Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species, David Haussler, Stephen J. O'Brien, Oliver A. Ryder, F. Keith Barker, Michele Clamp, Andrew J. Crawford, Robert Hanner, Olivier Hanotte, Warren E. Johnson, Jimmy A. McGuire, Webb Miller, Robert W. Murphy, William J. Murphy, Frederick H. Sheldon, Barry Sinervo, Byrappa Venkatesh, Edward O. Wiley, Fred W. Allendorf, George Amato, C. Scott Baker, Aaron Bauer, Albano Beja-Pereira, Eldredge Bermingham, Giacomo Bernardi, Cibele R. Bonvicino, Sydney Brenner, Terry Burke, Joel Cracraft, Mark Diekhans
Stephen O'Brien

Ultracontinuous single haplotype genome assemblies for the domestic cat (Felis catus) and Asian leopard cat (Prionailurus bengalensis), Kevin R. Bredemeyer, Andrew J. Harris, Gang Li, Le Zhao, Nicole M. Foley, Melody E. Roelke-Parker, Stephen James O'Brien, Leslie A. Lyons, Wesley C. Warren, William J. Murphy
Stephen O'Brien

Ultracontinuous single haplotype genome assemblies for the domestic cat (Felis catus) and Asian leopard cat (Prionailurus bengalensis), Kevin R. Bredemeyer, Andrew J. Harris, Gang Li, Le Zhao, Nicole M. Foley, Melody E. Roelke-Parker, Stephen James O'Brien, Leslie A. Lyons, Wesley C. Warren, William J. Murphy
Biology Faculty Articles

A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination, Gang Li, LaDeana W. Hillier, Robert A. Grahn, Aleksey V. Zimin, Victor A. David, Marilyn Menotti-Raymond, Rondo Middleton, Steven S. Hannah, Sher L. Hendrickson, Alexey Makunin, Stephen J. O'Brien, Patrick Minx, Richard K. Wilson, Leslie A. Lyons, Wesley C. Warren, William J. Murphy
Stephen O'Brien

Comparative Analysis of the Domestic Cat Genome Reveals Genetic Signatures Underlying Feline Biology and Domestication, Michael J. Montague, Gang Li, Barbara Gandolfi, Razib Khan, Bronwen L. Aken, Steven M. J. Searle, Patrick Minx, LaDeana W. Hillier, Daniel C. Koboldt, Brian W. Davis, Carlos A. Driscoll, Christina S. Barr, Kevin Blackistone, Javier Quilez, Belen Lorente-Galdos, Tomas Marques-Bonet, Can Alkan, Gregg W. C. Thomas, Matthew W. Hahn, Marilyn Menotti-Raymond, Stephen James O'Brien, Richard K. Wilson, Leslie A. Lyons, William J. Murphy, Wesley C. Warren
Stephen O'Brien

Mitogenomic Sequences Support a North–South Subspecies Subdivision within Solenodon paradoxus, Adam L. Brandt, Kirill Grigorev, Yashira M. Afanador-Hernandez, Liz A. Paulino, William J. Murphy, Adrell Nunez, Aleksey Komissarov, Jessica R. Brandt, Pavel Dobrynin, J. David Hernandez-Martich, Roberta Maria, Stephen J. O'Brien, Luis Rodriguez, Juan C. Martinez-Cruzado, T. K. Oleksyk, Alfred L. Roca
Stephen O'Brien

Mitogenomic Sequences Support a North–South Subspecies Subdivision within Solenodon paradoxus, Adam L. Brandt, Kirill Grigorev, Yashira M. Afanador-Hernandez, Liz A. Paulino, William J. Murphy, Adrell Nunez, Aleksey Komissarov, Jessica R. Brandt, Pavel Dobrynin, J. David Hernandez-Martich, Roberta Maria, Stephen J. O'Brien, Luis Rodriguez, Juan C. Martinez-Cruzado, T. K. Oleksyk, Alfred L. Roca
Biology Faculty Articles

A Radiation Hybrid Map of the Cat Genome: Implications for Comparative Mapping, William J. Murphy, Shan Sun, Zhang-Qun Chen, Naoya Yuhki, Deborah Hirschmann, Marilyn Menotti-Raymond, Stephen J. O'Brien
Stephen O'Brien

