Mutations and Melanism in Wild Cats, Alexsandra Schneider, Victor A. David, Warren E. Johnson, Stephen J. O'Brien, Gregory S. Barsh, Marilyn Menotti-Raymond, Eduardo Eizirik
Biology Faculty Articles

Fish Lateral Line Innovation: Insights into the Evolutionary Genomic Dynamics of a Unique Mechanosensory Organ, Siby Philip, Joao P. Machado, Emanuel Maldonado, Vitor Vasconcelos, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes
Biology Faculty Articles

The Role of Gene Duplication and Unconstrained Selective Pressures in the Melanopsin Gene Family Evolution and Vertebrate Circadian Rhythm Regulation, Rui Borges, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Biology Faculty Articles

The Principal Genetic Determinants for Nasopharyngeal Carcinoma in China Involve the HLA Class I Antigen Recognition Groove, Minzhong Tang, J. A. Lautenberger, Xiaojiang Gao, Efe Sezgin, Sher L. Hendrickson, Jennifer L. Troyer, Victor A. David, Li Guan, Carl McIntosh, Xiuchan Guo, Yuming Zheng, Jian Liao, Hong Deng, Michael Malasky, Bailey Kessing, Cheryl Winkler, Mary Carrington, Guy de The, Yi Zeng, Stephen J. O'Brien
Biology Faculty Articles

The Fishes of Genome 10K, Giacomo Bernardi, Edward O. Wiley, Hicham Mansour, Michael R. Miller, Guillermo Orti, David Haussler, Stephen J. O'Brien, Oliver A. Ryder, Byrappa Venkatesh
Biology Faculty Articles

Specifying and Sustaining Pigmentation Patterns in Domestic and Wild Cats, Christopher B. Kaelin, Xiao Xu, Lewis Z. Hong, Victor A. David, Kelly A. McGowan, A. Schmidt-Kunzel, Melody E. Roelke, Javier Pino, J. U. Pontius, Gregory M. Cooper, Hermogenes Manuel, William Swanson, L. Marker, Cindy K. Harper, Ann van Dyk, Bisong Yue, James C. Mullikin, Wesley C. Warren, Eduardo Eizirik, Lidia Kos, Stephen J. O'Brien, Gregory S. Barsh, Marilyn Menotti-Raymond
Biology Faculty Articles

Risk Factors for Symptomatic Hyperlactatemia and Lactic Acidosis Among Combination Antiretroviral Therapy-Treated Adults in Botswana: Results from a Clinical Trial, C. William Wester, Svetlana K. Eden, Bryan E. Shepherd, Herman Bussmann, Vladimir Novitsky, David C. Samuels, Sher L. Hendrickson, Cheryl Winkler, Stephen J. O'Brien, Max Essex, Richard T. D'Aquila, Victor deGruttola, Richard G. Marlink
Biology Faculty Articles

Evolution of CRISPs Associated with Toxicoferan-Reptilian Venom and Mammalian Reproduction, Kartik Sunagar, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Biology Faculty Articles

Tissue sampling methods and standards for vertebrate genomics, Pamela B.Y. Wong, Edward O. Wiley, Warren E. Johnson, Oliver A. Ryder, Stephen J. O'Brien, David Haussler, Klaus Peter Koepfli, Marlys L. Houck, Polina Perelman, Gabriela Mastromonaco, Andrew C. Bentley, Byrappa Venkatesh, Ya Ping Zhang, Robert W. Murphy
Biology Faculty Articles

A Postulate for Tiger Recovery: The Case of the Caspian Tiger, Carlos A. Driscoll, I. Chestin, H. Jungius, O. Pereladova, Y. darman, E, Dinerstein, J. Seidensticker, J. Sanderson, S. Christie, Shu-Jin Luo, S. Shrestha, Y. Zhuravlev, Olga Uphyrkina, Y. V. Jhala, S. P. Yadav, D. G. Pikunov, Nobuyuki Yamaguchi, David E. Wildt, J. L. D. Smith, L. Marker, P. J. Nyhus, R. Tilson, David W. Macdonald, Stephen J. O'Brien
Biology Faculty Articles

A Population Genetic Database of Cat Breeds Developed in Coordination with a Domestic Cat STR Multiplex, Marilyn Menotti-Raymond, Victor A. David, Bruce S. Weir, Stephen J. O'Brien
Biology Faculty Articles

Multicohort Genomewide Association Study Reveals a New Signal of Protection Against HIV-1 Acquisition, Sophie Limou, Olivier Delaneau, Danielle van Manen, Ping An, Efe Sezgin, Sigrid Le Clerc, Cedric Coulonges, Jennifer L. Troyer, Jan H. Veldink, Leonard H. van den Berg, Jean-Louis Spadoni, Lieng Taing, Taoufik Labib, Matthieu Montes, Jean-Francois Delfraissy, Francois Schachter, Stephen J. O'Brien, Susan Buchbinder, Mark Van Natta, Douglas A. Jabs, Philippe Froguel, Hanneke Schuitemaker, Cheryl Winkler, Jean-Francois Zagury
Biology Faculty Articles

Genetic Association and Gene-Gene Interaction Analyses in African American Dialysis Patients With Nondiabetic Nephropathy, Meredith A. Bostrom, W. H. Linda Kao, Man Li, Hanna E. Abboud, Sharon G. Adler, Sudha K. Iyengar, Paul L. Kimmel, Robert L. Hanson, Susanne B. Nicholas, Rebekah S. Rasooly, John R. Sedor, Josef Coresh, Orly F. Kohn, David J. Leehey, Denyse Thornley-Brown, Erwin P. Bottinger, Michael S. Lipkowitz, Lucy A. Meoni, Michael J. Klag, Lingyi Lu, Pamela J. Hicks, Carl D. Langefeld, Rulan S. Parekh, Donald W. Bowden, Barry I. Freedman, Stephen J. O'Brien, Family Investigation of Nephropathy and Diabetes (FIND) Research Group
Biology Faculty Articles

Emerging Viruses in the Felidae: Shifting Paradigms, Stephen J. O'Brien, Jennifer L. Troyer, Meredith Brown, Warren E. Johnson, Agostinho Antunes, Melody E. Roelke, Jill Pecon-Slattery
Biology Faculty Articles

Genome Empowerment for the Puerto Rican Parrot – Amazona vittata, Stephen J. O'Brien
Biology Faculty Articles

Tissue Sampling Methods and Standards for Vertebrate Genomics, Pamela B. Y. Wong, Edward O. Wiley, Warren E. Johnson, Oliver A. Ryder, Stephen J. O'Brien, David Haussler, Klaus-Peter Koepfli, Marlys L. Houck, Polina L. Perelman, Gabriela Mastromonaco, Andrew C. Bentley, Byrappa Venkatesh, Ya-ping Zhang, Robert W. Murphy, Genome 10K Project Community of Scientists
Biology Faculty Articles

Does Genetic Introgression Improve Female Reproductive Performance? A Test on the Endangered Florida Panther, Jeffrey A. Hostetler, David P. Onorato, Benjamin M. Bolker, Warren E. Johnson, Stephen J. O'Brien, Deborah Jansen, Madan K. Oli
Biology Faculty Articles

Subspecific Status of the Korean Tiger Inferred by Ancient DNA Analysis, Mu-Yeong Lee, Jee Yun Hyun, Seo-Jin Lee, Junghwa An, Eunok Lee, Mi-Sook Min, Junpei Kimura, Shin-ichirio Kawada, Nozomi Kurihara, Shu-Jin Luo, Stephen J. O'Brien, Warren E. Johnson, Hang Lee
Biology Faculty Articles

Adaptive Evolution of the Matrix Extracellular Phosphoglycoprotein in Mammals, Joao P. Machado, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Biology Faculty Articles

FIV Diversity: FIVPle Subtype Composition May Influence Disease Outcome in African Lions, Jennifer L. Troyer, Melody E. Roelke, Jillian M. Jespersen, Natalie Baggett, Valerie A. Buckley-Beason, Dan MacNulty, Meggan Craft, Craig Packer, Jill Pecon-Slattery, Stephen J. O'Brien
Biology Faculty Articles

Role of Exonic Variation in Chemokine Receptor Genes on AIDS: CCRL2 F167Y Association with Pneumocystis Pneumonia, Ping An, Rongling Li, Ji Ming Wang, Teizo Yoshimura, Munehisa Takahashi, Ram Samudralal, Stephen J. O'Brien, John Phair, James J. Goedert, Gregory D. Kirk, Jennifer L. Troyer, Efe Sezgin, Susan Buchbinder, Sharyne Donfield, George W. Nelson, Cheryl Winkler
Biology Faculty Articles

Intentional Genetic Introgression Influences Survival of Adults and Subadults in a Small, Inbred Felid Population, John F. Benson, Jeffrey A. Hostetler, David P. Onorato, Warren E. Johnson, Melody E. Roelke, Stephen J. O'Brien, Deborah Jansen, Madan K. Oli
Biology Faculty Articles

Restoring Tigers to the Caspian Region, Carlos A. Driscoll, Shu-Jin Luo, David W. Macdonald, E, Dinerstein, I. Chestin, O. Pereladova, Stephen J. O'Brien
Biology Faculty Articles

Reply:, Xiuchan Guo, Randy Johnson, Stephen J. O'Brien
Biology Faculty Articles

Association of Host Genetic Risk Factors with the Course of Cytomegalovirus Retinitis in Patients Infected with Human Immunodeficiency Virus, Efe Sezgin, Mark Van Natta, Alka Ahuja, Alice Lyon, Sunil Srivastava, Jennifer L. Troyer, Stephen J. O'Brien, Douglas A. Jabs, Studies of the Ocular Complications of AIDS Research Group
Biology Faculty Articles

Genome-Wide Association Study Implicates PARD3B-Based AIDS Restriction, Jennifer L. Troyer, George W. Nelson, J. A. Lautenberger, Leslie Chinn, Carl McIntosh, Randall C. Johnson, Efe Sezgin, Bailey Kessing, Michael Malasky, Sher L. Hendrickson, Guan Li, J. U. Pontius, M. Tang, Ping An, Cheryl Winkler, Sophie Limou, Sigrid le Clerc, Olivier Delaneau, Jean-Francois Zagury, Hanneke Schuitemaker, Danielle van Manen, Jay H. Bream, Edward Gomperts, Susan Buchbinder, James J. Goedert, Gregory Kirk, Stephen J. O'Brien
Biology Faculty Articles

A Common HLA–DPA1 Variant is a Major Determinant of Hepatitis B Virus Clearance in Han Chinese, Ping An, Cheryl Winkler, Li Guan, Stephen J. O'Brien, Zheng Zeng, HBV Study Consortium
Biology Faculty Articles

A Molecular Phylogeny of Living Primates, Polina L. Perelman, Warren E. Johnson, Christian Roos, Hector Seuanez, Julie E. Horvath, Miguel A. M. Moreira, Bailey Kessing, J. U. Pontius, Melody E. Roelke, Yves Rumpler, Maria P. C. Schneider, Artur Silva, Stephen J. O'Brien, Jill Pecon-Slattery
Biology Faculty Articles

Evolution of a Major Drug Metabolizing Enzyme Defect in the Domestic Cat and Other Felidae: Phylogenetic Timing and the Role of Hypercarnivory, Binu Shrestha, J. Michael Reed, Philip T. Starks, Gretchen E. Kaufman, Jared V. Goldstone, Melody E. Roelke, Stephen J. O'Brien, Klaus-Peter Koepfli, Laurence Frank, Michael H. Court
Biology Faculty Articles

Strong Influence of Human Leukocyte Antigen (HLA)-DP Gene Variants on Development of Persistent Chronic Hepatitis B Virus Carriers in the Han Chinese Population, Xiuchan Guo, Yong Zhang, Ji Li, Jingchen Ma, Zuli Wei, Wenjie Tan, Stephen J. O'Brien
Biology Faculty Articles

A Suite of Genetic Markers Useful in Assessing Wildcat (Felis silvestris ssp.)— Domestic Cat (Felis silvestris catus) Admixture, Carlos A. Driscoll, Nobuyuki Yamaguchi, Stephen J. O'Brien, David W. Macdonald
Biology Faculty Articles

Genome-Wide Characterization of Centromeric Satellites from Multiple Mammalian Genomes, Can Alkan, Maria Francesca Cardone, Claudia Rita Catacchio, Francesca Antonacci, Stephen J. O'Brien, Oliver A. Ryder, Stefania Purgato, Monica Zoli, Evan E. Eichler, Mario Ventura
Biology Faculty Articles

Applying Molecular Genetic Tools to Tiger Conservation, Shu-Jin Luo, Warren E. Johnson, Stephen J. O'Brien
Biology Faculty Articles

Genetic Associations of Variants in Genes Encoding HIV-Dependency Factors Required for HIV-1 Infection, Leslie Chinn, M. Tang, Bailey Kessing, J. A. Lautenberger, Jennifer L. Troyer, Michael Malasky, Carl McIntosh, Gregory D. Kirk, Steven M. Wolinsky, Susan Buchbinder, Edward Gomperts, James J. Goedert, Stephen J. O'Brien
Biology Faculty Articles

Genetic Future for Florida Panthers - Response, Warren E. Johnson, David P. Onorato, Melody E. Roelke, E. Darrell Land, Stephen J. O'Brien
Biology Faculty Articles

Genetic Introgression and the Survival of Florida Panther Kittens, Jeffrey A. Hostetler, David P. Onorato, James D. Nichols, Warren E. Johnson, Melody E. Roelke, Stephen J. O'Brien, Deborah Jansen, Madan K. Oli
Biology Faculty Articles

Widespread Retinal Degenerative Disease Mutation (rdAc) Discovered among a Large Number of Popular Cat Breeds, Marilyn Menotti-Raymond, Victor A. David, Solveig M. Pflueger, Melody E. Roelke, J. S. Kehler, Stephen J. O'Brien, Kristina Narfstrom
Biology Faculty Articles

Genetic Variants in Nuclear-Encoded Mitochondrial Genes Influence AIDS Progression, Sher L. Hendrickson, J. A. Lautenberger, Leslie Wei Chinn, Michael Malasky, Lawrence Kingsley, James J. Goedert, Gregory D. Kirk, Edward Gomperts, Susan Buchbinder, Jennifer L. Troyer, Stephen J. O'Brien
Biology Faculty Articles

Examination of Disease-Based Selection, Demographic History and Population Structure in European Y-Chromosome Haplogroup I, Efe Sezgin, Alyssa Drosdak, Carl McIntosh, Bailey Kessing, J. A. Lautenberger, James J. Goedert, John Phair, Jennifer L. Troyer, Michael W. Smith, Stephen J. O'Brien
Biology Faculty Articles

Genetic Restoration of the Florida Panther, Warren E. Johnson, David P. Onorato, Melody E. Roelke, E. Darrell Land, Mark W. Cunningham, Robert C. Belden, Roy McBride, Deborah Jansen, Mark Lotz, David B. Shindle, JoGayle Howard, David E. Wildt, Linda M. Penfold, Jeffrey A. Hostetler, Madan K. Oli, Stephen J. O'Brien
Biology Faculty Articles

Effect of Host Genetics on Incidence of HIV Neuroretinal Disorder in Patients with AIDS, Efe Sezgin, Sher L. Hendrickson, Douglas A. Jabs, Mark Van Natta, Richard A. Lewis, Jennifer L. Troyer, Stephen J. O'Brien, SOCA Research Group
Biology Faculty Articles

Effect of Host Genetics on the Development of Cytomegalovirus Retinitis in Patients with AIDS, Efe Sezgin, Douglas A. Jabs, Sher L. Hendrickson, Mark Van Natta, Alexander Zdanov, Richard A. Lewis, Michael W. Smith, Jennifer L. Troyer, Stephen J. O'Brien, SOCA Research Group
Biology Faculty Articles

Pattern and Timing of Diversification of the Mammalian Order Carnivora Inferred from Multiple Nuclear Gene Sequences, Eduardo Eizirik, William J. Murphy, Klaus-Peter Koepfli, Warren E. Johnson, J. W. Dragoo, Robert K. Wayne, Stephen J. O'Brien
Biology Faculty Articles

Genetic Polymorphisms of CYP2E1, GSTP1, NQO1 and MPO and the Risk of Nasopharyngeal Carcinoma in a Han Chinese Population of Southern China, Xiuchan Guo, Yi Zeng, Hong Deng, Jian Liao, Yuming Zheng, Ji Li, Bailey Kessing, Stephen J. O'Brien
Biology Faculty Articles

Mutation Discovered in a Feline Model of Human Congenital Retinal Blinding Disease, Marilyn Menotti-Raymond, Koren Holland Deckman, Victor David, Jaimie Myrkalo, Stephen J. O'Brien, Kristina Narfstrom
Biology Faculty Articles

Haplotype-Dependent HLA Susceptibility to Nasopharyngeal Carcinoma in a Southern Chinese Population, M. Tang, Yi Zeng, A. Poisson, D. Marti, Li Guan, Yuming Zheng, Hong Deng, Jian Liao, Xiuchan Guo, S. Sun, G. Nelson, Guy de The, Cheryl Winkler, Stephen J. O'Brien, Mary Carrington, Xiaojiang Gao
Biology Faculty Articles

Mitochondrial Haplogroups Are Associated With Risk of Neuroretinal Disorder in HIV-Positive Patients, Sher L. Hendrickson, Douglas A. Jabs, Mark Van Natta, Richard Alan Lewis, Douglas C. Wallace, Stephen J. O'Brien
Biology Faculty Articles

Feline Immunodeficiency Virus (FIV) in Wild Pallas' Cats, Meredith Brown, Bariushaa Munkhtsog, Jennifer L. Troyer, Steve Ross, Rani Sellers, Amanda E. Fine, William Swanson, Melody E. Roelke, Stephen J. O'Brien
Biology Faculty Articles

Multistage Genomewide Association Study Identifies a Locus at 1q41 Associated with Rate of HIV-1 Disease Progression to Clinical AIDS, Joshua T. Herbeck, Geoffrey S. Gottlieb, Cheryl Winkler, George W. Nelson, Ping An, Brandon S. Maust, Kim G. Wong, Jennifer L. Troyer, James J. Goedert, Bailey Kessing, Roger Detels, Steven M. Wolinsky, Jeremy J. Martinson, Susan Buchbinder, Gregory D. Kirk, Lisa Jacobson, Joseph Margolick, Richard A. Kaslow, Stephen J. O'Brien, James I. Mullins
Biology Faculty Articles

Molecular Evolution and the Role of Oxidative Stress in the Expansion and Functional Diversification of Cytosolic Glutathione Transferases, Rute R. da Fonseca, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Biology Faculty Articles

Accounting for Multiple Comparisons in a Genome-Wide Association Study (GWAS), Randall C. Johnson, George W. Nelson, Jennifer L. Troyer, J. A. Lautenberger, Bailey Kessing, Cheryl Winkler, Stephen J. O'Brien
Biology Faculty Articles

Light Whole Genome Sequence for SNP Discovery Across Domestic Cat Breeds, James C. Mullikin, Nancy F. Hansen, Lei Shen, Heather Ebling, William F. Donahue, Wei Tao, David J. Saranga, Adrianne Brand, Marc J. Rubenfield, Alice C. Young, Pedro Cruz, Carlos Driscoll, Victor David, Samer W. K. Al-Murrani, Mary F. Locniskar, Mitchell S. Abrahamsen, Stephen J. O'Brien, Douglas R. Smith, Jeffrey A. Brockman
Biology Faculty Articles

Defining and Mapping Mammalian Coat Pattern Genes: Multiple Genomic Regions Implicated in Domestic Cat Stripes and Spots, Eduardo Eizirik, Victor A. David, Valerie A. Buckley-Beason, Melody E. Roelke, Alejandro A. Schaffer, Steven S. Hannah, Kristina Narfstrom, Stephen J. O'Brien, Marilyn Menotti-Raymond
Biology Faculty Articles

Genome-Wide Scans for Footprints of Natural Selection, T. K. Oleksyk, Michael W. Smith, Stephen J. O'Brien
Biology Faculty Articles

Common Genetic Variation and the Control of HIV-1 in Humans, Jacques Fellay, Dongliang Ge, Kevin V. Shianna, Sara Colombo, Bruno Ledergerber, Elizabeth T. Cirulli, Thomas J. Urban, Kunlin Zhang, Curtis Gumbs, Jason P. Smith, Antonella Castagna, Alessandro Cozzi-Lepri, Andrea de Luca, Philippa Easterbrook, Huldrych F. Gunthard, Simon Mallal, Cristina Mussini, Judith Dalmau, Javier Martinez-Picado, Jose M. Miro, Niels Obel, Steven M. Wolinsky, Jeremy J. Martinson, Roger Detels, Joseph Margolick, Lisa Jacobson, Patrick Descombes, Stylianos E. Antonarakis, Jacques S. Beckmann, Stephen J. O'Brien, Norman L. Letvin, Andrew J. McMichael, Barton F. Haynes, Mary Carrington, Sheng Feng, Amalio Telenti, David B. Goldstein, NIAID Center for HIV/AIDS Vaccine Immunology (CHAVI)
Biology Faculty Articles

Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species, David Haussler, Stephen J. O'Brien, Oliver A. Ryder, F. Keith Barker, Michele Clamp, Andrew J. Crawford, Robert Hanner, Olivier Hanotte, Warren E. Johnson, Jimmy A. McGuire, Webb Miller, Robert W. Murphy, William J. Murphy, Frederick H. Sheldon, Barry Sinervo, Byrappa Venkatesh, Edward O. Wiley, Fred W. Allendorf, George Amato, C. Scott Baker, Aaron Bauer, Albano Beja-Pereira, Eldredge Bermingham, Giacomo Bernardi, Cibele R. Bonvicino, Sydney Brenner, Terry Burke, Joel Cracraft, Mark Diekhans
Biology Faculty Articles

Every Genome Sequence Needs a Good Map, Harris A. Lewin, Denis M. Larkin, J. U. Pontius, Stephen J. O'Brien
Biology Faculty Articles

CCL3L1 and HIV/AIDS Susceptibility, Thomas J. Urban, Amy C. Weintrob, Jacques Fellay, Sara Colombo, Kevin V. Shianna, Curtis Gumbs, Margalida Rotger, Kimberly Pelak, Kristen K. Dang, Roger Detels, Jeremy J. Martinson, Stephen J. O'Brien, Norman L. Letvin, Andrew J. McMichael, Barton F. Haynes, Mary Carrington, Amalio Telenti, Nelson L. Michael, David B. Goldstein
Biology Faculty Articles

Retinal Degeneration in the Abyssinian and Somali Cat (rdAc): Correlation between Genotype and Phenotype and rdAc Allele Frequency in Two Continents, Kristina Narfstrom, Victor David, Oswald Jarret, Julia A. Beatty, Vanessa R. Barrs, David Wilkie, Stephen J. O'Brien, Marilyn Menotti-Raymond
Biology Faculty Articles

Genetics and Pathogenesis of Feline Infectious Peritonitis Virus, Meredith Brown, Jennifer L. Troyer, Jill Pecon-Slattery, M. Roelke-Parker, Stephen J. O'Brien
Biology Faculty Articles

Analyses of Sweet Receptor Gene (Tas1r2) and Preference for Sweet Stimuli in Species of Carnivora, Xia Li, Dieter Glaser, Weihua Li, Warren E. Johnson, Stephen J. O'Brien, Gary K. Beauchamp, Joseph G. Brand
Biology Faculty Articles

Pathological Manifestations of Feline Immunodeficiency Virus (FIV) Infection in Wild African Lions, Melody E. Roelke, Meredith Brown, Jennifer L. Troyer, Hanlie Winterbach, Christiaan Winterbach, Graham Hemson, Dahlem Smith, Randall C. Johnson, Jill Pecon-Slattery, Alfred L. Roca, Kathleen A. Alexander, Lin Klein, Paolo Martelli, Karthiyani Krishnasamy, Stephen J. O'Brien
Biology Faculty Articles

Mapping of the Domestic Cat ‘‘SILVER’’ Coat Color Locus Identifies a Unique Genomic Location for Silver in Mammals, Marilyn Menotti-Raymond, Victor A. David, Eduardo Eizirik, Melody E. Roelke, Helya Ghaffari, Stephen J. O'Brien
Biology Faculty Articles

Artifacts of the 1.93 Feline Genome Assembly Derived from the Feline- Specific Satellite Sequence, J. U. Pontius, Stephen J. O'Brien
Biology Faculty Articles

Molecular Genetic Evidence for Social Group Disruption of Wild Vicuñas Vicugna vicugna Captured for Wool Harvest in Chile, Ronald J. Sarno, Benito A. Gonzalez, Cristian Bonacic, Beatriz Zapata, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Mitochondrial DNA Haplogroups Influence Lipoatrophy After Highly Active Antiretroviral Therapy, Sher L. Hendrickson, Lawrence Kingsley, Eduardo Ruiz-Pesini, Jason C. Poole, Lisa Jacobson, Frank J. Pallela, Jay Bream, Douglas C. Wallace, Stephen J. O'Brien
Biology Faculty Articles

The Taming of the Cat, Carlos A. Driscoll, Juliet Clutton-Brock, Andrew C. Kitchener, Stephen J. O'Brien
Biology Faculty Articles

Extended IL10 Haplotypes and their Association with HIV Progression to AIDS, T. K. Oleksyk, Sadeep Shrestha, Ann L. Truelove, James J. Goedert, Sharyne Donfield, John Phair, Shruti Mehta, Stephen J. O'Brien, M. W. Smith
Biology Faculty Articles

Evaluation of Nonviral Risk Factors for Nasopharyngeal Carcinoma in a High-Risk Population of Southern China, Xiuchan Guo, Randall C. Johnson, Hong Deng, Jian Liao, Li Guan, George W. Nelson, Mingzhong Tang, Yuming Zheng, Guy de The, Stephen J. O'Brien, Cheryl Winkler, Yi Zeng
Biology Faculty Articles

From Wild Animals to Domestic Pets, an Evolutionary View of Domestication, Carlos A. Driscoll, David W. Macdonald, Stephen J. O'Brien
Biology Faculty Articles

An Autosomal Genetic Linkage Map of the Domestic Cat, Felis silvestris catus, Marilyn Menotti-Raymond, Victor A. David, Alejandro A. Schaffer, James F. Tomlin, Eduardo Eizirik, Cornel Phillip, David Wells, J. U. Pontius, Steven S. Hannah, Stephen J. O'Brien
Biology Faculty Articles

Association of Y Chromosome Haplogroup I with HIV Progression, and HAART Outcome, Efe Sezgin, Joanne M. Lind, Sadeep Shrestha, Sher L. Hendrickson, James J. Goedert, Sharyne Donfield, Gregory D. Kirk, John Phair, Jennifer L. Troyer, Stephen J. O'Brien, Michael W. Smith
Biology Faculty Articles

A Domestic Cat X Chromosome Linkage Map and the Sex-Linked orange Locus: Mapping of orange, Multiple Origins and Epistasis Over nonagouti, A. Schmidt-Kunzel, George Nelson, Victor A. David, Alejandro A. Schaffer, Eduardo Eizirik, M. Roelke-Parker, J. S. Kehler, Steven S. Hannah, Stephen J. O'Brien, Marilyn Menotti-Raymond
Biology Faculty Articles

Mitochondrial Phylogeography Illuminates the Origin of the Extinct Caspian Tiger and Its Relationship to the Amur Tiger, Carlos A. Driscoll, Nobuyuki Yamaguchi, Gila Kahila Bar-Gal, Alfred L. Roca, Shu-Jin Luo, David W. Macdonald, Stephen J. O'Brien
Biology Faculty Articles

Comparative Genomics in Vertebrates: a Role for the Platypus, Stephen J. O'Brien
Biology Faculty Articles

Camelid Genomics: Anticipating the Future, Warren E. Johnson, Polina L. Perelman, Stephen J. O'Brien
Biology Faculty Articles

Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10,000 Vertebrate Species, Genome 10K Community of Scientists, Stephen J. O'Brien
Biology Faculty Articles

Stewardship of Human Biospecimens, DNA, Genotype, and Clinical Data in the GWAS Era, Stephen J. O'Brien
Biology Faculty Articles

Unsung Hero Robert C. Gallo, Giovanni Abbadessa, Roberto Accolla, Fernando Aiuti, Adriana Albini, Anna Aldovini, Massimo Alfano, Guido Antonelli, Courtenay Bartholomew, Zvi Bentwich, Umberto Bertazzoni, Jay A. Berzofsky, Peter Biberfeld, Enzo Boeri, Luigi Buonaguro, Franco M. Buonaguro, Michael Bukrinsky, Arsene Burny, Arnaldo Caruso, Sharon Cassol, Prakash Chandra, Luca Ceccherini-Nelli, Luigi Chieco-Bianchi, Mario Clerici, Sandra Colombini-Hatch, Carlo de Giuli Morghen, Andrea de Maria, Anita de Rossi, Manfred Dierich, Riccardo Della-Favera, Antonina Dolei, Daniel Douek, Volker Erfle, Barbara Felber, Simona Fiorentini, Genoveffa Franchini, Jonathan M. Gershoni, Frances Gotch, Patrick Green, Warner C. Greene, William Hall, William Haseltine, Stephens Jacobson, Lars O. Kallings, Vaniambadi S. Kalyanaraman, Hermann Katinger, Kamel Khalili, George Klein, Eva Klein, Mary Klotman, Paul Klotman, Moshe Kotler, Reinhard Kurth, Alain Lafeuillade, Michelangelo La Placa, Jonathan Lewis, Flavia Lillo, Julianna Lisziewicz, Anita Lomonico, Lucia Lopalco, Franco Lori, Paolo Lusso, Beatrice Macchi, Michael Malim, Leonid Margolis, Phillip D. Markham, Myra McClure, Nancy Miller, Maria C. Mingari, Lorenzo Moretta, Douglas Noonan, Stephen J. O'Brien, Takashi Okamoto, Ranajit Pal, Peter Palese, Amos Panet, Giuseppe Pantaleo, George Pavlakis, Mauro Pistello, Stanley Plotkin, Guido Poli, Roger Pomerantz, Antonia Radaelli, Marjorie Robert-Guroff, Mario Roederer, Mangalasseril G. Sarngadharan, Dominique Schols, Paola Secchiero, Gene M. Shearer, Antonio Siccardi, Mario Stevenson, Jan Svoboda, Jim Tartaglia, Giuseppe Torelli, Maria L. Tornesello, Erwin Tschachler, Mauro Vaccarezza, Angelika Vallbracht, Jan van Lunzen, Oliviero Varnier, Elisa Vicenzi, Harald von Melchner, Isaac Witz, Daniel Zagury, Jean-Francois Zagury, Giorgio Zauli, Donaldo Zipeto
Biology Faculty Articles

Guidelines for Naming Nonprimate APOBEC3 Genes and Proteins, Rebecca S. LaRue, Valgerdur Andresdottir, Yannick Blanchard, Silvestro G. Conticello, David Derse, Michael Emerman, Warner C. Greene, Stefan R. Jonsson, Nathaniel R. Landau, Martin Lochelt, Harmit S. Malik, Michael H. Malim, Carsten Munk, Stephen J. O'Brien, Vinay K. Pathak, Klaus Strebel, Simon Wain-Hobson, Xiao-Fang Yu, Naoya Yuhki, Reuben S. Harris
Biology Faculty Articles

Chromosome Painting Shows That Skunks (Mephitidae, Carnivora) Have Highly Rearranged Karyotypes, Polina L. Perelman, A. S. Graphodatsky, J. W. Dragoo, N. A. Serdyukova, Gary Stone, P. Cavagna, Marilyn Menotti-Raymond, W. Nie, P. C. M. O'Brien, J. Wang, S. Burkett, K. Yuki, Melody E. Roelke, Stephen J. O'Brien, F. Yang, R. Stanyon
Biology Faculty Articles

The Evolutionary Dynamics of the Lion Panthera leo Revealed by Host and Viral Population Genomics, Agostinho Antunes, Jennifer L. Troyer, Melody E. Roelke, Jill Pecon-Slattery, Craig Packer, Christiaan Winterbach, Graham Hemson, Laurence G. Frank, Philip Stander, Ludwig Siefert, Margaret Driciru, Paul J. Funston, Kathy A. Alexander, Katherine C. Prager, Gus Mills, David E. Wildt, Mitch E. Bush, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Mitochondrial DNA Haplogroups Influence AIDS Progression, Sher L. Hendrickson, Holli Hutcheson, Eduardo Ruiz-Pesini, Jason C. Poole, J. A. Lautenberger, Efe Sezgin, Lawrence Kingsley, James J. Goedert, David Vlahov, Sharyne Donfield, Douglas C. Wallace, Stephen J. O'Brien
Biology Faculty Articles

Inter-Species Hybridization Among Neotropical Cats of the Genus Leopardus, and Evidence for an Introgressive Hybrid Zone Between L. geoffroyi and L. tigrinus in Southern Brazil, T. C. Trigo, T. R. O. Freitas, G. Kunzler, L. Cardoso, C. R. Silva, Warren E. Johnson, Stephen J. O'Brien, Sandro L. Bonatto, Eduardo Eizirik
Biology Faculty Articles

Host Genetic Influences on Highly Active Antiretroviral Therapy Efficacy and AIDS-Free Survival, Sher L. Hendrickson, Lisa Jacobson, George W. Nelson, John Phair, J. A. Lautenberger, Randall C. Johnson, Lawrence Kingsley, Joseph Margolick, Roger Detels, James J. Goedert, Stephen J. O'Brien
Biology Faculty Articles

Epizootiology and Management of Feline Leukemia Virus in the Florida Puma, Mark W. Cunningham, Meredith Brown, David B. Shindle, Scott P. Terrell, Kathleen A. Hayes, Bambi C. Ferree, R. T. McBride, Emmett L. Blankenship, Deborah Jansen, S. Citino, Melody E. Roelke, Richard A. Kiltie, Jennifer L. Troyer, Stephen J. O'Brien
Biology Faculty Articles

GSTM1 and GSTT1 Gene Deletions and the Risk for Nasopharyngeal Carcinoma in Han Chinese, Xiuchan Guo, Stephen J. O'Brien, Yi Zeng, Cheryl Winkler
Biology Faculty Articles

Mitochondrial Genomes Reveal an Explosive Radiation of Extinct and Extant Bears near the Miocene-Pliocene Boundary, Johannes Krause, Tina Unger, Aline Nocon, Anna-Sapfo Malaspinas, Sergios-Orestis Kolokotronis, Mathias Stiller, Leopoldo Soibelzon, Helen Spriggs, Paul H. Dear, Adrian W. Briggs, Sarah C. E. Bray, Stephen J. O'Brien, Gernot Rabeder, Paul Matheus, Alan Cooper, Montgomery Slatkin, Svante Paabo, Michael Hofreiter
Biology Faculty Articles

Sequences, Annotation and Single Nucleotide Polymorphism of the Major Histocompatibility Complex in the Domestic Cat, Naoya Yuhki, James C. Mullikin, Thomas W. Beck, Robert M. Stephens, Stephen J. O'Brien
Biology Faculty Articles

State of Cat Genomics, Stephen J. O'Brien, Warren E. Johnson, Carlos A. Driscoll, J. U. Pontius, Jill Pecon-Slattery, Marilyn Menotti-Raymond
Biology Faculty Articles

Evaluation of IL10, IL19 and IL20 Gene Polymorphisms and Chronic Hepatitis B Infection Outcome, Ann L. Truelove, T. K. Oleksyk, Sadeep Shrestha, Chloe L. Thio, James J. Goedert, Sharyne Donfield, Gregory D. Kirk, David L. Thomas, Stephen J. O'Brien, Michael W. Smith
Biology Faculty Articles

Detecting AIDS Restriction Genes: from Candidate Genes to Genome-Wide Association Discovery, Holli Hutcheson, J. A. Lautenberger, G. W. Nelson, J. U. Pontius, Bailey Kessing, Cheryl Winkler, M. W. Smith, R. Johnson, R. Stephens, John Phair, James J. Goedert, Sharyne Donfield, Stephen J. O'Brien
Biology Faculty Articles

The Platypus Genome Unraveled, Stephen J. O'Brien
Biology Faculty Articles

Exposure to Disease Agents in the Endangered Iberian Lynx (Lynx pardinus), Melody E. Roelke, Warren E. Johnson, Javier Millan, Francisco Palomares, Eloy Revilla, Alejandro Rodriguez, Javier Calzada, Pablo Ferreras, Luis Leon-Vizcaino, Miguel Delibes, Stephen J. O'Brien
Biology Faculty Articles

The Ancestral Carnivore Karyotype (2n = 38) Lives Today in Ringtails, William G. Nash, Joan C. Menninger, Hesed M. Padilla-Nash, Gary Stone, Polina L. Perelman, Stephen J. O'Brien
Biology Faculty Articles

Evolution of Feline Immunodeficiency Virus in Felidae: Implications for Human Health and Wildlife Ecology, Jill Pecon-Slattery, Jennifer L. Troyer, Warren E. Johnson, Stephen J. O'Brien
Biology Faculty Articles

FIV Cross-Species Transmission: An Evolutionary Prospective, Jennifer L. Troyer, Sue VandeWoude, Jill Pecon-Slattery, Carl McIntosh, Sam Franklin, Agostinho Antunes, Warren E. Johnson, Stephen J. O'Brien
Biology Faculty Articles

Estimation of the Bottleneck Size in Florida Panthers, Melanie Culver, P. W. Hendrick, K. Murphy, Stephen J. O'Brien, M. G. Hornocker
Biology Faculty Articles

Subspecies Genetic Assignments of Worldwide Captive Tigers Increase Conservation Value of Captive Populations, Shu-Jin Luo, Warren E. Johnson, Janice S. Martenson, Agostinho Antunes, Paolo Martelli, Olga Uphyrkina, Kathy Traylor-Holzer, James L. D. Smith, Stephen J. O'Brien
Biology Faculty Articles

The Adaptive Evolution of the Mammalian Mitochondrial Genome, Rute R. da Fonseca, Warren E. Johnson, Stephen J. O'Brien, Maria J. Ramos, Agostinho Antunes
Biology Faculty Articles

Phylogenomics of the Dog and Fox Family (Canidae, Carnivora) Revealed by Chromosome Painting, A. S. Graphodatsky, Polina L. Perelman, Natalya V. Sokolovskaya, Violetta R. Beklemisheva, Natalya V. Serdukova, Gauthier Dobigny, Stephen J. O'Brien, Malcolm A. Ferguson-Smith, Fengtang Yang
Biology Faculty Articles

Functions, Structure, and Read-Through Alternative Splicing of Feline APOBEC3 Genes, Carsten Munk, Thomas W. Beck, Jorg Zielonka, Agnes Hotz-Wagenblatt, Sarah Chareza, Marion Battenberg, Jens Thielebein, Klaus Cichutek, Ignacio G. Bravo, Stephen J. O'Brien, Martin Lochelt, Naoya Yuhki
Biology Faculty Articles

Identifying Selected Regions from Heterozygosity and Divergence Using a Light-Coverage Genomic Dataset from Two Human Populations, T. K. Oleksyk, Kai Zhao, Francisco M. De La Vega, Dennis A. Gilbert, Stephen J. O'Brien, Michael W. Smith
Biology Faculty Articles

Genomic Organization, Sequence Divergence, and Recombination of Feline Immunodeficiency Virus from Lions in the Wild, Jill Pecon-Slattery, Carrie L. McCracken, Jennifer L. Troyer, Sue VandeWoude, Melody E. Roelke, Kerry Sondgeroth, Christiaan Winterbach, Stephen J. O'Brien
Biology Faculty Articles

Genetic Characterization of Feline Leukemia Virus from Florida Panthers, Meredith Brown, Mark W. Cunningham, Alfred L. Roca, Jennifer L. Troyer, Warren E. Johnson, Stephen J. O'Brien
Biology Faculty Articles

A Population-Based Study to Investigate Host Genetic Factors Associated with Hepatitis B Infection and Pathogenesis in the Chinese Population, Zheng Zheng, Li Guan, Ping An, Shan Sun, Stephen J. O'Brien, Cheryl Winkler, HBV Study Consortium
Biology Faculty Articles

Patterns of Molecular Genetic Variation Among Cat Breeds, Marilyn Menotti-Raymond, Victor A. David, Solveig M. Pflueger, Kerstin Lindblad-Toh, Claire M. Wade, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Ecological and Biogeographical Inferences on Two Sympatric and Enigmatic Andean Cat Species Using Genetic Identification of Faecal Samples, Constanza Napolitano, Magdalena Bennett, Warren E. Johnson, Stephen J. O'Brien, Pablo A. Marquet, Ivan Barria, Elie Poulin, Agustin Iriarte
Biology Faculty Articles

Molecular Genetic Insights on Cheetah (Acinonyx jubatus) Ecology and Conservation in Namibia, L. Marker, A. J. Pearks Wilkerson, Ronald J. Sarno, Janice S. Martenson, Christian Breitenmoser-Wursten, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Designing and Optimizing Comparative Anchor Primers for Comparative Gene Mapping and Phylogenetic Inference, William J. Murphy, Stephen J. O'Brien
Biology Faculty Articles

Initial Sequence and Comparative Analysis of the Cat Genome, J. U. Pontius, James C. Mullikin, Douglas R. Smith, Agencourt Bioscience Corporation, Kerstin Lindblad-Toh, Sante Gnerre, Michele Clamp, Jean Chang, R. Stephens, Beena A. Neelam, Natalia Volfovsky, Alejandro A. Schaffer, R. Agarwala, Kristina Narfstrom, William J. Murphy, Urs Giger, Alfred L. Roca, Agostinho Antunes, Marilyn Menotti-Raymond, Naoya Yuhki, Jill Pecon-Slattery, Warren E. Johnson, Guillaume Bourque, Glenn Tesler, NISC Comparative Sequencing Program, Stephen J. O'Brien
Biology Faculty Articles

A Mutation in KIR3DS1 That Results in Truncation and Lack of Cell Surface Expression, Maureen P. Martin, Veronique Pascal, Meredith Yeager, John Phair, Gregory D. Kirk, Keith Hoots, Stephen J. O'Brien, Stephen K. Anderson, Mary Carrington
Biology Faculty Articles

Four Independent Mutations in the Feline Fibroblast Growth Factor 5 Gene Determine the Long-Haired Phenotype in Domestic Cats, J. S. Kehler, Victor A. David, Alejandro A. Schaffer, Kristina Bajema, Eduardo Eizirik, David K. Ryugo, Steven S. Hannah, Stephen J. O'Brien, Marilyn Menotti-Raymond
Biology Faculty Articles

Validation of a Short Tandem Repeat Multiplex Typing System for Genetic Individualization of Domestic Cat Samples, Nikia Coomber, Victor A. David, Stephen J. O'Brien, Marilyn Menotti-Raymond
Biology Faculty Articles

The Adequacy of Morphology for Reconstructing the Early History of Placental Mammals, Mark S. Springer, Angela Burk-Herrick, Robert Meredith, Eduardo Eizirik, Emma C. Teeling, Stephen J. O'Brien, William J. Murphy
Biology Faculty Articles

Gene Conversion Between Mammalian CCR2 and CCR5 Chemokine Receptor Genes: A Potential Mechanism for Receptor Dimerization, Nuria Vazquez-Salat, Naoya Yuhki, Thomas W. Beck, Stephen J. O'Brien, William J. Murphy
Biology Faculty Articles

Regulatory Polymorphisms in the Cyclophilin A Gene, PPIA, Accelerate Progression to AIDS, Ping An, Li Hua Wang, Holli Hutcheson-Dilks, George Nelson, Sharyne Donfield, James J. Goedert, Charles Rinaldo, Susan Buchbinder, Gregory D. Kirk, Stephen J. O'Brien, Cheryl Winkler
Biology Faculty Articles

Primate TNF Promoters Reveal Markers of Phylogeny and Evolution of Innate Immunity, Andres Baena, Alan R. Mootnick, James V. Falvo, Alla V. Tsytsykova, Filipa Ligeiro, Ousmane M. Diop, Claudia Brieva, Pascal Gagneux, Stephen J. O'Brien, Oliver A. Ryder, Anne E. Goldfeld
Biology Faculty Articles

A Family Matter: Conclusive Resolution of the Taxonomic Position of the Long-Fingered Bats, Miniopterus, Cassandra M. Miller-Butterworth, William J. Murphy, Stephen J. O'Brien
Biology Faculty Articles

Mitochondrial Introgressions into the Nuclear Genome of the Domestic Cat, Agostinho Antunes, J. U. Pontius, Maria J. Ramos, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Development of Y Chromosome Intraspecific Polymorphic Markers in the Felidae, Shu-Jin Luo, Warren E. Johnson, Victor A. David, Marilyn Menotti-Raymond, R. Stanyon, Qing-xiu Cai, Thomas W. Beck, Naoya Yuhki, Jill Pecon-Slattery, James L. D. Smith, Stephen J. O'Brien
Biology Faculty Articles

Comparative Genomic Structure of Human, Dog, and Cat MHC: HLA, DLA, and FLA, Naoya Yuhki, Thomas W. Beck, R. Stephens, Beena A. Neelam, Stephen J. O'Brien
Biology Faculty Articles

Genome Annotation Resource Fields- GARFIELD: A Genome Browser for Felis catus, J. U. Pontius, Stephen J. O'Brien
Biology Faculty Articles

The Evolution of CATS, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Cyto-Nuclear Genomic Dissociation and the African Elephant Species Question, Alfred L. Roca, Nicholas Georgiadis, Stephen J. O'Brien
Biology Faculty Articles

The Near Eastern Origin of Cat Domestication, Carlos A. Driscoll, Marilyn Menotti-Raymond, Alfred L. Roca, Karsten Hupe, Warren E. Johnson, Eli Geffen, Eric H. Harley, M. Delibes, Dominique Pontier, Andrew C. Kitchener, Nobuyuki Yamaguchi, Stephen J. O'Brien, David W. Macdonald
Biology Faculty Articles

Innate Partnership of HLA-B and KIR3DL1 Subtypes Against HIV-1, Maureen P. Martin, Ying Qi, Xiaojiang Gao, Eriko Yamada, Jeffrey N. Martin, Florencia Fereyra, Sara Colombo, Elizabeth E. Brown, W. Lesley Shupert, John Phair, James J. Goedert, Susan Buchbinder, Gregory D. Kirk, Amalio Telenti, Mark Connors, Stephen J. O'Brien, Bruce D. Walker, Peter Parham, Steven G. Deeks, Daniel W. McVicar, Mary Carrington
Biology Faculty Articles

Clouded Leopard Phylogeny Revisited: Support for Species Recognition and Population Division Between Borneo and Sumatra, Andreas Wilting, Valerie A. Buckley-Beason, Heike Feldhaar, Jurgen Gadau, Stephen J. O'Brien, K. Eduard Linsenmair
Biology Faculty Articles

Mutation in CEP290 Discovered for Cat Model of Human Retinal Degeneration, Marilyn Menotti-Raymond, Victor A. David, Alejandro A. Schaffer, R. Stephens, David Wells, Rajendra Kumar-Singh, Stephen J. O'Brien, Kristina Narfstrom
Biology Faculty Articles

Evolution of the Male-Determining Gene SRY Within the Cat Family Felidae, V. King, P. N. Goodfellow, A. J. Pearks Wilkerson, Warren E. Johnson, Stephen J. O'Brien, Jill Pecon-Slattery
Biology Faculty Articles

Isolation and Characterization of Microsatellite Markers in Pangolins (Mammalia, Pholidota, Manis spp.), Shu-Jin Luo, Qing-xiu Cai, Victor A. David, Li Zhang, Paolo Martelli, Norman T-L. Lim, Nuno Ferrand, Shih-Chien Chin, Philippe Gaubert, Maria J. Ramos, Stephen J. O'Brien, Agostinho Antunes, Warren E. Johnson
Biology Faculty Articles

Q&A: Stephen J. O'Brien, Stephen J. O'Brien
Biology Faculty Articles

A 1.5-Mb-Resolution Radiation Hybrid Map of the Cat Genome and Comparative Analysis with the Canine and Human Genomes, William J. Murphy, Brian Davis, Victor A. David, R. Agarwala, Alejandro A. Schaffer, A. J. Pearks Wilkerson, Beena A. Neelam, Stephen J. O'Brien, Marilyn Menotti-Raymond
Biology Faculty Articles

A little revolution, John Rennie, Richard Dawkins, Lawrence M. Krauss, Stephen J. O'Brien, Kevin E. Trenberth, Alan Weisman
Biology Faculty Articles

Polymorphisms of CUL5 are Associated with CD4+ T Cell Loss in HIV-1 Infected Individuals, Ping An, Priya Duggal, Li Hua Wang, Stephen J. O'Brien, Sharyne Donfield, James J. Goedert, John Phair, Susan Buchbinder, Gregory D. Kirk, Cheryl Winkler
Biology Faculty Articles

Elevated Male European and Female African Contributions to the Genomes of African American Individuals, Joanne M. Lind, Holli Hutcheson-Dilks, Scott M. Williams, Jason H. Moore, Myron Essex, Eduardo Ruiz-Pesini, Douglas C. Wallace, Sarah A. Tishkoff, Stephen J. O'Brien, Michael W. Smith
Biology Faculty Articles

HLA-B Bw4 Alleles and HIV-1 Transmission in Heterosexual Couples, Tania M. Welzel, Xiaojiang Gao, Ruth M. Pfeiffer, Maureen P. Martin, Stephen J. O'Brien, Mary Carrington, Thomas R. O'Brien
Biology Faculty Articles

Genetic Protection against Hepatitis B Virus Conferred by CCR5Δ32: Evidence that CCR5 Contributes to Viral Persistence, Chloe L. Thio, Jacquie Astemborski, Arman A. Bashirova, Timothy L. Mosbruger, Spencer Greer, Mallory D. Witt, James J. Goedert, Margaret Hilgartner, Audrey Majesk, Stephen J. O'Brien, David L. Thomas, Mary Carrington
Biology Faculty Articles

A Homozygous Single-Base Deletion in MLPH Causes the Dilute Coat Color Phenotype in the Domestic Cat, Yasuko Ishida, Victor A. David, Eduardo Eizirik, Alejandro A. Schaffer, Beena A. Neelam, Melody E. Roelke, Steven S. Hannah, Stephen J. O'Brien, Marilyn Menotti-Raymond
Biology Faculty Articles

Molecular Evidence for Species-Level Distinctions in Clouded Leopards, Valerie A. Buckley-Beason, Warren E. Johnson, William G. Nash, Roscoe Stanyon, Joan C. Menninger, Carlos A. Driscoll, JoGayle Howard, Mitch E. Bush, J. E. Page, Melody E. Roelke, Gary Stone, Paolo Martelli, Ci Wen, Lin Ling, Ratna K. Duraisingam, Phan V. Lam, Stephen J. O'Brien
Biology Faculty Articles

Status of the World's Smallest Mammal, the Bumble-Bee Bat Craseonycteris thonglongyai, in Myanmar, Maria Joao Ramos Pereira, Hugo Rebelo, Emma C. Teeling, Stephen J. O'Brien, Iain Mackie, Si Si Hla Bu, Khin Maung Swe, Paul Bates
Biology Faculty Articles

An ∼140-kb Deletion Associated with Feline Spinal Muscular Atrophy Implies an Essential LIX1 Function for Motor Neuron Survival, John C. Fyfe, Marilyn Menotti-Raymond, Victor A. David, Lars Brichta, Alejandro A. Schaffer, R. Agarwala, William J. Murphy, William J. Wedemeyer, Brittany L. Gregory, Bethany G. Buzzell, Meghan C. Drummond, Brunhilde Wirth, Stephen J. O'Brien
Biology Faculty Articles

Plagues and Adaptation: Lessons from the Felidae Models for SARS and AIDS, Stephen J. O'Brien, Jennifer L. Troyer, Melody E. Roelke, L. Marker, Jill Pecon-Slattery
Biology Faculty Articles

A Nuclear DNA Phylogeny of the Woolly Mammoth (Mammuthus primigenius), Cristian Capelli, Ross D. E. MacPhee, Alfred L. Roca, Francesca Brisighelli, Nicholas Georgiadis, Stephen J. O'Brien, Alex D. Greenwood
Biology Faculty Articles

KIR/HLA Pleiotropism: Protection against Both HIV and Opportunistic Infections, Ying Qi, Maureen P. Martin, Xiaojiang Gao, Lisa Jacobson, James J. Goedert, Susan Buchbinder, Gregory D. Kirk, Stephen J. O'Brien, John Trowsdale, Mary Carrington
Biology Faculty Articles

Genetic Variation in the CCL18-CCL3-CCL4 Chemokine Gene Cluster Influences HIV Type 1 Transmission and AIDS Disease Progression, William Modi, J. A. Lautenberger, Ping An, Kevin Scott, James J. Goedert, Gregory D. Kirk, Susan Buchbinder, John Phair, Sharyne Donfield, Stephen J. O'Brien, Cheryl Winkler
Biology Faculty Articles

Using Mutual Information to Measure the Impact of Multiple Genetic Factors on AIDS, George W. Nelson, Stephen J. O'Brien
Biology Faculty Articles

Consistent Effects of TSG101 Genetic Variability on Multiple Outcomes of Exposure to Human Immunodeficiency Virus Type 1, Arman A. Bashirova, Gabriela Bleiber, Ying Qi, Holli Hutcheson, Traci Yamashita, Randall C. Johnson, Jie Cheng, Galit Alter, James J. Goedert, Susan Buchbinder, Keith Hoots, David Vlahov, Margaret May, Frank Maldarelli, Lisa Jacobson, Stephen J. O'Brien, Amalio Telenti, Mary Carrington
Biology Faculty Articles

Genetic Factors Leading to Chronic Epstein–Barr Virus Infection and Nasopharyngeal Carcinoma in South East China: Study Design, Methods and Feasibility, Xiu Chan Guo, Kevin Scott, Yan Liu, Michael Dean, Victor David, George W. Nelson, Randall C. Johnson, Holli H. Dilks, J. A. Lautenberger, Bailey Kessing, Janice S. Martenson, Li Guan, Shan Sun, Hong Deng, Yuming Zheng, Guy de The, Jian Liao, Yi Zeng, Stephen J. O'Brien, Cheryl Winkler
Biology Faculty Articles

Diversity and Duplication of DQB and DRB-Like Genes of the MHC in Baleen Whales (Suborder: Mysticeti), C. S. Baker, M. D. Vant, M. L. Dalebout, G. M. Lento, Stephen J. O'Brien, Naoya Yuhki
Biology Faculty Articles

T-Lymphocyte Profiles in FIV-Infected Wild Lions and Pumas Reveal CD4 Depletion, Melody E. Roelke, Jill Pecon-Slattery, S. Taylor, S. Citino, E. Brown, Craig Packer, Sue VandeWoude, Stephen J. O'Brien
Biology Faculty Articles

Diversity of MICA and Linkage Disequilibrium with HLA-B in Two North American Populations, Xiaojiang Gao, Richard M. Single, Peter Karacki, Darlene Marti, Stephen J. O'Brien, Mary Carrington
Biology Faculty Articles

Searching for Signals of Evolutionary Selection in 168 Genes Related to Immune Function, Emily C. Walsh, Pardis Sabeti, Holli Hutcheson, Ben Fry, Stephen F. Schaffner, Paul I. W. de Bakker, Patrick Varilly, Alejandro A. Palma, Jessica Roy, Richard Cooper, Cheryl Winkler, Yi Zeng, Guy de The, Eric S. Lander, Stephen J. O'Brien, David Altshuler
Biology Faculty Articles

Evolutionary Analysis of a Large mtDNA Translocation (numt) into the Nuclear Genome of the Panthera Genus Species, Jae-Heup Kim, Agostinho Antunes, Shu-Jin Luo, Joan C. Menninger, William G. Nash, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

A Variant of the Gene Encoding Leukotriene A4 Hydrolase Confers Ethnicity-Specific Risk of Myocardial Infarction, Anna Helgadottir, Andrei Manolescu, Agnar Helgason, Gudmar Thorleifsson, Unnur Thorsteinsdottir, Daniel F. Gudbjartsson, Solveig Gretarsdottir, Kristinn P. Magnusson, Gudmundur Gudmundsson, Andrew Hicks, Thorlakur Jonsson, Struan F. A. Grant, Jesus Sainz, Stephen J. O'Brien, Sigurlaug Sveinbjornsdottir, Einar M. Valdimarsson, Stefan E. Matthiasson, Allan I. Levey, Jerome L. Abramson, Murdach P. Reilly, Viola Vaccarino, Megan L. Wolfe, Vilmundur Gudnason, Arshed A. Quyyumi, Eric J. Topol, Daniel J. Rader, Gudmundur Thorgeirsson, Jeffrey R. Gulcher, Hakon Hakonarson, Augustine Kong, Kari Stefansson
Biology Faculty Articles

Behavioral Risk Exposure and Host Genetics of Susceptibility to HIV-1 Infection, Sadeep Shrestha, Steffanie A. Strathdee, Noya Galai, T. K. Oleksyk, M. Daniele Fallin, Shruti Mehta, Daniel Schaid, David Vlahov, Stephen J. O'Brien, Matthew W. Smith
Biology Faculty Articles

Proceedings in Phylogeography and Genetic Ancestry of Tigers (Panthera tigris) in China and Across Their Range, Shu-Jin Luo, Jae-Heup Kim, Warren E. Johnson, Dale G. Miquelle, Huang Shi-Qiang, Wen-Shi Pan, James L. D. Smith, Stephen J. O'Brien
Biology Faculty Articles

The Late Miocene Radiation of Modern Felidae: A Genetic Assessment, Warren E. Johnson, Eduardo Eizirik, Jill Pecon-Slattery, William J. Murphy, Agostinho Antunes, Emma C. Teeling, Stephen J. O'Brien
Biology Faculty Articles

Haplotype Analysis of the SDF-1 (CXCL12) Gene in a Longitudinal HIV-1/AIDS Cohort Study, William Modi, K. Scott, James J. Goedert, David Vlahov, Susan Buchbinder, Roger Detels, Sharyne Donfield, Stephen J. O'Brien, Cheryl Winkler
Biology Faculty Articles

Genomic Inferences from Afrotheria and the Evolution of Elephants, Alfred L. Roca, Stephen J. O'Brien
Biology Faculty Articles

AIDS Restriction HLA Allotypes Target Distinct Intervals of HIV-1 Pathogenesis, Xiaojiang Gao, Arman A. Bashirova, Astrid K. N. Iversen, John Phair, James J. Goedert, Susan Buchbinder, Keith Hoots, David Vlahov, Marcus Altfeld, Stephen J. O'Brien, Mary Carrington
Biology Faculty Articles

Genomes and Evolution: The Power of Comparative Genomics, Stephen J. O'Brien, Claire M. Fraser
Biology Faculty Articles

Pet Project, Stephen J. O'Brien
Biology Faculty Articles

The Case for Selection at CCR5-Δ32, Pardis Sabeti, Emily C. Walsh, Stephen F. Schaffner, Patrick Varilly, Ben Fry, Holli Hutcheson, Mike Cullen, Tarjei S. Mikkelsen, Jessica Roy, Nick Patterson, Richard Cooper, David Reich, David Altshuler, Stephen J. O'Brien, Eric S. Lander
Biology Faculty Articles

Stromal Cell–Derived Factor–1 Genotype, Coreceptor Tropism, and HIV Type 1 Disease Progression, Eric S. Daar, Henry S. Lynn, Sharyne Donfield, Alice Lail, Stephen J. O'Brien, Wei Huang, Cheryl Winkler
Biology Faculty Articles

A Rhesus Macaque Radiation Hybrid Map and Comparative Analysis with the Human Genome, William J. Murphy, R. Agarwala, Alejandro A. Schaffer, Robert M. Stephens, Clarence Smith Jr., Nicole J. Crumpler, Victor A. David, Stephen J. O'Brien
Biology Faculty Articles

Big Cat Genomics, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

An STR Forensic Typing System for Genetic Individualization of Domestic Cat (Felis catus) Samples, J. M. Butler, Leslie Wachter, Marilyn Menotti-Raymond, Stephen J. O'Brien, V. A. David
Biology Faculty Articles

Mapping by Admixture Linkage Disequilibrium: Advances, Limitations and Guidelines, Michael W. Smith, Stephen J. O'Brien
Biology Faculty Articles

Tyrosinase and Tyrosinase Related Protein 1 Alleles Specify Domestic Cat Coat Color Phenotypes of the albino and brown Loci, A. Schmidt-Kunzel, Eduardo Eizirik, Stephen J. O'Brien, Marilyn Menotti-Raymond
Biology Faculty Articles

Seroprevalence and Genomic Divergence of Circulating Strains of Feline Immunodeficiency Virus Among Felidae and Hyaenidae Species, Jennifer L. Troyer, Jill Pecon-Slattery, Melody E. Roelke, Warren E. Johnson, Sue VandeWoude, Nuria Vazquez-Salat, Meredith Brown, Laurence Frank, Rosie Woodroffe, Christiaan Winterbach, Hanlie Winterbach, Graham Hemson, Mitchell Bush, Kathleen A. Alexander, Eloy Revilla, Stephen J. O'Brien
Biology Faculty Articles

Mannose Binding Lectin Genotypes Influence Recovery from Hepatitis B Virus Infection, Chloe L. Thio, Timothy L. Mosbruger, Jacquie Astemborski, Spencer Greer, Gregory D. Kirk, Stephen J. O'Brien, David L. Thomas
Biology Faculty Articles

Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps, William J. Murphy, Denis M. Larkin, Annelie Everts-van der Wind, Guillaume Bourque, Glenn Tesler, Loretta Auvil, Jonathan E. Beever, Bhanu P. Chowdhary, Francis Galibert, Lisa Gatzke, Christophe Hitte, Stacey N. Meyers, Denis Milan, Elaine A. Ostrander, Greg Pape, Heidi G. Parker, Terje Raudsepp, Margarita B. Rogatcheva, Lawrence B. Schook, Loren C. Skow, Michael Welge, James E. Womack, Stephen J. O'Brien, Pavel Pevzner, Harris A. Lewin
Biology Faculty Articles

Single Nucleotide Polymorphisms and Haplotypes in the IL10 Region Associated with HCV Clearance, T. K. Oleksyk, Chloe L. Thio, Ann L. Truelove, James J. Goedert, Sharyne Donfield, Gregory D. Kirk, D. L. Thomas, Stephen J. O'Brien, M. W. Smith
Biology Faculty Articles

The Linkage Disequilibrium Maps of Three Human Chromosomes Across Four Populations Reflect Their Demographic History and a Common Underlying Recombination Pattern, Francisco M. De La Vega, Hadar Isaac, Andrew Collins, Charles R. Scafe, Bjarni V. Halldorsson, Xiaoping Su, Ross A. Lippert, Yu Wang, Marion Laig-Webster, Ryan T. Koehler, Janet S. Ziegle, Lewis T. Wogan, Junko F. Stevens, Kyle M. Leinen, Sheri J. Olson, Karl J. Guegler, Xiaoqing You, Lily H. Xu, Heinz G. Hemken, Francis Kalush, Mitsuo Itakura, Yi Zheng, Guy de The, Stephen J. O'Brien, Andrew G. Clark, Sorin Istrail, Michael W. Hunkapiller, Eugene G. Spier, Dennis A. Gilbert
Biology Faculty Articles

Insertional Polymorphisms of Endogenous Feline Leukemia Viruses, Alfred L. Roca, William G. Nash, Joan C. Menninger, William J. Murphy, Stephen J. O'Brien
Biology Faculty Articles

The Effect of RANTES Chemokine Genetic Variants on Early HIV-1 Plasma RNA Among African American Injection Drug Users, Priya Duggal, Cheryl Winkler, Ping An, Xiao-Fang Yu, Homayoon Farzadegan, Stephen J. O'Brien, T. H. Beaty, David Vlahov
Biology Faculty Articles

Inherited Motor Neuron Disease in Domestic Cats: A Model of Spinal Muscular Atrophy, Qianchuan He, Charles Lowrie, G. Diane Shelton, Rudy J. Castellani, Marilyn Menotti-Raymond, William J. Murphy, Stephen J. O'Brien, William Swanson, John C. Fyfe
Biology Faculty Articles

An STR forensic typing system for genetic individualization of domestic cat (Felis catus) samples, Marilyn A. Menotti-Raymond, Victor A. David, Leslie L. Wachter, John M. Butler, Stephen J. O'Brien
Biology Faculty Articles

Cytonuclear Genomic Dissociation in African Elephant Species, Alfred L. Roca, Nicholas Georgiadis, Stephen J. O'Brien
Biology Faculty Articles

The Feline Major Histocompatibility Complex is Rearranged by an Inversion with a Breakpoint in the Distal Class I Region, Thomas W. Beck, Joan C. Menninger, William J. Murphy, William G. Nash, Stephen J. O'Brien, Naoya Yuhki
Biology Faculty Articles

A Molecular Phylogeny for Bats Illuminates Biogeography and the Fossil Record, Emma C. Teeling, Mark S. Springer, Ole Madsen, Paul Bates, Stephen J. O'Brien, William J. Murphy
Biology Faculty Articles

Phylogeography and Genetic Ancestry of Tigers (Panthera tigris), Shu-Jin Luo, Jae-Heup Kim, Warren E. Johnson, Joelle van der Walt, Janice S. Martenson, Naoya Yuhki, Dale Miquelle, Olga Uphyrkina, John M. Goodrich, Howard Quigley, R. Tilson, Gerald Brady, Paolo Martelli, Vellayan Subramaniam, Charles McDougal, Sun Hean, Shi-Qiang Huang, Wenshi Pan, Ullas K. Karanth, Melvin Sunquist, James L. D. Smith, Stephen J. O'Brien
Biology Faculty Articles

Development and Characterization of Microsatellite Loci in the Endangered Oyster Mussel Epioblasma capsaeformis (Bivalvia: Unionidae), Jess W. Jones, Melanie Culver, Victor David, Jennifer Struthers, Nathan A. Johnson, Richard J. Neves, Stephen J. O'Brien, Eric M. Hallerman
Biology Faculty Articles

Mammalian Phylogenomics Comes of Age, William J. Murphy, Pavel Pevzner, Stephen J. O'Brien
Biology Faculty Articles

Dominant Effects of CCR2-CCR5 Haplotypes in HIV-1 Disease Progression, Cheryl Winkler, Houria Hendel, Mary Carrington, Michael W. Smith, George W. Nelson, Stephen J. O'Brien, John Phair, David Vlahov, Lisa Jacobson, Jay Rappaport, Alexandre Vasilescu, Sebastien Berlin-Maghit, Ping An, Wei Lu, Jean-Marie Andrieu, Francois Schachter, Amu Therwath, Jean-Francois Zagury
Biology Faculty Articles

Phylogenetic Assessment of Introns and SINEs Within the Y Chromosome Using the Cat Family Felidae as a Species Tree, Jill Pecon-Slattery, A. J. Pearks Wilkerson, William J. Murphy, Stephen J. O'Brien
Biology Faculty Articles

Association of DC-SIGN Promoter Polymorphism with Increased Risk for Parenteral, but Not Mucosal, Acquisition of Human Immunodeficiency Virus Type 1 Infection, Maureen P. Martin, Michael M. Lederman, Holli B. Hutcheson, James J. Goedert, George W. Nelson, Yvette van Kooyk, Roger Detels, Susan Buchbinder, Keith Hoots, David Vlahov, Stephen J. O'Brien, Mary Carrington
Biology Faculty Articles

Cats, Stephen J. O'Brien
Biology Faculty Articles

Lack of Associations Between HLA Class II Alleles and Resistance to HIV-1 Infection Among White, Non-Hispanic Homosexual Men, Chenglong Liu, Mary Carrington, Richard A. Kaslow, Xiaojiang Gao, Charles Rinaldo, Lisa Jacobson, Joseph Margolick, John Phair, Stephen J. O'Brien, Roger Detels
Biology Faculty Articles

APOBEC3G Genetic Variants and Their Influence on the Progression to AIDS, Ping An, Gabriela Bleiber, Priya Duggal, George Nelson, Margaret May, Bastien Mangeat, Irene Alobwede, Didier Trono, David Vlahov, Sharyne Donfield, James J. Goedert, John Phair, Susan Buchbinder, Stephen J. O'Brien, Amalio Telenti, Cheryl Winkler
Biology Faculty Articles

Cytotoxic T-Lymphocyte Antigen 4 Gene and Recovery from Hepatitis B Virus Infection, Chloe L. Thio, Timothy L. Mosbruger, Richard A. Kaslow, Christopher L. Karp, Steffanie A. Strathdee, David Vlahov, Stephen J. O'Brien, Jacquie Astemborski, David L. Thomas
Biology Faculty Articles

Adam's Curse: A Future Without Men, Stephen J. O'Brien
Biology Faculty Proceedings, Presentations, Speeches, Lectures

HLA and NK Cell Inhibitory Receptor Genes in Resolving Hepatitis C Virus Infection, Salim I. Khakoo, Chloe L. Thio, Maureen P. Martin, Collin R. Brooks, Xiaojiang Gao, Jacquie Astemborski, Jie Cheng, James J. Goedert, David Vlahov, Margaret Hilgartner, Steven Cox, Ann-Margeret Little, Graeme J. Alexander, Matthew E. Cramp, Stephen J. O'Brien, William M. C. Rosenberg, David L. Thomas, Mary Carrington
Biology Faculty Articles

An Analysis of Tumor Necrosis Factor α Gene Polymorphisms and Haplotypes with Natural Clearance of Hepatitis C Virus Infection, Chloe L. Thio, James J. Goedert, Timothy L. Mosbruger, David Vlahov, Steffanie A. Strathdee, Stephen J. O'Brien, Jacquie Astemborski, D. L. Thomas
Biology Faculty Articles

MICA and Recovery from Hepatitis C Virus and Hepatitis B Virus Infections, Peter Karacki, Xiaojiang Gao, Chloe L. Thio, D. L. Thomas, James J. Goedert, David Vlahov, Richard A. Kaslow, Steffanie A. Strathdee, Margaret Hilgartner, Stephen J. O'Brien, Mary Carrington
Biology Faculty Articles

Evaluating Association and Transmission of Eight Inflammatory Genes with Viliuisk Encephalomyelitis Susceptibility, T. K. Oleksyk, L. G. Goldfarb, T. Sivtseva, A. P. Danilova, V. L. Osakovsky, S. Shrestha, Stephen J. O'Brien, M. W. Smith
Biology Faculty Articles

Human Genes That Limit AIDS, Stephen J. O'Brien, George W. Nelson
Biology Faculty Articles

Multiple Paternity and Reproductive Tactics of Free-Ranging American Minks, Mustela vison, Nobuyuki Yamaguchi, Ronald J. Sarno, Warren E. Johnson, Stephen J. O'Brien, D. W. MacDonald
Biology Faculty Articles

Mesozoic Origin for West Indian Insectivores, Alfred L. Roca, Gila Kahila Bar-Gal, Eduardo Eizirik, Kristofer M. Helgen, Roberto Maria, Mark S. Springer, Stephen J. O'Brien, William J. Murphy
Biology Faculty Articles

Detecting the Vanishing Populations of the Highly Endangered Darwin's Fox, Pseudalopex fulvipes, Carles Vila, Jennifer A. Leonard, J. A. Iriarte, Stephen J. O'Brien, Warren E. Johnson, Robert K. Wayne
Biology Faculty Articles

A High-Density Admixture Map for Disease Gene Discovery in African Americans, MIchael W. Smith, Nick Patterson, J. A. Lautenberger, Ann L. Truelove, Gavin J. McDonald, Alicja Waliszewska, Andre A. Mignault, Zeng Yi, Guy de The, Myron Essex, Jean-Louis Sankale, Jason H. Moore, Kwabena Poku, John Phair, James J. Goedert, David Vlahov, Scott M. Williams, Sarah A. Tishkoff, Cheryl Winkler, Francisco M. De La Vega, Trevor Woodage, John J. Sninsky, David A. Hafler, David Altshuler, Dennis A. Gilbert, Stephen J. O'Brien, David Reich
Biology Faculty Articles

Methods for High-Density Admixture Mapping of Disease Genes, Nick Patterson, Neil Hattangadi, Barton Lane, Kirk E. Lohmueller, David A. Hafler, Jorge R. Oksenberg, Stephen L. Hauser, MIchael W. Smith, Stephen J. O'Brien, David Altshuler, Mark J. Daly, David Reich
Biology Faculty Articles

Prevalence of Bartonella Infection in Wild African Lions (Panthera leo) and Cheetahs (Acinonyx jubatus), S. Molia, B. B. Chomel, R. W. Kasten, C. M. Leutenegger, B. R. Steele, L. Marker, Janice S. Martenson, D. F. Keet, R. G. Bengis, R. P. Peterson, L. Munson, Stephen J. O'Brien
Biology Faculty Articles

Patterns of Feline Immunodeficiency Virus Multiple Infection and Genome Divergence in a Free-Ranging Population of African Lions, Jennifer L. Troyer, Jill Pecon-Slattery, Melody E. Roelke, Lori Black, Craig Packer, Stephen J. O'Brien
Biology Faculty Articles

Patterns of Ethnic Diversity Among the Genes That Influence AIDS, Cheryl Winkler, Ping An, Stephen J. O'Brien
Biology Faculty Articles

Genomically Intact Endogenous Feline Leukemia Viruses of Recent Origin, Alfred L. Roca, Jill Pecon-Slattery, Stephen J. O'Brien
Biology Faculty Articles

Seroprevalence of Bartonella infection in American free-ranging and captive pumas (Felis concolor) and bobcats (Lynx rufus), Bruno B. Chomel, Yoko Kikuchi, Janice S. Martenson, Melodie E. Roelke-Parker, Chao Chin Chang, Rickie W. Kasten, Janet E. Foley, John Laudre, Kerry Murphy, Pamela K. Swift, Vicki L. Kramer, Stephen J. O'Brien
Biology Faculty Articles

Coronavirus Outbreak in Cheetahs: Lessons for SARS, A. J. Pearks Wilkerson, Emma C. Teeling, Jennifer L. Troyer, Gila Kahila Bar-Gal, Melody E. Roelke, Laurie Marker, Jill Pecon-Slattery, Stephen J. O'Brien
Biology Faculty Articles

Fraction of Cases of Acquired Immunodeficiency Syndrome Prevented by the Interactions of Identified Restriction Gene Variants, M. J. Silverberg, M. W. Smith, Joan S. Chmiel, Roger Detels, Joseph Margolick, Charles Rinaldo, Stephen J. O'Brien, A. Muñoz
Biology Faculty Articles

Seroprevalence of Toxoplasma gondii in American Free-Ranging or Captive Pumas (Felis concolor) and Bobcats (Lynx rufus), Yoko Kikuchi, B. B. Chomel, R. W. Kasten, Janice S. Martenson, Pamela K. Swift, Stephen J. O'Brien
Biology Faculty Articles

Phylogenetic and Phylogeographic Analysis of Iberian Lynx Populations, Warren E. Johnson, Jose A. Godoy, F. Palomares, M. Delibes, M. Fernandes, E. Revilla, Stephen J. O'Brien
Biology Faculty Articles

Phylogeography and Subspecies Assessment of Vicuñas in Chile and Bolivia Utilizing mtDNA and Microsatellite Markers: Implications for Vicuña Conservation and Management, Ronald J. Sarno, Lilian Villalba, Cristian Bonacic, Benito Gonzalez, Beatriz Zapata, David W. Macdonald, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Serosurvey of Viral Infections in Free-Ranging Namibian Cheetahs (Acinonyx jubatus), L. Munson, L. Marker, Edward Dubovi, Jennifer A. Spencer, J. F. Evermann, Stephen J. O'Brien
Biology Faculty Articles

Public Stem Cell Banks: Considerations of Justice in Stem Cell Research and Therapy, Ruth R. Faden, Liza Dawson, Alison S. Bateman-House, Dawn Mueller Agnew, Hilary Bok, Dan W. Brock, Aravinda Chakravarti, Xiaojiang Gao, Mark Greene, Patricia A. King, Stephen J. O'Brien, David H. Sachs, Kathryn E. Schill, Andrew Siegel, Davor Solter, Sonia M. Suter, Catherine M. Verfaillie, LeRoy B. Walters, John Gearhart
Biology Faculty Articles

Safety Issues in Cell-Based Intervention Trials, Liza Dawson, Alison S. Bateman-House, Dawn Mueller Agnew, Hilary Bok, Dan W. Brock, Aravinda Chakravarti, Mark Greene, Patricia A. King, Stephen J. O'Brien, David H. Sachs, Kathryn E. Schill, Andrew Siegel, Davor Solter, Sonia M. Suter, Catherine M. Verfaillie, LeRoy B. Walters, John Gearhart, Ruth R. Faden
Biology Faculty Articles

Reconstructing the Genomic Architecture of Mammalian Ancestors Using Multispecies Comparative Maps, William J. Murphy, Guillaume Bourque, Glenn Tesler, Pavel Pevzner, Stephen J. O'Brien
Biology Faculty Articles

Non-Hodgkin's B Cell Lymphoma in Persons with Acquired Immunodeficiency Syndrome is Associated with Increased Serum Levels of IL10, or the IL10 Promoter −592 C/C Genotype, Elizabeth Crabb Breen, W. John Boscardin, Roger Detels, Lisa Jacobson, Michael W. Smith, Stephen J. O'Brien, Joan S. Chmiel, Charles Rinaldo, Shenghan Lai, Otoniel Martinez-Maza
Biology Faculty Articles

Comprehensive Analysis of Class I and Class II HLA Antigens and Chronic Hepatitis B Virus Infection, Chloe L. Thio, David L. Thomas, Peter Karacki, Xiaojiang Gao, Darlene Marti, Richard A. Kaslow, James J. Goedert, Margaret Hilgartner, Steffanie A. Strathdee, Priya Duggal, Stephen J. O'Brien, Jacquie Astemborski, Mary Carrington
Biology Faculty Articles

MCP-1-MCP-3–Eotaxin Gene Cluster Influences HIV-1 Transmission, William Modi, James J. Goedert, Steffanie A. Strathdee, Susan Buchbinder, Roger Detels, Sharyne Donfield, Stephen J. O'Brien, Cheryl Winkler
Biology Faculty Articles

Mapping of 53 Loci in American Mink (Mustela vison), S. B. Kuznetsov, N. M. Matveeva, William J. Murphy, Stephen J. O'Brien, O. L. Serov
Biology Faculty Articles

Automated Single-Strand Conformation Polymorphism Reveals Low Diversity of a Major Histocompatibility Complex Class II Gene in the Threatened New Zealand Sea Lion, G. M. Lento, C. S. Baker, Victor David, Naoya Yuhki, N. J. Gales, Stephen J. O'Brien
Biology Faculty Articles

A Dog's Breakfast?, Stephen J. O'Brien, William J. Murphy
Biology Faculty Articles

Nuclear Gene Sequences Confirm an Ancient Link Between New Zealand's Short-Tailed Bat and South American Noctilionoid Bats, Emma C. Teeling, Ole Madsen, William J. Murphy, Mark S. Springer, Stephen J. O'Brien
Biology Faculty Articles

The Origin of Human Chromosome 1 and its Homologs in Placental Mammals, William J. Murphy, Lutz Fronicke, Stephen J. O'Brien, Roscoe Stanyon
Biology Faculty Articles

Applying Molecular Genetic Tools to the Conservation and Action Plan for the Critically Endangered Far Eastern Leopard (Panthera pardus orientalis), Olga Uphyrkina, Stephen J. O'Brien
Biology Faculty Articles

A Tumor Necrosis Factor-α-Inducible Promoter Variant of Interferon-γ Accelerates CD4+ T Cell Depletion in Human Immunodeficiency Virus-1-Infected Individuals, Ping An, David Vlahov, Joseph Margolick, John Phair, Thomas R. O'Brien, J. A. Lautenberger, Stephen J. O'Brien, Cheryl Winkler
Biology Faculty Articles

Comparative Genome Organization of Human, Murine, and Feline MHC Class II Region, Naoya Yuhki, Thomas W. Beck, Robert M. Stephens, Yoko Nishigaki, Kymberly Newmann, Stephen J. O'Brien
Biology Faculty Articles

Haplotype Diversity in the Interleukin-4 Gene is Not Associated with HIV-1 transmission and AIDS Progression, William Modi, Thomas R. O'Brien, David Vlahov, Susan Buchbinder, Edward Gomperts, John Phair, Stephen J. O'Brien, Cheryl Winkler
Biology Faculty Articles

Genetic Influence of CXCR6 Chemokine Receptor Alleles on PCP-Mediated AIDS Progression Among African Americans, Priya Duggal, P. An, T. H. Beaty, Steffanie A. Strathdee, H. Farzadegan, R. D. Markham, L. Johnson, Stephen J. O'Brien, David Vlahov, Cheryl Winkler
Biology Faculty Articles

Quantitative Polymerase Chain Reaction-based Assay for Estimating DNA Yield Extracted from Domestic Cat Specimens, Marilyn Menotti-Raymond, Victor David, Leslie Wachter, Naoya Yuhki, Stephen J. O'Brien
Biology Faculty Articles

Association of Polymorphisms in Human Leukocyte Antigen Class I and Transporter Associated with Antigen Processing Genes with Resistance to Human Immunodeficiency Virus Type 1 Infection, Chenglong Liu, Mary Carrington, Richard A. Kaslow, Xiaojiang Gao, Charles Rinaldo, Lisa Jacobson, Joseph Margolick, John Phair, Stephen J. O'Brien, Roger Detels
Biology Faculty Articles

Molecular Genetics and Evolution of Melanism in the Cat Family, Eduardo Eizirik, Naoya Yuhki, Warren E. Johnson, Marilyn Menotti-Raymond, Steven S. Hannah, Stephen J. O'Brien
Biology Faculty Articles

The Influence of HLA Genotype on AIDS, Mary Carrington, Stephen J. O'Brien
Biology Faculty Articles

Placental Mammal Diversification and the Cretaceous-Tertiary Boundary, Mark S. Springer, William J. Murphy, Eduardo Eizirik, Stephen J. O'Brien
Biology Faculty Articles

Radiation Hybrid Mapping of 304 Novel Microsatellites in the Domestic Cat Genome, Marilyn Menotti-Raymond, V. A. David, R. Agarwala, Alejandro A. Schaffer, R. Stephens, Stephen J. O'Brien, W. J. Murphy
Biology Faculty Articles

Reproductive Status of Endemic Felid Species in Latin American Zoos and Implications for Ex Situ Conservation, William Swanson, Warren E. Johnson, Richard Cambre, S. Citino, K. B. Quigley, Dulce Brousset, R. N. Morais, N. Moreira, Stephen J. O'Brien, David E. Wildt
Biology Faculty Articles

Second-Generation Integrated Genetic Linkage/Radiation Hybrid Maps of the Domestic Cat (Felis catus), Marilyn Menotti-Raymond, V. A. David, Z. Q. Chen, K. A. Menotti, S. Sun, Alejandro A. Schaffer, R. Agarwala, James F. Tomlin, Stephen J. O'Brien, William J. Murphy
Biology Faculty Articles

Patterns of Molecular Genetic Variation Among African Elephant Populations, Kenine E. Comstock, Nicholas Georgiadis, Jill Pecon-Slattery, Alfred L. Roca, Elaine A. Ostrander, Stephen J. O'Brien, Samuel K. Wasser
Biology Faculty Articles

Human Immunodeficiency Virus Type 1 (HIV-1)-Specific CD8+-T-Cell Responses for Groups of HIV-1-Infected Individuals with Different HLA-B*35 Genotypes, Xia Jin, Xiaojiang Gao, Murugappan Ramanathan Jr., Geoffrey R. Deschenes, George W. Nelson, Stephen J. O'Brien, James J. Goedert, David D. Ho, Thomas R. O'Brien, Mary Carrington
Biology Faculty Articles

Feline Immunodeficiency Virus Integration in B-Cell Lymphoma Identifies a Candidate Tumor Suppressor Gene on Human Chromosome 15q151, Julia Beatty, Anne Terry, Julie MacDonald, Elizabeth Gault, Stanley Cevario, Stephen J. O'Brien, Ewan Cameron, James C. Neil
Biology Faculty Articles

Faecal Genetic Analysis to Determine the Presence and Distribution of Elusive Carnivores: Design and Feasibility for the Iberian Lynx, F. Palomares, Jose A. Godoy, A. Piriz, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Sequencing the Genome of the Domestic Cat Felis catus, Stephen J. O'Brien, Eric S. Lander, M. E. Haskins, Urs Giger, Niels C. Pederson, David E. Wildt, William J. Murphy, Naoya Yuhki, Marilyn Menotti-Raymond
Biology Faculty Articles

The MeowPlex: A New DNA Test Using Tetranucleotide STR Markers for the Domestic Cat, John M. Butler, Victor A. David, Stephen J. O'Brien, Marilyn Menotti-Raymond
Biology Faculty Articles

Balanced Polymorphism Selected by Genetic Versus Infectious Human Disease, Michael Dean, Mary Carrington, Stephen J. O'Brien
Biology Faculty Articles

Conservation Genetics of the Far Eastern Leopard (Panthera pardus orientalis), Olga Uphyrkina, Dale Miquelle, Howard Quigley, Carlos A. Driscoll, Stephen J. O'Brien
Biology Faculty Articles

Immunologic Profile of Highly Exposed Yet HIV Type 1-Seronegative Men, Otto Yang, W. John Boscardin, Jose Matud, Mary Ann Hausner, Lance E. Hultin, Patricia M. Hultin, Roger Shih, John Ferbas, Frederick P. Siegal, Michael Shodell, Gene M. Shearer, Edith Grene, Mary Carrington, Stephen J. O'Brien, Charles B. Price, Roger Detels, Beth D. Jamieson, Janis Giorgi
Biology Faculty Articles

Eighteen Polymorphic Microsatellite Markers for the Highly Endangered Spanish Imperial Eagle (Aquila adalberti) and Related Species, Begoña Martinez-Cruz, Victor A. David, Jose A. Godoy, Juan J. Negro, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Epistatic Interaction Between KIR3DS1 and HLA-B Delays the Progression to AIDS, Maureen P. Martin, Xiaojiang Gao, Jeong-Hee Lee, George W. Nelson, Roger Detels, James J. Goedert, Susan Buchbinder, Keith Hoots, David Vlahov, John Trowsdale, Michael Wilson, Stephen J. O'Brien, Mary Carrington
Biology Faculty Articles

Modulating Influence on HIV/Aids by Interacting RANTES Gene Variants, Ping An, George W. Nelson, Lihua Wang, Sharyne Donfield, James J. Goedert, John Phair, David Vlahov, Susan Buchbinder, William L. Farrar, William Modi, Stephen J. O'Brien, Cheryl Winkler
Biology Faculty Articles

HLA-Cw*04 and Hepatitis C Virus Persistence, Chloe L. Thio, Xiaojiang Gao, James J. Goedert, David Vlahov, Kenrad E. Nelson, Margaret Hilgartner, Stephen J. O'Brien, Peter Karacki, Jacquie Astemborski, Mary Carrington, David L. Thomas
Biology Faculty Articles

Mmu 16- Comparative Genomic Highlights, Neal G. Copeland, Nancy A. Jenkins, Stephen J. O'Brien
Biology Faculty Articles

HIV-1 Infection in Individuals With the CCR5-Δ32/Δ32 Genotype: Acquisition of Syncytium-Inducing Virus at Seroconversion, Haynes W. Sheppard, Nelson L. Michael, Stephen J. O'Brien, Michael Dean, Mary Carrington, Dale Dondero, Susan Buchbinder
Biology Faculty Articles

Genomic Microsatellites as Evolutionary Chronometers: A Test in Wild Cats, Carlos A. Driscoll, Marilyn Menotti-Raymond, George Nelson, David Goldstein, Stephen J. O'Brien
Biology Faculty Articles

The Feline Genome Project, Stephen J. O'Brien, Marilyn Menotti-Raymond, William J. Murphy, Naoya Yuhki
Biology Faculty Articles

Nonpathogenic Lion and Puma Lentiviruses Impart Resistance to Superinfection by Virulent Feline Immunodeficiency Virus, Sue VandeWoude, Catherine A. Hageman, Stephen J. O'Brien, Edward A. Hoover
Biology Faculty Articles

The Importance of Assessing Effect Modification When Asserting Racial Differences in Associations Between Human Leukocyte Antigen Class II Alleles and Hepatitis C Virus Outcomes, Chloe L. Thio, Stephen J. O'Brien, Mary Carrington
Biology Faculty Articles

Patterns of Genetic Diversity in Remaining Giant Panda Populations, Zhi Lu, Warren E. Johnson, Marilyn Menotti-Raymond, Naoya Yuhki, Janice S. Martenson, Susan Mainka, Huang Shi-Qiang, Zheng Zhihe, Guanghan Li, Wenshi Pan, Xiarong Mao, Stephen J. O'Brien
Biology Faculty Articles

Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics, William J. Murphy, Eduardo Eizirik, Stephen J. O'Brien, Ole Madsen, Mark Scally, Christophe J. Douady, Emma Teeling, Oliver A. Ryder, Michael J. Stanhope, Wilfried W. de Jong, Mark S. Springer
Biology Faculty Articles

A Radiation Hybrid Mapping Panel for the Rhesus Macacque, William J. Murphy, J. E. Page, C. Smith Jr., Ronald C. Desrosiers, Stephen J. O'Brien
Biology Faculty Articles

Considering Genetic Profiles in Functional Studies of Immune Responsiveness to HIV-1, Mary Carrington, George Nelson, Stephen J. O'Brien
Biology Faculty Articles

Phylogenetics, Genome Diversity and Origin of Modern Leopard, Panthera pardus, Olga Uphyrkina, Warren E. Johnson, Howard Quigley, Dale Miquelle, L. Marker, Stephen J. O'Brien
Biology Faculty Articles

Markers for Mapping by Admixture Linkage Disequilibrium in African American and Hispanic Populations, Michael W. Smith, J. A. Lautenberger, Hyoung Doo Shin, Jean-Paul Chretien, Sadeep Shrestha, Dennis A. Gilbert, Stephen J. O'Brien
Biology Faculty Articles

Structure and Patterns of Sequence Variation in the Mitochondrial DNA Control Region of the Great Cats, Jae-Heup Kim, Eduardo Eizirik, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

HLA and AIDS: A Cautionary Tale, Stephen J. O'Brien, Xiaojiang Gao, Mary Carrington
Biology Faculty Articles

MHC Class I Molecules and Progression to AIDS, Mary Carrington, Xiaojiang Gao, Stephen J. O'Brien
Biology Faculty Articles

Genetic Evidence for Two Species of Elephant in Africa, Alfred L. Roca, Nicholas Georgiadis, Jill Pecon-Slattery, Stephen J. O'Brien
Biology Faculty Articles

Racial Differences in HLA Class II Associations with Hepatitis C Virus Outcomes, Chloe L. Thio, David L. Thomas, James J. Goedert, David Vlahov, Kenrad E. Nelson, Margaret Hilgartner, Stephen J. O'Brien, Peter Karacki, Darlene Marti, Jacquie Astemborski, Mary Carrington
Biology Faculty Articles

Integration of the Feline Radiation Hybrid and Linkage Maps, Shan Sun, William J. Murphy, Marilyn Menotti-Raymond, Stephen J. O'Brien
Biology Faculty Articles

Patterns of Size Homoplasy at 10 Microsatellite Loci in Pumas (Puma concolor), Melanie Culver, Marilyn Menotti-Raymond, Stephen J. O'Brien
Biology Faculty Articles

On Choosing Mammalian Genomes for Sequencing, Stephen J. O'Brien, Eduardo Eizirik, William J. Murphy
Biology Faculty Articles

rPatterns of mtDNA and Microsatellite Variation in an Island and Mainland Population of Guanacos in Southern Chile, Ronald J. Sarno, William L. Franklin, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Effect of a Single Amino Acid Change in MHC Class I Molecules on the Rate of Progression to AIDS, Xiaojiang Gao, George W. Nelson, Peter Karacki, Maureen P. Martin, John Phair, Richard A. Kaslow, James J. Goedert, Susan Buchbinder, Keith Hoots, David Vlahov, Stephen J. O'Brien, Mary Carrington
Biology Faculty Articles

Canine and Feline Parvoviruses Can Use Human or Feline Transferrin Receptors to Bind, Enter, and Infect Cells, John S. L. Parker, William J. Murphy, Dai Wang, Stephen J. O'Brien, Colin R. Parrish
Biology Faculty Articles

Immunologic and Virologic Response to Highly Active Antiretroviral Therapy in the Multicenter AIDS Cohort Study, Traci Yamashita, John Phair, A. Muñoz, Joseph Margolick, Roger Detels, Stephen J. O'Brien, John Mellors, Steven M. Wolinsky, Lisa Jacobson
Biology Faculty Articles

Validation of Genetic Case-Control Studies in AIDS and Application to the CX3CR1 Polymorphism, Houria Hendel, Cheryl Winkler, Ping An, Elisabeth Roemer-Binns, George Nelson, Philippe Haumont, Stephen J. O'Brien, Kamel Khalilli, Jean-Francois Zagury, Jay Rappaport, Jean-Francois Zagury
Biology Faculty Articles

Molecular Dating and Biogeography of the Early Placental Mammal Radiation, Eduardo Eizirik, William J. Murphy, Stephen J. O'Brien
Biology Faculty Articles

Molecular Phylogenetics and the Origins of Placental Mammals, William J. Murphy, Eduardo Eizirik, Warren E. Johnson, Ya Ping Zhang, Oliver A. Ryder, Stephen J. O'Brien
Biology Faculty Articles

Comparative Feline Genomics: A BAC/PAC Contig Map of the Major Histocompatibility Complex Class II Region, Thomas W. Beck, Joan C. Menninger, Ginny Voigt, Kimberly Newmann, Yoko Nishigaki, William G. Nash, Robert M. Stephens, Yu Wang, Pieter J. de Jong, Stephen J. O'Brien, Naoya Yuhki
Biology Faculty Articles

Hepatitis C Virus Load is Associated with Human Immunodeficiency Virus Type 1 Disease Progression in Hemophiliacs, Eric S. Daar, Henry Lynn, Sharyne Donfield, Edward Gomperts, Stephen J. O'Brien, Margaret Hilgartner, Keith Hoots, David Chernoff, Steven Arkin, W.-Y. Wong, Cheryl Winkler, Hemophilia Growth and Development Study
Biology Faculty Articles

The Pattern of Phylogenomic Evolution of the Canidae, William G. Nash, Joan C. Menninger, Johannes Wienberg, Hesed M. Padilla-Nash, Stephen J. O'Brien
Biology Faculty Articles

Phylogeography, Population History and Conservation Genetics of Jaguars (Panthera onca, Mammalia, Felidae), Eduardo Eizirik, Jae-Heup Kim, Marilyn Menotti-Raymond, Peter G. Crawshaw Jr., Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Genetic Restriction of HIV-1 Pathogenesis to AIDS by Promoter Alleles of IL10, Hyoung Doo Shin, Cheryl Winkler, J. Claiborne Stephens, Jay Bream, Howard Young, James J. Goedert, Thomas R. O'Brien, David Vlahov, Susan Buchbinder, Janis Giorgi, Charles Rinaldo, Sharyne Donfield, Anne Willoughby, Stephen J. O'Brien, Michael W. Smith
Biology Faculty Articles

Genetic Heterogeneity and Molecular Epidemiology of GB Virus C/Hepatitis G Virus in China, Ping An, H. Luo, T. Lu, Stephen J. O'Brien, Cheryl Winkler
Biology Faculty Articles

Development of Microsatellite Markers in the Guanaco, Lama guanicoe: Utility for South American Camelids, Ronald J. Sarno, Victor A. David, William L. Franklin, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

The Effect of Genetic Variation in Chemokines and Their Receptors on HIV Transmission and Progression to AIDS, Stephen J. O'Brien, John P. Moore
Biology Faculty Articles

Influence of CCR5 Promoter Haplotypes on AIDS Progression in African–Americans, Ping An, Maureen P. Martin, George W. Nelson, Mary Carrington, Michael W. Smith, Kui Gong, David Vlahov, Stephen J. O'Brien, Cheryl Winkler
Biology Faculty Articles

A Radiation Hybrid Map of the Cat Genome: Implications for Comparative Mapping, William J. Murphy, Shan Sun, Zhang-Qun Chen, Naoya Yuhki, Deborah Hirschmann, Marilyn Menotti-Raymond, Stephen J. O'Brien
Biology Faculty Articles

Patterns of Diversity Among SINE Elements Isolated from Three Y-Chromosome Genes in Carnivores, Jill Pecon-Slattery, William J. Murphy, Stephen J. O'Brien
Biology Faculty Articles

Genomic Ancestry of the American Puma (Puma concolor), Melanie Culver, Warren E. Johnson, Jill Pecon-Slattery, Stephen J. O'Brien
Biology Faculty Articles

Unusual Polymorphisms in Human Immunodeficiency Virus Type 1 Associated with Nonprogressive Infection, Louis Alexander, Emma Weiskopf, Thomas C. Greenough, Nathan C. Gaddis, Marcy C. Auerbach, MIchael H. Malim, Stephen J. O'Brien, Bruce D. Walker, John L. Sullivan, Ronald C. Desrosiers
Biology Faculty Articles

Novel Gene Conversion Between X-Y Homologues Located in the Nonrecombining Region of the Y Chromosome in Felidae (Mammalia), Jill Pecon Slattery, Leslie Sanner-Wachter, Stephen J. O'Brien
Biology Faculty Articles

Significant Admixture Linkage Disequilibrium Across 30 cM Around the FY Locus in African Americans, J. A. Lautenberger, J. Claiborne Stephens, Stephen J. O'Brien, Michael W. Smith
Biology Faculty Articles

Polygenic and Multifactorial Disease Gene Association in Man: Lessons from AIDS, Stephen J. O'Brien, George W. Nelson, Cheryl Winkler, Michael W. Smith
Biology Faculty Articles

Adaptive Cycles: Parasites Selectively Reduce Inbreeding in Soay Sheep, Stephen J. O'Brien
Biology Faculty Articles

Extensive Conservation of Sex Chromosome Organization Between Cat and Human Revealed by Parallel Radiation Hybrid Mapping, William J. Murphy, Shan Sun, Zhang-Qun Chen, Jill Pecon-Slattery, Stephen J. O'Brien
Biology Faculty Articles

A Comparative Gene Map of the Horse (Equus caballus), Alexandre R. Caetano, Yow-Ling Shiue, Leslie A. Lyons, Stephen J. O'Brien, Thomas F. Laughlin, Ann T. Bowling, James D. Murray
Biology Faculty Articles

Long-Term Nonprogressive Infection with Human Immunodeficiency Virus Type 1 in a Hemophilia Cohort, Thomas C. Greenough, Doreen B. Brettler, Frank Kirchhoff, Louis Alexander, Stephen J. O'Brien, Mohan Somasundaran, Katherine Luzuriaga, John L. Sullivan
Biology Faculty Articles

Taxonomic Hierarchy of HLA Class I Allele Sequences, L. McKenzie, Jill Pecon-Slattery, Mary Carrington, Stephen J. O'Brien
Biology Faculty Articles

Equine Synteny Mapping of Comparative Anchor Tagged Sequences (CATS) From Human Chromosome 5, Alexandre R. Caetano, Leslie A. Lyons, Thomas F. Laughlin, Stephen J. O'Brien, James D. Murray, Ann T. Bowling
Biology Faculty Articles

Viruses of the Serengeti: Patterns of Infection and Mortality in African Lions, Craig Packer, S. Altizer, Max J. G. Appel, Stephen J. O'Brien, M. Roelke-Parker, Regina Hofmann-Lehmann, Hans Lutz
Biology Faculty Articles

Phylogenomics: Ancestral Primate Viewed, Stephen J. O'Brien, Roscoe Stanyon
Biology Faculty Articles

Distribution of Two HIV-1–Resistant Polymorphisms (SDF1-30A and CCR2-64I) in East Asian and World Populations and Its Implication in AIDS Epidemiology, Bing Su, Li Jin, Fang Hu, Junhua Xiao, Jingchun Luo, Daru Lu, Weiling Zhang, Jiayou Chu, Ruofu Du, Zhencheng Geng, Xinfang Qiu, Jinglun Xue, Jiazhen Tan, Stephen J. O'Brien, Ranajit Chakraborty
Biology Faculty Articles

Rapid Radiation Events in the Family Ursidae Indicated by Likelihood Phylogenetic Estimation from Multiple Fragments of mtDNA, Lisette P. Waits, Jack Sullivan, Stephen J. O'Brien, R. H. Ward
Biology Faculty Articles

Genome Map: Comparative Genomics- Mammalian Radiations, Stephen J. O'Brien, John F. Eisenberg, Michael Miyamoto, S. Blair Hedges, Sudhir Kumar, Don E. Wilson, Marilyn Menotti-Raymond, William J. Murphy, William G. Nash, Leslie A. Lyons, Joan C. Menninger, Roscoe Stanyon, Johannes Wienberg, N. Copeland, Nancy A. Jenkins, Joel Gellin, Martine Yerle, Leif Andersson, James E. Womack, T. Broad, J. Postlethwait, Oleg Serov, Ernie Bailey, Michael R. James, Takeshi Watanabe, Matthew J. Wakefield, Jennifer Marshall Graves
Biology Faculty Articles

The Promise of Comparative Genomics in Mammals, Stephen J. O'Brien, Marilyn Menotti-Raymond, William J. Murphy, William Nash, Johannes Wienberg, Roscoe Stanyon, Neal G. Copeland, Nancy A. Jenkins, James E. Womack, Jennifer A. Marshall Graves
Biology Faculty Articles

Phenotypic Expressions of CCR5-Δ32/Δ32 Homozygosity, Giang T. Nguyen, Mary Carrington, Judith A. Beeler, Michael Dean, Louis M. Aledort, Philip M. Blatt, Alan R. Cohen, Donna DiMichele, M. Elaine Eyster, Craig M. Kessler, Barbara Konkle, Cindy Leissinger, Naomi Luban, Stephen J. O'Brien, James J. Goedert, Thomas R. O'Brien
Biology Faculty Articles

Reduced Risk of AIDS Lymphoma in Individuals Heterozygous for the CCR5-Δ32 Mutation, Michael Dean, Lisa Jacobson, Glen McFarlane, Joseph Margolick, Frank J. Jenkins, O. M. Zack Howard, Hui-Fang Dong, James J. Goedert, Susan Buchbinder, Edward Gomperts, David Vlahov, Joost J. Oppenheim, Stephen J. O'Brien, Mary Carrington
Biology Faculty Articles

Effects of Plasma HIV RNA, CD4+ T Lymphocytes, and the Chemokine Receptors CCR5 and CCR2b on HIV Disease Progression in Hemophiliacs, Eric S. Daar, Sharyne Donfield, Edward Gomperts, Margaret Hilgartner, Keith Hoots, David Chernoff, Cheryl Winkler, Stephen J. O'Brien, Hemophilia Growth and Development Study
Biology Faculty Articles

A Scan for Linkage Disequilibrium Across the Human Genome, Gavin A. Huttley, Michael W. Smith, Mary Carrington, Stephen J. O'Brien
Biology Faculty Articles

A Human Genome Map of Comparative Anchor Tagged Sequences, Z-Q. Chen, J. A. Lautenberger, Leslie A. Lyons, L. McKenzie, Stephen J. O'Brien
Biology Faculty Articles

Selection Against Susceptibility to HIV-1, Stephen J. O'Brien, Mary Carrington
Biology Faculty Articles

New Class I and II HLA Alleles Strongly Associated with Opposite Patterns of Progression to AIDS, Houria Hendel, Sophie Caillat-Zucman, Helene Lebuanec, Mary Carrington, Stephen J. O'Brien, Jean-Marie Andrieu, Francois Schachter, Daniel Zagury, Jay Rappaport, Cheryl Winkler, George W. Nelson, Jean-Francois Zagury
Biology Faculty Articles

Molecular Genetic Diversity and Evolution at the MHC DQB Locus in Four Species of Pinnipeds, A. Rus Hoelzel, J. Claiborne Stephens, Stephen J. O'Brien
Biology Faculty Articles

A Genetic Linkage Map of Microsatellites in the Domestic Cat (Felis catus), Marilyn Menotti-Raymond, Victor A. David, Leslie A. Lyons, Alejandro A. Schaffer, James F. Tomlin, Michelle K. Hutton, Stephen J. O'Brien
Biology Faculty Articles

Development of a Feline Whole Genome Radiation Hybrid Panel and Comparative Mapping of Human Chromosome 12 and 22 Loci, William J. Murphy, Marilyn Menotti-Raymond, Leslie A. Lyons, Mary A. Thompson, Stephen J. O'Brien
Biology Faculty Articles

Class II HLA Alleles and Hepatitis B Virus Persistence in African Americans, Chloe L. Thio, Mary Carrington, Darlene Marti, Stephen J. O'Brien, David Vlahov, Kenrad E. Nelson, Jacquie Astemborski, David L. Thomas
Biology Faculty Articles

CCR5 Promoter Alleles and Specific DNA Binding Factors, Jay Bream, Howard A. Young, Nancy Rice, Maureen P. Martin, Michael W. Smith, Mary Carrington, Stephen J. O'Brien
Biology Faculty Articles

HLA and HIV-1: Heterozygote Advantage and B*35-Cw*04 Disadvantage, Mary Carrington, George W. Nelson, Maureen P. Martin, Teri Kissner, David Vlahov, James J. Goedert, Richard A. Kaslow, Susan Buchbinder, Keith Hoots, Stephen J. O'Brien
Biology Faculty Articles

Comparative Genome Organization of the Major Histocompatibility Complex: Lessons from the Felidae, Stephen J. O'Brien, Naoya Yuhki
Biology Faculty Articles

Genetics of HIV-1 Infection: Chemokine Receptor Ccr5 Polymorphism and its Consequences, Mary Carrington, Michael Dean, Maureen P. Martin, Stephen J. O'Brien
Biology Faculty Articles

Development of Comparative Anchor Tagged Sequences (CATS) for Canine Genome Mapping, Leslie A. Lyons, J. S. Kehler, Stephen J. O'Brien
Biology Faculty Articles

CXCR4 Polymorphisms and HIV-1 Pathogenesis, Maureen P. Martin, Mary Carrington, Michael Dean, Stephen J. O'Brien, Haynes W. Sheppard, Scott A. Wegner, Nelson L. Michael
Biology Faculty Articles

Distinctive Effects of CCR5, CCR2, and SDF1 Genetic Polymorphisms in AIDS Progression, Houria Hendel, N. Henon, Helene Lebuanec, Abderrahim Lachgar, H. Poncelet, Sophie Caillat-Zucman, Cheryl Winkler, Michael W. Smith, L. Kenefic, Stephen J. O'Brien, W. Lu, Jean-Marie Andrieu, Daniel Zagury, Francois Schachter, Jay Rappaport, Jean-Francois Zagury
Biology Faculty Articles

Genetic acceleration of AIDS progression by a promoter variant of CCR5, Stephen J. O'Brien
Biology Faculty Articles

Genetic Acceleration of AIDS Progression by a Promoter Variant of CCR5, Maureen P. Martin, Michael Dean, Michael W. Smith, Cheryl Winkler, Bernard Gerrard, Nelson L. Michael, Benhur Lee, Robert W. Doms, Joseph Margolick, Susan Buchbinder, James J. Goedert, Thomas R. O'Brien, Margaret Hilgartner, David Vlahov, Stephen J. O'Brien, Mary Carrington
Biology Faculty Articles

Phylogeographic Patterns and Evolution of the Mitochondrial DNA Control Region in Two Neotropical Cats (Mammalia, Felidae), Eduardo Eizirik, Sandro L. Bonatto, Warren E. Johnson, Peter G. Crawshaw Jr., Jean Christophe Vie, Dulce Brousset, Stephen J. O'Brien, Francisco M. Salzano
Biology Faculty Articles

Association of HLA Profiles with Early Plasma Viral Load, CD4+ Cell Count and Rate of Progression to AIDS Following Acute HIV‐1 Infection, A. J. Saah, Donald R. Hoover, Shingui Weng, Mary Carrington, John Mellors, Charles R. Rinaldo Jr., Dean Mann, R. Apple, John Phair, Roger Detels, Stephen J. O'Brien, Cheryl Enger, Pamela Johnson, Richard A. Kaslow, Multicenter AIDS Cohort Study
Biology Faculty Articles

Phylogeographic Patterns of Feline Immunodeficiency Virus Genetic Diversity in the Domestic Cat, Margaret A. Carpenter, Eric W. Brown, D. W. MacDonald, Stephen J. O'Brien
Biology Faculty Articles

Genetic Characterization of Canine Distemper Virus in Serengeti Carnivores, Margaret A. Carpenter, Max J. G. Appel, Melody E. Roelke-Parker, Linda Munson, Heribert Hofer, Marion East, Stephen J. O'Brien
Biology Faculty Articles

Influence of the CCR2-V64I Polymorphism on Human Immunodeficiency Virus Type 1 Coreceptor Activity and on Chemokine Receptor Function of CCR2b, CCR3, CCR5, and CXCR4, Benhur Lee, Benjamin J. Doranz, Shalini Rana, Yanji Yi, Mario Mellado, Jose M. R. Frade, Carlos Martinez-A., Stephen J. O'Brien, Michael Dean, Ronald G. Collman, Robert W. Doms
Biology Faculty Articles

Exclusive and Persistent Use of the Entry Coreceptor CXCR4 by Human Immunodeficiency Virus Type 1 from a Subject Homozygous for CCR5 Δ32, Nelson L. Michael, Julie A. E. Nelson, Vineet N. Kewalramani, George Chang, Stephen J. O'Brien, John R. Mascola, Barbara Volsky, Mark Louder, Gilbert C. White II, Dan R. Littman, Ronald Swanstrom, Thomas R. O'Brien
Biology Faculty Articles

Dating the Origin of the CCR5-Δ32 AIDS-Resistance Allele by the Coalescence of Haplotypes, J. Claiborne Stephens, David E. Riech, David B. Goldstein, Hyoung Doo Shin, Michael W. Smith, Mary Carrington, Cheryl Winkler, Gavin A. Huttley, Rando Allikmets, Lynn Schriml, Bernard Gerrard, Michael Malasky, Maria D. Ramos, Susanne Morlot, Maria Tzetis, Carole Oddoux, Francesco S. di Giovine, Georgios Nasioulas, David Chandler, Michael Aseev, Matthew Hanson, Luba Kalaydjieva, Damjan Glavac, Paolo Gasparini, E. Kanavakis, Mireille Claustres, Marios Kambouris, Harry Ostrer, Gordon Duff, Vladislav Baranov, Hiljar Sibul, Andres Metspalu, David Goldman, Nick Martin, David Duffy, Jorg Schmidtke, Xavier Estivill, Stephen J. O'Brien, Michael Dean
Biology Faculty Articles

Progression to AIDS, Sharyne Donfield, Henry S. Lynn, Margaret Hilgartner, Michael W. Smith, Michael Dean, Mary Carrington, Cheryl Winkler, Stephen J. O'Brien
Biology Faculty Articles

Tracking the Evolution of the Elusive Andean Mountain Cat (Oreailurus jacobita) from Mitochondrial DNA, Warren E. Johnson, Melanie Culver, J. A. Iriarte, Eduardo Eizirik, K. L. Seymour, Stephen J. O'Brien
Biology Faculty Articles

CCR2-64I Allele and Genotype Association with Delayed AIDS Progression in African Women, A. O. Anzala, T. B. Ball, T. Rostron, Stephen J. O'Brien, F. A. Plummer, S. L. Rowland-Jones, University of Nairobi Collaboration for HIV Research
Biology Faculty Articles

Patterns of Y and X Chromosome DNA Sequence Divergence During the Felidae Radiation, Jill Pecon-Slattery, Stephen J. O'Brien
Biology Faculty Articles

C-C Chemokines, Pivotal in Protection Against HIV Type 1 Infection, Daniel Zagury, Abderrahim Lachgar, Vida Chams, Lat S. Fall, Jacky Bernard, Jean-Francois Zagury, Bernard Bizzini, Allesandro Gringeri, Elena Santagostino, Jay Rappaport, Michael Feldman, Stephen J. O'Brien, Arsene Burny, Robert C. Gallo
Biology Faculty Articles

Comparative Genomics: Tracking Chromosome Evolution in the Family Ursidae Using Reciprocal Chromosome Painting, William G. Nash, J. Wienberg, M. A. Ferguson-Smith, J. C. Menninger, Stephen J. O'Brien
Biology Faculty Articles

Cloning and Mapping of Cat (Felis catus) Immunoglobulin and T-Cell Receptor Genes, Kyu-Woan Cho, Hwa-Young Youn, Masaru Okuda, Hitoshi Satoh, Stanley Cevario, Stephen J. O'Brien, Toshihiro Watari, Hajime Tsujimoto, Atsuhiko Hasegawa
Biology Faculty Articles

Genetic Restriction of AIDS Pathogenesis by an SDF-1 Chemokine Gene Variant, Cheryl Winkler, William Modi, Michael W. Smith, George W. Nelson, Xueyun Wu, Mary Carrington, Michael Dean, Tasaku Honjo, Kai Tashiro, D. Yabe, Susan Buchbinder, Eric Vittinghoff, James J. Goedert, Thomas R. O'Brien, Lisa Jacobson, Roger Detels, Sharyne Donfield, Anne Willoughby, Edward Gomperts, David Vlahov, John Phair, ALIVE Study, Hemophilia Growth and Development Study, Multicenter AIDS Cohort Study, Multicenter Hemophilia Cohort Study, San Francisco City Cohort, Stephen J. O'Brien
Biology Faculty Articles

Novel Alleles of the Chemokine-Receptor Gene CCR5, Mary Carrington, Teri Kissner, Bernard Gerrard, Sergey Ivanov, Stephen J. O'Brien, Michael Dean
Biology Faculty Articles

CCR2 Chemokine Receptor and AIDS Progression, Michael W. Smith, Mary Carrington, Cheryl Winkler, Deborah A. Lomb, Michael Dean, Gavin A. Huttley, Stephen J. O'Brien
Biology Faculty Articles

Evolutionary Analysis of the 5'-Terminal Region of Hepatitis G Virus Isolated From Different Regions in China, Ping An, Li Wei, Xueyun Wu, Naoya Yuhki, Stephen J. O'Brien, Cheryl Winkler
Biology Faculty Articles

Cloning and Chromosome Mapping of the Feline Genes p21WAF1 and p27Kip1, Masaru Okuda, Ken-ichi Minehata, Asuka Setoguchi University of Tokyo, Kyu-Woan Cho, Noriko Nakamura, Kazuo Nishigaki, Toshihiro Watari, Stanley Cevario, Stephen J. O'Brien, Hajime Tsujimoto, Atsuhiko Hasegawa
Biology Faculty Articles

Comparative Genomics: Lessons From Cats, Stephen J. O'Brien, J. Wienberg, Leslie A. Lyons
Biology Faculty Articles

In Search of AIDS-Resistance Genes, Stephen J. O'Brien, Michael Dean
Biology Faculty Articles

Comparative Gene Mapping in the Domestic Cat (Felis catus), Stephen J. O'Brien, Stanley Cevario, Janice S. Martenson, M. A. Thompson, William G. Nash, E. Chang, J. A. M. Graves, J. A. Spencer, K.-W. Cho, Hajime Tsujimoto, Leslie A. Lyons
Biology Faculty Articles

CCR5-Δ32 Gene Deletion in HIV-1 Infected Patients, Michael W. Smith, Michael Dean, Mary Carrington, Gavin A. Huttley, Stephen J. O'Brien
Biology Faculty Articles

Contrasting Genetic Influence of CCR2 and CCR5 Variants on HIV-1 Infection and Disease Progression, Michael W. Smith, Michael Dean, Mary Carrington, Cheryl Winkler, Gavin A. Huttley, Deborah A. Lomb, James J. Goedert, Thomas R. O'Brien, Lisa Jacobson, Richard A. Kaslow, Susan Buchbinder, Eric Vittinghoff, David Vlahov, Keith Hoots, Margaret Hilgartner, Hemophilia Growth and Development Study, Multicenter AIDS Cohort Study, Multicenter Hemophilia Cohort Study, San Francisco City Cohort, ALIVE Study, Stephen J. O'Brien
Biology Faculty Articles

The family line: The human-cat connection, Stephen J. O'Brien
Biology Faculty Articles

The Family Line: The Human-Cat Connection, Mauriciou Anton, Stephen J. O'Brien
Biology Faculty Articles

Growth of Lion and Puma Lentiviruses in Domestic Cat Cells and Comparisons with FIV, Sue VandeWoude, Stephen J. O'Brien, Ken Langelier, William D. Hardy, Jill P. Slattery, Evelyn E. Zuckerman, Edward A. Hoover
Biology Faculty Articles

Infectivity of Lion and Puma Lentiviruses for Domestic Cats, Sue VandeWoude, Stephen J. O'Brien, Edward A. Hoover
Biology Faculty Articles

Pet Cat Hair Implicates Murder Suspect, Marilyn Menotti-Raymond, Victor A. David, Stephen J. O'Brien
Biology Faculty Articles

The tax Gene Sequences Form Two Divergent Monophyletic Lineages Corresponding to Types I and II of Simian and Human T-Cell Leukemia/Lymphotropic Viruses, Adriana Giri, Jill Pecon-Slattery, Walid Heneine, Antoine Gessain, Emilia Rivadeneira, Ronald C. Desrosiers, Leon Rosen, Ronald Anthony, Joko Pamungkas, Diah Iskandriati, Allen L. Richards, Vincent Herve, Harold McClure, Stephen J. O'Brien, Genoveffa Franchini
Biology Faculty Articles

The Long and Short of Nuclear Mitochondrial DNA (Numt) Lineages, Jose V. Lopez, J. Claiborne Stephens, Stephen J. O'Brien
Biology Faculty Articles

Nature and Origin of Polymorphism in Feline MHC Class II DRA and DRB Genes, Naoya Yuhki, Stephen J. O'Brien
Biology Faculty Articles

The HIV-AIDS Debate is Over, Stephen J. O'Brien
Biology Faculty Articles

Conservation Genetics of the Koala (Phascolarctos cinereus) : Low Mitochondrial DNA Variation Amongst Southern Australian Populations, Andrea C. Taylor, Jenny Marshall Graves, Neil D. Murray, Stephen J. O'Brien, Naoya Yuhki, Bill Sherwin
Biology Faculty Articles

Genetic individualization of domestic cats using feline STR loci for forensic applications, Marilyn Menotti-Raymond, Victor A. David, J. Claiborne Stephens, Leslie A. Lyons, Stephen J. O'Brien
Biology Faculty Articles

Assignment of the Cat Immunoglobulin Heavy Chain Genes IGHM and IGHG to Chromosome B3q26 and T Cell Receptor Chain Gene TCRG to A2q12-->q13 by Fluorescence In Situ Hybridization, K. W. Cho, H. Satoh, H. Y. Youn, T. Watari, H. Tsujimoto, Stephen J. O'Brien, A. Hasegawa
Biology Faculty Articles

Conservation of Human vs. Feline Genome Organization Revealed by Reciprocal Chromosome Painting, J. Weinberg, R. Stanyon, W. G. Nash, P. C. O'Brien, F. Yang, Stephen J. O'Brien, M. A. Ferguson-Smith
Biology Faculty Articles

Comparative Anchor Tagged Sequences (CATS) for Integrative Mapping of Mammalian Genomes, Leslie A. Lyons, Thomas F. Laughlin, Neal G. Copeland, Nancy A. Jenkins, James E. Womack, Stephen J. O'Brien
Biology Faculty Articles

Phylogenetic Reconstruction of the Felidae Using 16S rRNA and NADH-5 Mitochondrial Genes, Warren E. Johnson, Stephen J. O'Brien
Biology Faculty Articles

Rescue and Maturation in Vitro of Follicular Oocytes Collected from Nondomestic Felid Species, L. A. Johnston, A. M. Donoghue, Stephen J. O'Brien, David E. Wildt
Biology Faculty Articles

Participants in HIV Study: Correction, Michael Dean, Mary Carrington, James J. Goedert, Stephen J. O'Brien
Biology Faculty Articles

HIV Causes AIDS: Koch's Postulates Fulfilled, Stephen J. O'Brien, James J. Goedert
Biology Faculty Articles

Comparative Genome Organization of Vertebrates, L. Andersson, A. Archibald, M. Ashburner, S. Audun, W. Barendse, J. Bitgood, C. Bottema, T. Broad, S. Brown, D. Burt, C. Charlier, N. Copeland, S. Davis, M. Davisson, J. Edwards, A. Eggen, G. Elgar, J. T. Eppig, I. Franklin, P. Grewe, T. Gill, J. A. M. Graves, R. Hawken, J. Hetzel, A. Hilyard, H. Jacob, L. Jaswinska, N. Jenkins, H. Kunz, G. Levan, O. Lie, Leslie A. Lyons, P. Maccarone, C. Mellersh, G. Montgomery, S. Moore, C. Moran, D. Morizot, M. Neff, F. Nicholas, Stephen J. O'Brien, Y. Parsons, J. Peters, J. Postlethwait, M. Raymond, M. Rothschild, L. Schook, Y. Sugimoto, C. Szpirer, M. Tate, J. Taylor, J. VandeBerg, M. Wakefield, J. Wienberg, James E. Womack
Biology Faculty Articles

Genomic Differentiation Among Natural Populations of Orang-Utan (Pongo pygmaeus), Lu Zhi, William B. Karesh, Dianne N. Janczewski, Harmony Frazier-Taylor, Dondin Sajuthi, Francis Gombek, Mahedi Andau, Janice S. Martenson, Stephen J. O'Brien
Biology Faculty Articles

Genetic and Phylogenetic Divergence of Feline Immunodeficiency Virus in the Puma (Puma concolor), Margaret A. Carpenter, Eric W. Brown, Melanie Culver, Warren E. Johnson, Jill Pecon-Slattery, Dulce Brousset, Stephen J. O'Brien
Biology Faculty Articles

Prevalence of Antibodies to Feline Parvovirus, Calicivirus, Herpesvirus, Coronavirus, and Immunodeficiency Virus and of Feline Leukemia Virus Antigen and the Interrelationship of These Viral Infections in Free-Ranging Lions in East Africa, Regina Hofmann-Lehmann, Daniela Fehr, Markus Grob, Muhamed Elgizoli, Craig Packer, Janice S. Martenson, Stephen J. O'Brien, Hans Lutz
Biology Faculty Articles

Genetic Restriction of HIV-1 Infection and Progression to AIDS by a Deletion Allele of the CKR5 Structural Gene, Michael Dean, Mary Carrington, Cheryl Winkler, Gavin A. Huttley, Michael W. Smith, Rando Allikmets, James J. Goedert, Susan Buchbinder, Eric Vittinghoff, Edward Gomperts, Sharyne Donfield, David Vlahov, Richard A. Kaslow, A. J. Saah, Charles Rinaldo, Roger Detels, Hemophilia Growth and Development Study, Multicenter AIDS Cohort Study, Multicenter Hemophilia Cohort Study, San Francisco City Cohort, Stephen J. O'Brien
Biology Faculty Articles

Serum Antibody to Rift Valley Fever Virus in African Carnivores, Carol House, Kathleen A. Alexander, Pieter W. Kat, Stephen J. O'Brien, Joseph Mangiafico
Biology Faculty Articles

Resolution of Recent Radiations Within Three Evolutionary Lineages of Felidae using Mitochondrial Restriction Fragment Length Polymorphism Variation, Warren E. Johnson, Peter A. Dratch, Janice S. Martenson, Stephen J. O'Brien
Biology Faculty Articles

Complete Nucleotide Sequences of the Domestic Cat (Felis catus) Mitochondrial Genome and a Transposed mtDNA Tandem Repeat (Numt) in the Nuclear Genome, Jose V. Lopez, Stanley Cevario, Stephen J. O'Brien
Biology Faculty Articles

Influence of Combinations of Human Major Histocompatibility Complex Genes on the Course of HIV−1 Infection, Richard A. Kaslow, Mary Carrington, R. Apple, L. Park, A. Muñoz, A. J. Saah, James J. Goedert, Cheryl Winkler, Stephen J. O'Brien, Charles Rinaldo, Roger Detels, W. Blattner, John Phair, H. Erlich, Dean L. Mann
Biology Faculty Articles

Papillomavirus-Associated Focal Oral Hyperplasia in Wild and Captive Asian Lions (Panthera leo persica), John P. Sundberg, Richard J. Montali, Mitchell Bush, Lyndsay G. Phillips Jr., Stephen J. O'Brien, Bennett Jenson, Robert D. Burk, Marc Van Ranst
Biology Faculty Articles

A Canine Distemper Virus Epidemic in Serengeti Lions (Panthera leo), Melody E. Roelke-Parker, Linda Munson, Craig Packer, Richard Kock, Sarah Cleaveland, Margaret A. Carpenter, Stephen J. O'Brien, Andreas Pospischil, Regina Hofmann-Lehmann, Hans Lutz, George L. M. Mwamengele, M. N. Mgasa, G. A. Machange, Brian A. Summers, Max J. G. Appel
Biology Faculty Articles

Phylogeographic subspecies recognition in leopards (Panthera pardus): Molecular genetic variation, Sriyanie Miththapala, John Seidensticker, Stephen J. O'Brien
Biology Faculty Articles

Report of the Fifth International Workshop on Human Chromosome 11 Mapping 1996, T. B. Shows, M. Alders, S. Bennett, D. Burbee, P. Cartwright, S. Chandrasekharappa, P. Cooper, A. Courseaux, C. Davies, M. D. Devignes, P. Devilee, R. Elliott, G. Evans, J. Fantes, H. Garner, P. Gaudray, D. S. Gerhard, M. Gessler, M. Higgins, H. Hummerich, M. James, J. Lagercrantz, M. Litt, P. Little, M. Mannens, D. Munroe, N. Nowak, Stephen J. O'Brien, N. Parker, M. Perlin, L. Reid, C. Richard, M. Sawicki, D. Swallow, R. Thakker, E. van Heyningen, I. Vorechovsky, C. Wadelius, B. Weber, B. Zabel
Biology Faculty Articles

Molecular Genetic Identification of a Mexican Onza Speciment as a Puma (Puma concolor), Peter A. Dratch, Wendy Roslund, Janice S. Martenson, Melanie Culver, Stephen J. O'Brien
Biology Faculty Articles

Genome Evolution Comes of Age, Daniel L. Hartl, Fotis C. Kafatos, Stephen J. O'Brien
Biology Faculty Articles

Coadaptation and Immunodeficiency Virus: Lessons from the Felidae, Margaret A. Carpenter, Stephen J. O'Brien
Biology Faculty Articles

African Horse Sickness and African Carnivores, K. A. Alexander, P. W. Kat, Carol House, Stephen J. O'Brien, M. Karen Laurenson, J. Weldon McNutt, Bennie I. Osburn
Biology Faculty Articles

Molecular Phylogeny of the Red Panda (Ailurus fulgens), Jill Pecon-Slattery, Stephen J. O'Brien
Biology Faculty Articles

Genomic Prospecting, Stephen J. O'Brien
Biology Faculty Articles

Evolutionary Conservation of Ten Microsatellite Loci in Four Species of Felidae, Marilyn Menotti-Raymond, Stephen J. O'Brien
Biology Faculty Articles

Molecular Evolution of Mitochondrial 12S RNA and Cytochrome b Sequences in the Pantherine Lineage of Felidae, Dianne N. Janczewski, William Modi, J. Claiborne Stephens, Stephen J. O'Brien
Biology Faculty Articles

Assignment of Islet Amyloid Polypeptide (IAPP) Gene to Feline Chromosome B4 Using the Polymerase Chain Reaction Technique on Feline-Rodent Hybrid Cell Lines, K. Jordan, Stephen J. O'Brien, K. H. Johnson, T. D. O'Brien
Biology Faculty Articles

Hypervariable Genomic Variation to Reconstruct the Natural History of Populations: Lessons from the Big Cats, Marilyn Menotti-Raymond, Stephen J. O'Brien
Biology Faculty Articles

The Cheetah's Conservation Controversy, Stephen J. O'Brien
Biology Faculty Articles

Gene Mapping in the Spider Monkey (Ateles paniscus chamek), Hector Seuanez, Gilda Alves, Stephen J. O'Brien
Biology Faculty Articles

Evidence of Natural Bluetongue Virus Infection among African Carnivores, Kathleen A. Alexander, N. James MacLachlan, Pieter W. Kat, Carol House, Stephen J. O'Brien, Nicholas W. Lerche, Mary Sawyer, Laurence G. Frank, Kay Holekamp, Laura Smale, J. Weldon McNutt, M. Karen Laurenson, M. G. L. Mills, Bennie I. Osburn
Biology Faculty Articles

Polymorphic Admixture Typing in Human Ethnic Populations, Michael Dean, J. Claiborne Stephens, Cheryl Winkler, Deborah A. Lomb, Mark Ramsburg, Raleigh Boaze, Claudia Stewart, Lauren Charbonneau, David Goldman, Bernard J. Albaugh, James J. Goedert, R. Palmer Beasley, Lu-Yu Hwang, Susan Buchbinder, Michael Weedon, Patricia A. Johnson, Mary Eichelberger, Stephen J. O'Brien
Biology Faculty Articles

Mapping by Admixture Linkage Disequilibrium in Human Populations: Limits and Guidelines, J. Claiborne Stephens, D. Briscoe, Stephen J. O'Brien
Biology Faculty Articles

Phylogenetic Reconstruction of South American Felids Defined by Protein Electrophoresis, Jill Pecon-Slattery, W. E. Johnson, David Goldman, Stephen J. O'Brien
Biology Faculty Articles

A Lion Lentivirus Related to Feline Immunodeficiency Virus: Epidemiologic and Phylogenetic Aspects, Eric W. Brown, Naoya Yuhki, Craig Packer, Stephen J. O'Brien
Biology Faculty Articles

Nucleotide Sequence Analysis of Puma Lentivirus (PLV-14): Genomic Organization and Relationship to Other Lentiviruses, Raymond Langley, Vanessa Hirsch, Stephen J. O'Brien, Diane Adger-Johnson, Robert M. Goeken, Robert A. Omsted
Biology Faculty Articles

Exchanges of Short Polymorphic DNA Segments Predating Speciation in Feline Major Histocompatibility Complex Class I Genes, Naoya Yuhki, Stephen J. O'Brien
Biology Faculty Articles

Polymorphisms in the 3′ Untranslated Region of the IκB/MAD-3 (NFKBI) Gene Located on Chromosome 14, Damjan Glavac, Metka Ravnik-Glavac, Stephen J. O'Brien, Michael Dean
Biology Faculty Articles

A Role for Molecular Genetics in Biological Conservation, Stephen J. O'Brien
Biology Faculty Articles

Pandas, People and Policy, Stephen J. O'Brien, Pan Wanshi, Lu Zhi
Biology Faculty Articles

Phylogenetic Associations of Human and Simian T-Cell Leukemia/Lymphotropic Virus Type I Strains: Evidence for Interspecies Transmission, Igor J. Koralnik, Enzo Boeri, W. Carl Saxinger, Anita Lo Monico, Jake Fullen, Antoine Gessain, Hong-Guang Guo, Robert C. Gallo, Phillip Markham, Vaniambadi Kalyanaraman, Vanessa Hirsch, Jonathan Allan, Krishna Murthy, Patricia Alford, Jill Pecon-Slattery, Stephen J. O'Brien, Genoveffa Ranchini
Biology Faculty Articles

Genetic and Phylogenetic Analyses of Endangered Species, Stephen J. O'Brien
Biology Faculty Articles

Comparative Genomics: The Next Generation, Leslie A. Lyons, M. M. Raymond, Stephen J. O'Brien
Biology Faculty Articles

Linkage Disequilibrium in Admixed Populations: Applications in Gene Mapping, D. Briscoe, J. Claiborne Stephens, Stephen J. O'Brien
Biology Faculty Articles

Genomes and Evolution - Editorial Overview, Stephen J. O'Brien, Michael T. Clegg
Biology Faculty Articles

Chromosomal Mapping of Two Members of the Human Glutamate Dehydrogenase (GLUD) Gene Family to Chromosomes 10q22.3-q23 and Xq22-q23, Nicholas P. Anagnou, H. N. Seuanez, W. S. Modi, Stephen J. O'Brien, J. Papamatheakis, N. K. Moschonas
Biology Faculty Articles

Elephant Seal Genetic Variation and the Use of Simulation Models to Investigate Historical Population Bottlenecks, A. R. Hoelzel, J. Halley, Stephen J. O'Brien, C. Campagna, T. Arnbom, B. Le Boeuf, K. Ralls, G. A. Dover
Biology Faculty Articles

A Common Proviral Integration Region, fit-1, in T-Cell Tumors Induced by Myc-Containing Feline Leukemia Viruses, Hajime Tsujimoto, Ruth Fulton, Yasunobu Matusomoto, Kazuo Nishigaki, Atsuhiko Hasegawa, Atsumi Tsujimoto, Stanley Cevario, Stephen J. O'Brien, Anne Terry, David Onions, James C. Neil
Biology Faculty Articles

Influence of Culture Medium and Protein Supplementation on In Vitro Oocyte Maturation and Fertilization in the Domestic Cat, L. A. Johnston, A. M. Donoghue, Stephen J. O'Brien, David E. Wildt
Biology Faculty Articles

Prevalence of Exposure to Feline Immunodeficiency Virus in Exotic Felid Species, Eric W. Brown, Sriyanie Miththapala, Stephen J. O'Brien
Biology Faculty Articles

Abundant Mitochondrial DNA Variation and World-Wide Population Structure in Humpback Whales, C. S. Baker, A. Perry, J. L. Bannister, M. T. Weinrich, R. B. Abernethy, J. Calambokidis, J. Lien, R. H. Lambertsen, J. Urban Ramirez, O. Vasquez, P. J. Clapham, A. Alling, Stephen J. O'Brien, S. R. Palumbi
Biology Faculty Articles

Population Characteristics of DNA Fingerprints in Humpback Whales (Megaptera novaeangliae), C. S. Baker, Dennis Gilbert, M. T. Weinrich, R. H. Lambertsen, J. Calambokidis, B. McArdle, G. K. Chambers, Stephen J. O'Brien
Biology Faculty Articles

The Genomics Generation, Stephen J. O'Brien
Biology Faculty Articles

The Consequences of Demographic Reduction and Genetic Depletion in the Endangered Florida Panther, Melody E. Roelke, Janice S. Martenson, Stephen J. O'Brien
Biology Faculty Articles

Influence of Day of Oestrus on Egg Viability and Comparative Efficiency of In Vitro Fertilization in Domestic Cats in Natural or Gonadotrophin-Induced Oestrus, A. M. Donoghue, L. A. Johnston, K. L. Goodrowe, Stephen J. O'Brien, David E. Wildt
Biology Faculty Articles

Dating the Genetic Bottleneck of the African Cheetah, Marilyn Menotti-Raymond, Stephen J. O'Brien
Biology Faculty Articles

Anchored Reference Loci for Comparative Genome Mapping in Mammals, Stephen J. O'Brien, James E. Womack, Leslie A. Lyons, Karen J. Moore, Nancy A. Jenkins, Neal G. Copeland
Biology Faculty Articles

Editorial overview, Stephen J. O'Brien, Michael T. Clegg
Biology Faculty Articles

Hormonal Characteristics of Free-Ranging Female Lions (Panthera leo) of the Serengeti Plains and Ngorongoro Crater, J. L. Brown, Mitch E. Bush, Craig Packer, A. E. Pusey, S. L. Monfort, Stephen J. O'Brien, D. L. Janssen, David E. Wildt
Biology Faculty Articles

Two-Dimensional Protein Electrophoresis in Phylogenetic Studies, David Goldman, Stephen J. O'Brien
Biology Faculty Articles

Genetic Characterization of Parental Cell Lines and Biochemical Analysis of Somatic Cell Hybrids Between Mouse (RAG) Cells and Fibroblasts of Ateles paniscus chamek (Primates, Platyrrhini), Hector Seuanez, Gilda Alves, Stephen J. O'Brien
Biology Faculty Articles

Molecular Cloning and Chromosomal Mapping of Feline p53 Tumor Suppressor Gene, Masaru Okuda, Akiko Umeda, Yasunobu Matsumoto, Yasuyuki Momoi, Toshihiro Watari, Ryo Goitsuka, Stephen J. O'Brien, Hajime Tsujimoto, Atsuhiko Hasegawa
Biology Faculty Articles

Exposure to FIV and FIPV in Wild and Captive Cheetahs, Eric W. Brown, Robert A. Olmsted, Janice S. Martenson, Stephen J. O'Brien
Biology Faculty Articles

Feline Arylsulfatase B (ARSB): Isolation and Expression of the cDNA, Comparison with Human ARSB, and Gene Localization to Feline Chromosome A1, Christine E. Jackson, Naoya Yuhki, Robert J. Desnick, M. E. Haskins, Stephen J. O'Brien, Edward H. Shuchman
Biology Faculty Articles

Worldwide Prevalence of Lentivirus Infection in Wild Feline Species: Epidemiologic and Phylogenetic Aspects, Robert A. Olmstead, Raymond Langley, Melody E. Roelke, Robert M. Goeken, Diane Adger-Johnson, Julie P. Goff, John P. Albert, Craig Packer, M. Karen Laurenson, Tim M. Caro, Lue Scheepers, David E. Wildt, Mitchell Bush, Janice S. Martenson, Stephen J. O'Brien
Biology Faculty Articles

Emergence of the Keratinocyte Growth Factor Multigene Family During the Great Ape Radiation, Michael J. Kelley, Michael Pech, Hector Seuanez, Jeffrey S. Rubin, Stephen J. O'Brien, Stuart A. Aaronson
Biology Faculty Articles

Molecular Phylogenetic Inference from Saber-Toothed Cat Fossils of Rancho La Brea, Dianne N. Janczewski, Naoya Yuhki, Dennis A. Gilbert, George T. Jefferson, Stephen J. O'Brien
Biology Faculty Articles

Genomic Dispersal of the ets Gene Family during Metazoan Evolution, J. A. Lautenberger, L. A. Burdett, M. A. Gunnell, S. Qi, D. K. Watson, Stephen J. O'Brien, T. S. Papas
Biology Faculty Articles

Estimation of Heterozygosity for Single-Probe Multilocus DNA Fingerprints, J. Claiborne Stephens, Dennis Gilbert, Naoya Yuhki, Stephen J. O'Brien
Biology Faculty Articles

Genetic Erosion: A Global Dilemma, Stephen J. O'Brien
Biology Faculty Articles

Adaptive Chaos and AIDS, Stephen J. O'Brien, Dean L. Mann
Biology Faculty Articles

Detecting Single Base Substitutions as Heteroduplex Polymorphisms, Marga Belle White, Magda Carvalho, David Derse, Stephen J. O'Brien, Michael Dean
Biology Faculty Articles

BEK, a Receptor for Multiple Members of the Fibroblast Growth Factor (FGF) Family, Maps to Human Chromosome 10q25.3----q26, C. A. Dionne, W. S. Modi, G. Crumley, Stephen J. O'Brien, J. Schlessinger, M. Jaye
Biology Faculty Articles

Molecular Cloning, Chromosomal Assignment, and Nucleotide Sequence of the Feline Homeobox HOX3A, Ryuichi Masuda, Naoya Yuhki, Stephen J. O'Brien
Biology Faculty Articles

Linkage Mapping of Human Polymorphic Proteins Identified by Two-Dimensional Electrophoresis, David Goldman, Stephen J. O'Brien, Susan Lucas-Derse, Michael Dean
Biology Faculty Articles

Mapping of the Gene Encoding the α Subunit of the Stimulatory G Protein of Adenylyl Cyclase (GNAS1) to 20q13.2 → q13.3 in Human by In Situ Hybridization, Michael A. Levine, William Modi, Stephen J. O'Brien
Biology Faculty Articles

Genetic Mapping of the β1 GABA Receptor Gene to Human Chromosome 4, Using a Tetranucleotide Repeat Polymorphism, Michael Dean, Susan Lucas-Derse, Annabel Bolos, Stephen J. O'Brien, Ewen F. Kirkness, Claire M. Fraser, David Goldman
Biology Faculty Articles

Analytical DNA Fingerprinting in Lions: Parentage, Genetic Diversity, and Kinship, Dennis Gilbert, Craig Packer, A. E. Pusey, J. Claiborne Stephens, Stephen J. O'Brien
Biology Faculty Articles

Ghetto Legacy: Can the High Incidence of Tay-Sachs Disease in Ashkenazi Jews be Linked to Historic Epidemics of Tuberculosis in Industrial European Cities?, Stephen J. O'Brien
Biology Faculty Articles

Influence of Temperature and Gas Atmosphere on In-Vitro Fertilization and Embryo Development in Domestic Cats, L. A. Johnston, A. M. Donoghue, Stephen J. O'Brien, David E. Wildt
Biology Faculty Articles

Detecting High-Resolution Polymorphisms in Human Coding Loci by Combining PCR and Single-Strand Conformation Polymorphism (SSCP) Analysis, Shirley E. Poduslo, Michael Dean, Ulricke Kolch, Stephen J. O'Brien
Biology Faculty Articles

Species Hybridization and Protection of Endangered Animals, George D. Amato, Ronald M. Nowak, Stephen J. O'Brien, Ernst Mayr, Eric R. Glitzenstein
Biology Faculty Articles

Mammalian Genome Mapping: Lessons and Prospects, Stephen J. O'Brien
Biology Faculty Articles

Case Study of a Population Bottleneck: Lions of the Ngorongoro Crater, Craig Packer, A. E. Pusey, H. Rowley, D. A. Gilbert, Janice S. Martenson, Stephen J. O'Brien
Biology Faculty Articles

Linkage Mapping of the Human CSF2 and IL3 Genes, Elena I. Frolova, Gregory M. Dolganov, Ilya A. Mazo, Dmitzy V. Smirnov, Paul Copeland, Stephen J. O'Brien, Michael Dean
Biology Faculty Articles

A Molecular Genetic Analysis of Kinship and Cooperation in African Lions, Craig Packer, Dennis A. Gilbert, A. E. Pusey, Stephen J. O'Brien
Biology Faculty Articles

Semen Characteristics in Free-Living Koalas (Phascolarctos cinereus), David E. Wildt, Mitch E. Bush, Stephen J. O'Brien, N. D. Murray, A. Taylor, J. A. M. Graves
Biology Faculty Articles

Culture Medium and Protein Supplementation Influence In Vitro Fertilization and Embryo Development in the Domestic Cat, L. A. Johnston, A. M. Donoghue, Stephen J. O'Brien, David E. Wildt
Biology Faculty Articles

Molecular Distance and Divergence Time in Carnivores and Primates, R. K. Wayne, B. Van Valkenburgh, Stephen J. O'Brien
Biology Faculty Articles

Bureaucratic Mischief: Recognizing Endangered Species and Subspecies, Stephen J. O'Brien, Ernst Mayr
Biology Faculty Articles

Response [3], Stephen J. O'Brien, Ernst Mayr
Biology Faculty Articles

Report of the Committee on Comparative Gene Mapping, Stephen J. O'Brien, J. A. M. Graves
Biology Faculty Articles

Genetic Variation in Sri Lankan Leopards, S. Miththapala, J. Seidensticker, Lyndsay G. Phillips, K. L. Goodrowe, S. B. U. Fernando, L. Forman, Stephen J. O'Brien
Biology Faculty Articles

Developmental Changes in Pituitary–Gonadal Function in Free-Ranging Lions (Panthera leo leo) of the Serengeti Plains and Ngorongoro Crater, J. L. Brown, Mitch E. Bush, Craig Packer, A. E. Pusey, S. L. Monfort, Stephen J. O'Brien, D. L. Janssen, David E. Wildt
Biology Faculty Articles

The Lake Casitas Wild Mouse: Evolving Genetic Resistance to Retroviral Disease, Murray B. Gardner, Christine Kozak, Stephen J. O'Brien
Biology Faculty Articles

Dissociative Anaesthesia in Free-Ranging Male Koalas and Selected Marsupials in Captivity, Mitch E. Bush, J. A. M. Graves, Stephen J. O'Brien, David E. Wildt
Biology Faculty Articles

Chromosomal Localization of the Genes Encoding Two Forms of the G Protein β Polypeptide, β1 and β3, in Man, Michael A. Levine, William Modi, Stephen J. O'Brien
Biology Faculty Articles

Sequence and Chromosomal Location of the I-309 Gene. Relationship to Genes Encoding a Family of Inflammatory Cytokines, Michael D. Miller, Stephen D. Wilson, Martin E. Dorf, Hector Seuanez, Stephen J. O'Brien, Michael S. Krangel
Biology Faculty Articles

Molecular Genetic Divergence of Orang Utan (Pongo pygmaeus) Subspecies Based on Isozyme and Two-Dimensional Gel Electrophoresis, Dianne N. Janczewski, David Goldman, Stephen J. O'Brien
Biology Faculty Articles

Application of DNA Fingerprints for Cell-Line Individualization, Dennis A. Gilbert, Yvonne Reid, Mitchell H. Gail, David Pee, Christine White, Robert J. Hay, Stephen J. O'Brien
Biology Faculty Articles

DNA Recombination and Natural Selection Pressure Sustain Genetic Sequence Diversity of the Feline MHC Class I Genes, Naoya Yuhki, Stephen J. O'Brien
Biology Faculty Articles

An Oncogenic Chromosome 8-9 Gene Fusion Isolated Following Transfection of Human Ovarian Carcinoma Cell Line DNA, D. Halverson, W. S. Modi, M. Dean, E. P. Gelmann, K. J. Dunn, D. Clanton, M. Oskarsson, Stephen J. O'Brien, D. G. Blair
Biology Faculty Articles

Prevalence and Implications of Feline Coronavirus Infections of Captive and Free-Ranging Cheetahs (Acinonyx jubatus), J. L. Heeney, J. F. Evermann, A. J. McKeirnan, L. Marker-Kraus, M. E. Roelke, M. Bush, D. E. Wildt, D. G. Meltzer, L. Colly, J. Lukas, V. J. Manton, T. Caro, Stephen J. O'Brien
Biology Faculty Articles

Genetic Fingerprinting Reflects Population Differentiation in the California Channel Island Fox, Dennis A. Gilbert, N. Lehman, Stephen J. O'Brien, Robert K. Wayne
Biology Faculty Articles

Large Sequence Divergence Among Mitochondrial DNA Genotypes Within Populations of Eastern African Black-Backed Jackals, Robert K. Wayne, A. Meyer, N. Lehman, B. Van Valkenburgh, P. W. Kat, T. K. Fuller, D. Girman, Stephen J. O'Brien
Biology Faculty Articles

Influence of Seasonal Migration on Geographic Distribution of Mitochondrial DNA Haplotypes in Humpback Whales, C. S. Baker, S. R. Palumbi, R. H. Lambertsen, M. T. Weinrich, J. Calambokidis, Stephen J. O'Brien
Biology Faculty Articles

Chromosome Assignment by Polymerase Chain Reaction Techniques: Assignment of the Oncogene FGF-5 to Human Chromosome 4, C. A. Dionne, R. Kaplan, H. N. Seuanez, Stephen J. O'Brien, M. Jaye
Biology Faculty Articles

Report of the Committee on Comparative Gene Mapping, Stephen J. O'Brien, J. A. Graves
Biology Faculty Articles

Monocyte-Derived Neutrophil Chemotactic Factor (MDNCF/IL-8) Resides in a Gene Cluster along with Several Other Members of the Platelet Factor 4 Gene Superfamily, William Modi, Michael Dean, Hector Seuanez, Naofumi Mukaida, Kouji Matsushima, Stephen J. O'Brien
Biology Faculty Articles

DNA Variation of the Mammalian Major Histocompatibility Complex Reflects Genomic Diversity and Population History, Naoya Yuhki, Stephen J. O'Brien
Biology Faculty Articles

The Human Chromogranin A Gene: Chromosome Assignment and RFLP Analysis., William Modi, Michael A. Levine, Hector Seuanez, Michael Dean, Stephen J. O'Brien
Biology Faculty Articles

Cloning and Comparative Mapping of a Human Class III (X) Alcohol Dehydrogenase cDNA, P. Rathna Giri, Jane F. Krug, Christine Kozak, Tamyra Moretti, Stephen J. O'Brien, Hector Seuanez, David Goldman
Biology Faculty Articles

Mapping of PRM 1 to Human Chromosome 16 and Tight Linkage of Prm-1 and Prm-2 on Mouse Chromosome 16, Roger Reeves, John Gearhart, N. B. Hecht, P. Yelick, P. Johnson, Stephen J. O'Brien
Biology Faculty Articles

Genetic and Morphological Divergence Among Sympatric Canids, Robert K. Wayne, B. Van Valkenburgh, P. W. Kat, T. K. Fuller, W. E. Johnson, Stephen J. O'Brien
Biology Faculty Articles

A Glutaminase (Gls) Gene Maps to Mouse Chromosome 1, Rat Chromosome 9, and Human Chromosome 2, Beverly Mock, Christine Kozak, Michael F. Seldin, Naomi Ruff, Lawrence D'Hoostelaere, Claude Szpirer, Hector Seuanez, Stephen J. O'Brien, Carl Banner
Biology Faculty Articles

The Human Homolog of the Moloney Leukemia Virus Integration 2 Locus (MLVI2) Maps to Band p14 of Chromosome 5, Nicholas P. Anagnou, Agathe Economou-Pachnis, Stephen J. O'Brien, William S. Modi, Arthur W. Nienhuis, Philip N. Tsichlis
Biology Faculty Articles

Chromosomal Localization of Nucleic Acid-Binding Proteins by Affinity Mapping: Assignment of the IRE-Binding Protein Gene to Human Chromosome 9, Matthias W. Hentze, Hector Seuanez, Stephen J. O'Brien, Joe B. Harford, Richard D. Klausner
Biology Faculty Articles

Origin of the HIV-Susceptible Human CD4+ Cell Line H9, Dean L. Mann, Stephen J. O'Brien, Dennis A. Gilbert, Yvonne Reid, Mikulas Popovic, Elizabeth Read-Connole, Robert C. Gallo, Adi F. Gazdar
Biology Faculty Articles

Plausible Alternatives to Bottlenecks to Explain Reduced Genetic Diversity - Reply from S.I. O'Brien, Stephen J. O'Brien
Biology Faculty Articles

Comparative Features of a Coronavirus Isolated from a Cheetah with Feline Infectious Peritonitis, J. F. Evermann, J. L. Heeney, A. J. McKeirnan, Stephen J. O'Brien
Biology Faculty Articles

The t(11;14)(p15;q11) in a T-Cell Acute Lymphoblastic Leukemia Cell Line Activates Multiple Transcripts, Including Ttg-1, a Gene Encoding a Potential Zinc Finger Protein, Elizabeth A. McGuire, Richard D. Hockett, Karen M. Pollock, Marty F. Bartholdi, Stephen J. O'Brien, Stanley J. Korsmeyer
Biology Faculty Articles

Characterization of MHC cDNA Clones in the Domestic Cat. Diversity and Evolution of Class I Genes, Naoya Yuhki, G. F. Heidecker, Stephen J. O'Brien
Biology Faculty Articles

Assignment of the Feline α-L-Iduronidase Gene to Chromosome D4, Edward H. Shuchman, Stephen J. O'Brien, Robert J. Desnick
Biology Faculty Articles

Molecular Genetic-Distance Estimates Among the Ursidae as Indicated by One- and Two-Dimensional Protein Electrophoresis, David Goldman, P. Rathnagiri, Stephen J. O'Brien
Biology Faculty Articles

Genetic Characterization of FLA, the Cat Major Histocompatibility Complex, Cheryl Winkler, Alan Schultz, Stephen J. O'Brien
Biology Faculty Articles

The Human Endonexin II (ENX2) Gene Is Located at 4q28----q32, William Modi, H. N. Seuanez, M. Jaye, H. J. Haigler, R. Kaplan, Stephen J. O'Brien
Biology Faculty Articles

Report of the Committee on Comparative Mapping, P. A. Lalley, M. T. Davisson, J. A. Graves, Stephen J. O'Brien, J. E. Womack, T. H. Roderick, N. Creau-Goldberg, A. L. Hillyard, D. P. Doolittle, J. A. Rogers
Biology Faculty Articles

Molecular Analysis of the Human Serum Amyloid a (SAA) Gene Family, G. H. Sack Jr., C. C. Talbot Jr., Hector Seuanez, Stephen J. O'Brien
Biology Faculty Articles

Geneticists Converge on Divergent Mammals - an Overview of Comparative Mammalian Genetics, Stephen J. O'Brien, J. A. M. Graves
Biology Faculty Articles

DNA-DNA Hybridization Studies and Marsupial Phylogeny, M. Westerman, D. N. Janczewski, Stephen J. O'Brien
Biology Faculty Articles

Captive Breeding of the Cheetah (Acinonyx jubatus) in North American Zoos (1871–1986), L. Marker, Stephen J. O'Brien
Biology Faculty Articles

Feline Lymphomas: Immunological and Cytochemical Characterization, J. L. Rojko, G. J. Kociba, J. L. Abkowitz, K. L. Hamilton, W. D. Hardy Jr., J. N. Ihle, Stephen J. O'Brien
Biology Faculty Articles

Molecular Cloning and Chromosomal Localization of the Human T-Cell Receptor ζ Chain: Distinction from the Molecular CD3 Complex, Allan M. Weissman, Damon Hou, David G. Orloff, William S. Modi, Hector Seuanez, Stephen J. O'Brien, Richard D. Klausner
Biology Faculty Articles

The Human erg Gene Maps to Chromosome 21, Band q22: Relationship to the 8; 21 Translocation of Acute Myelogenous Leukemia, V. N. Rao, W. S. Modi, H. D. Drabkin, D. Patterson, Stephen J. O'Brien, T. S. Papas, E. S. Reddy
Biology Faculty Articles

Barbara Kuhn, Stephen J. O'Brien
Biology Faculty Articles

Interactive Influence of Infectious Disease and Genetic Diversity in Natural Populations, Stephen J. O'Brien, J. F. Evermann
Biology Faculty Articles

Biological and Pathological Consequences of Feline Infectious Peritonitis Virus Infection in the Cheetah, J. F. Evermann, J. L. Heeney, M. E. Roelke, A. J. McKeirnan, Stephen J. O'Brien
Biology Faculty Articles

Developmental Competence of Domestic Cat Follicular Oocytes after Fertilization In Vitro, K. L. Goodrowe, R. J. Wall, Stephen J. O'Brien, P. M. Schmidt, David E. Wildt
Biology Faculty Articles

The GLI-Kruppel Family of Human Genes, John M. Ruppert, Kenneth W. Kinzler, Albert J. Wong, Sandra H. Bigner, Fa-Ten Kao, Martha L. Law, Hector Seuanez, Stephen J. O'Brien, Bert Vogelstein
Biology Faculty Articles

Molecular Characterization and Genetic Mapping of Class I and Class II MHC Genes of the Domestic Cat, Naoya Yuhki, Stephen J. O'Brien
Biology Faculty Articles

Chromosomal Localization of the Human Interleukin 1α (IL-1α) Gene, William Modi, Akinori Masuda, Masaaki Yamada, Joost J. Oppenheim, Kouji Matsushima, Stephen J. O'Brien
Biology Faculty Articles

Chromosomal Mapping of Lysosomal Enzyme Structural Genes in the Domestic Cat, Dennis A. Gilbert, John S. O'Brien, Stephen J. O'Brien
Biology Faculty Articles

The κ-Deleting Element: Germline and Rearranged, Duplicated and Dispersed Forms, Winfried B. Graninger, Paula L. Goldman, Cynthia C. Morton, Stephen J. O'Brien, Stanley J. Korsmeyer
Biology Faculty Articles

Report of the Committee on Comparative Mapping, P. A. Lalley, M. T. Davisson, J. A. Graves, Stephen J. O'Brien, T. H. Roderick, D. P. Doolittle, A. L. Hillyard
Biology Faculty Articles

Evolution of Heterochromatin-Associated Satellite DNA Loci in Felids and Canids (Carnivora), T. G. Fanning, W. S. Modi, R. K. Wayne, Stephen J. O'Brien
Biology Faculty Articles

Chromosomal Localization of Satellite DNA Sequences Among 22 Species of Felids and Canids (Carnivora), William Modi, T. G. Fanning, R. K. Wayne, Stephen J. O'Brien
Biology Faculty Articles

Chromosomal Localization and Racial Distribution of the Polymorphic Human Dihydrofolate Reductase Pseudogene (DHFRP1), Nicholas P. Anagnou, S. E. Antonarakis, Stephen J. O'Brien, William S. Modi, Arthur W. Nienhuis
Biology Faculty Articles

Allozyme Divergence Within the Canidae, Robert K. Wayne, Stephen J. O'Brien
Biology Faculty Articles

Partial Structure of the Human α2(IV) Collagen Chain and Chromosomal Localization of the Gene (COL4A2), Paul D. Killen, Clair A. Francomano, Yoshihiko Yamada, William Modi, Stephen J. O'Brien
Biology Faculty Articles

The Ancestry of the Giant Panda, Stephen J. O'Brien
Biology Faculty Articles

Chromosomal Localization of the met Proto-Oncogene in the Mouse and Cat Genome, Michael Dean, Christine Kozak, Joan Robbins, Robert Callahan, Stephen J. O'Brien, George F. Vande Woude
Biology Faculty Articles

Isolation of a cDNA Clone for the Human Laminin-B1 Chain and its Gene Localization, Michael Jaye, William Modi, George A. Ricca, Robert Mudd, Inc-Ming Chiu, Stephen J. O'Brien, William N. Drohan
Biology Faculty Articles

Reproductive and Genetic Consequences of Founding Isolated Lion Populations, David E. Wildt, Mitchell Bush, K. L. Goodrowe, Craig Packer, A. E. Pusey, J. L. Brown, P. Joslin, Stephen J. O'Brien
Biology Faculty Articles

Molecular Analysis of Integrated Human Papillomavirus 16 Sequences in the Cervical Cancer Cell Line SiHa, Mostafa K. El Awady, Jeffrey B. Kaplan, Stephen J. O'Brien, Robert D. Burk
Biology Faculty Articles

The Interleukin 3 Gene is Located on Human Chromosome 5 and is Deleted in Myeloid Leukemias with a Deletion of 5q, MIchelle M. LeBeau, Neal D. Epstein, Stephen J. O'Brien, Arthur W. Nienhuis, Yu-Chung Yang, Steven C. Clark, Janet D. Rowley
Biology Faculty Articles

A Novel Form of Human Polymorphism Involving the hDHFR-ψ1 Pseudogene Identifies Three RFLPs, Nicholas P. Anagnou, S. E. Antonarakis, Stephen J. O'Brien, Arthur W. Nienhuis
Biology Faculty Articles

A Molecular Phylogeny of the Hominoid Primates as Indicated by Two-Dimensional Protein Electrophoresis, David Goldman, P. Rathna Giri, Stephen J. O'Brien
Biology Faculty Articles

The Human Myelin-Basic-Protein Gene: Chromosomal Localization and RFLP Analysis, John Kamholz, Richard Spielman, William Modi, Stephen J. O'Brien, Robert Lazzarini
Biology Faculty Articles

Identification of an Amplified, Highly Expressed Gene in a Human Glioma, Kenneth W. Kinzler, Sandra H. Bigner, Darrell D. Bigner, Jeffrey M. Trent, Martha L. Law, Stephen J. O'Brien, Albert J. Wong, Bert Vogelstein
Biology Faculty Articles

Similarity in Ejaculate-Endocrine Characteristics in Captive Versus Free-Ranging Cheetahs of Two Subspecies, David E. Wildt, Stephen J. O'Brien, J. G. Howard, T. M. Caro, M. E. Roelke, J. L. Brown, Mitch E. Bush
Biology Faculty Articles

A New Moderately Repetitive DNA Sequence Family of Novel Organization, Neal D. Epstein, S. Karlsson, Stephen J. O'Brien, William S. Modi, A. Moulton, Arthur W. Nienhuis
Biology Faculty Articles

The Future of the Giant Panda, Stephen J. O'Brien, John A. Knight
Biology Faculty Articles

Report of the Committee on Comparative Mapping, P. A. Lalley, Stephen J. O'Brien, N. Creau-Goldberg, M. T. Davisson, T. H. Roderick, G. Echard, J. E. Womack, J. M. Graves, D. P. Doolittle, J. N. Guidi
Biology Faculty Articles

A Comparative Chromosome Banding Analysis of the Ursidae and Their Relationship to Other Carnivores, William G. Nash, Stephen J. O'Brien
Biology Faculty Articles

Cytogenetic Methodologies for Gene Mapping and Comparative Analyses in Mammalian Cell Culture Systems, William Modi, William Nash, Anna C. Ferrari, Stephen J. O'Brien
Biology Faculty Articles

Evidence for African Origins of Founders of the Asiatic Lion Species Survival Plan, Stephen J. O'Brien, P. Joslin, G. L. Smith III, R. Wolfe, N. Schaffer, E. Heath, J. Ott-Joslin, P. P. Rawal, K. K. Bhattacharjee, Janice S. Martenson
Biology Faculty Articles

Chromosomal Evolution of the Canidae. II. Divergence from the Primitive Carnivore Karyotype, R. K. Wayne, W. G. Nash, Stephen J. O'Brien
Biology Faculty Articles

Chromosomal Evolution of the Canidae. I. Species with High Diploid Numbers, R. K. Wayne, W. G. Nash, Stephen J. O'Brien
Biology Faculty Articles

Analysis of Fluctuating Asymmetry in Cheetahs, William S. Modi, Robert K. Wayne, Stephen J. O'Brien
Biology Faculty Articles

East African Cheetahs: Evidence for Two Population Bottlenecks?, Stephen J. O'Brien, David E. Wildt, Mitchell Bush, Timothy M. Caro, Clare Fitzgibbon, Issa Aggundey, Richard E. Leakey
Biology Faculty Articles

Chromosomal Mapping of Beta-Globin and Albino Loci in the Domestic Cat: a Conserved Mammalian Chromosome Group, Stephen J. O'Brien, M. E. Haskins, Cheryl Winkler, William G. Nash, D. F. Patterson
Biology Faculty Articles

Genetic Characterization of Human c-rel Sequences, Elise Brownell, Stephen J. O'Brien, William Nash, Nancy Rice
Biology Faculty Articles

Cloning, Characterization, Expression, and Chromosomal Localization of a Human Ferritin Heavy-Chain Gene, Matthias W. Hentze, Stephen Keim, Panos Papadopoulos, Stephen J. O'Brien, William Modi, Jim Drysdale, William J. Leonard, Joe B. Harford, Richard D. Klausner
Biology Faculty Articles

Dynamic and Nonspecific Dispersal of Human T-Cell Leukemia/Lymphoma Virus Type-I Integration in Cultured Lymphoma Cells, Leonard J. Seigel, William G. Nash, Bernard J. Poiesz, Janet L. Moore, Stephen J. O'Brien
Biology Faculty Articles

Genetic Variation Within and Among Lion Tamarins, Lisa Forman, Devra G. Kleiman, R. Mitchell Bush, James M. Dietz, Jonathan D. Ballou, Lyndsay G. Phillips, Adelmar F. Coimbra-Filho, Stephen J. O'Brien
Biology Faculty Articles