An ∼140-kb Deletion Associated with Feline Spinal Muscular Atrophy Implies an Essential LIX1 Function for Motor Neuron Survival, John C. Fyfe, Marilyn Menotti-Raymond, Victor A. David, Lars Brichta, Alejandro A. Schaffer, R. Agarwala, William J. Murphy, William J. Wedemeyer, Brittany L. Gregory, Bethany G. Buzzell, Meghan C. Drummond, Brunhilde Wirth, Stephen J. O'Brien
Stephen O'Brien

Canine and Feline Parvoviruses Can Use Human or Feline Transferrin Receptors to Bind, Enter, and Infect Cells, John S. L. Parker, William J. Murphy, Dai Wang, Stephen J. O'Brien, Colin R. Parrish
Stephen O'Brien

Extensive Conservation of Sex Chromosome Organization Between Cat and Human Revealed by Parallel Radiation Hybrid Mapping, William J. Murphy, Shan Sun, Zhang-Qun Chen, Jill Pecon-Slattery, Stephen J. O'Brien
Stephen O'Brien

Initial Sequence and Comparative Analysis of the Cat Genome, J. U. Pontius, James C. Mullikin, Douglas R. Smith, Kerstin Lindblad-Toh, Sante Gnerre, Michele Clamp, Jean Chang, R. Stephens, Beena A. Neelam, Natalia Volfovsky, Alejandro A. Schaffer, R. Agarwala, Kristina Narfstrom, William J. Murphy, Urs Giger, Alfred L. Roca, Agostinho Antunes, Marilyn Menotti-Raymond, Naoya Yuhki, Jill Pecon-Slattery, Warren E. Johnson, Guillaume Bourque, Glenn Tesler, Stephen J. O'Brien
Stephen O'Brien

Insertional Polymorphisms of Endogenous Feline Leukemia Viruses, Alfred L. Roca, William G. Nash, Joan C. Menninger, William J. Murphy, Stephen J. O'Brien
Stephen O'Brien

Reconstructing the Genomic Architecture of Mammalian Ancestors Using Multispecies Comparative Maps, William J. Murphy, Guillaume Bourque, Glenn Tesler, Pavel Pevzner, Stephen J. O'Brien
Stephen O'Brien

Sequencing the Genome of the Domestic Cat Felis catus, Stephen J. O'Brien, Eric S. Lander, M. E. Haskins, Urs Giger, Niels C. Pederson, David E. Wildt, William J. Murphy, Naoya Yuhki, Marilyn Menotti-Raymond
Stephen O'Brien

A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination, Gang Li, LaDeana W. Hillier, Robert A. Grahn, Aleksey V. Zimin, Victor A. David, Marilyn Menotti-Raymond, Rondo Middleton, Steven S. Hannah, Sher L. Hendrickson, Alexey Makunin, Stephen J. O'Brien, Patrick Minx, Richard K. Wilson, Leslie A. Lyons, Wesley C. Warren, William J. Murphy
Biology Faculty Articles

Comparative Analysis of the Domestic Cat Genome Reveals Genetic Signatures Underlying Feline Biology and Domestication, Michael J. Montague, Gang Li, Barbara Gandolfi, Razib Khan, Bronwen L. Aken, Steven M. J. Searle, Patrick Minx, LaDeana W. Hillier, Daniel C. Koboldt, Brian W. Davis, Carlos A. Driscoll, Christina S. Barr, Kevin Blackistone, Javier Quilez, Belen Lorente-Galdos, Tomas Marques-Bonet, Can Alkan, Gregg W. C. Thomas, Matthew W. Hahn, Marilyn Menotti-Raymond, Stephen James O'Brien, Richard K. Wilson, Leslie A. Lyons, William J. Murphy, Wesley C. Warren
Biology Faculty Articles

Pattern and Timing of Diversification of the Mammalian Order Carnivora Inferred from Multiple Nuclear Gene Sequences, Eduardo Eizirik, William J. Murphy, Klaus-Peter Koepfli, Warren E. Johnson, J. W. Dragoo, Robert K. Wayne, Stephen J. O'Brien
Biology Faculty Articles

Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species, David Haussler, Stephen J. O'Brien, Oliver A. Ryder, F. Keith Barker, Michele Clamp, Andrew J. Crawford, Robert Hanner, Olivier Hanotte, Warren E. Johnson, Jimmy A. McGuire, Webb Miller, Robert W. Murphy, William J. Murphy, Frederick H. Sheldon, Barry Sinervo, Byrappa Venkatesh, Edward O. Wiley, Fred W. Allendorf, George Amato, C. Scott Baker, Aaron Bauer, Albano Beja-Pereira, Eldredge Bermingham, Giacomo Bernardi, Cibele R. Bonvicino, Sydney Brenner, Terry Burke, Joel Cracraft, Mark Diekhans
Biology Faculty Articles

Designing and Optimizing Comparative Anchor Primers for Comparative Gene Mapping and Phylogenetic Inference, William J. Murphy, Stephen J. O'Brien
Biology Faculty Articles

Initial Sequence and Comparative Analysis of the Cat Genome, J. U. Pontius, James C. Mullikin, Douglas R. Smith, Agencourt Bioscience Corporation, Kerstin Lindblad-Toh, Sante Gnerre, Michele Clamp, Jean Chang, R. Stephens, Beena A. Neelam, Natalia Volfovsky, Alejandro A. Schaffer, R. Agarwala, Kristina Narfstrom, William J. Murphy, Urs Giger, Alfred L. Roca, Agostinho Antunes, Marilyn Menotti-Raymond, Naoya Yuhki, Jill Pecon-Slattery, Warren E. Johnson, Guillaume Bourque, Glenn Tesler, NISC Comparative Sequencing Program, Stephen J. O'Brien
Biology Faculty Articles

Gene Conversion Between Mammalian CCR2 and CCR5 Chemokine Receptor Genes: A Potential Mechanism for Receptor Dimerization, Nuria Vazquez-Salat, Naoya Yuhki, Thomas W. Beck, Stephen J. O'Brien, William J. Murphy
Biology Faculty Articles

The Adequacy of Morphology for Reconstructing the Early History of Placental Mammals, Mark S. Springer, Angela Burk-Herrick, Robert Meredith, Eduardo Eizirik, Emma C. Teeling, Stephen J. O'Brien, William J. Murphy
Biology Faculty Articles

A Family Matter: Conclusive Resolution of the Taxonomic Position of the Long-Fingered Bats, Miniopterus, Cassandra M. Miller-Butterworth, William J. Murphy, Stephen J. O'Brien
Biology Faculty Articles

A 1.5-Mb-Resolution Radiation Hybrid Map of the Cat Genome and Comparative Analysis with the Canine and Human Genomes, William J. Murphy, Brian Davis, Victor A. David, R. Agarwala, Alejandro A. Schaffer, A. J. Pearks Wilkerson, Beena A. Neelam, Stephen J. O'Brien, Marilyn Menotti-Raymond
Biology Faculty Articles

An ∼140-kb Deletion Associated with Feline Spinal Muscular Atrophy Implies an Essential LIX1 Function for Motor Neuron Survival, John C. Fyfe, Marilyn Menotti-Raymond, Victor A. David, Lars Brichta, Alejandro A. Schaffer, R. Agarwala, William J. Murphy, William J. Wedemeyer, Brittany L. Gregory, Bethany G. Buzzell, Meghan C. Drummond, Brunhilde Wirth, Stephen J. O'Brien
Biology Faculty Articles

The Late Miocene Radiation of Modern Felidae: A Genetic Assessment, Warren E. Johnson, Eduardo Eizirik, Jill Pecon-Slattery, William J. Murphy, Agostinho Antunes, Emma C. Teeling, Stephen J. O'Brien
Biology Faculty Articles

A Rhesus Macaque Radiation Hybrid Map and Comparative Analysis with the Human Genome, William J. Murphy, R. Agarwala, Alejandro A. Schaffer, Robert M. Stephens, Clarence Smith Jr., Nicole J. Crumpler, Victor A. David, Stephen J. O'Brien
Biology Faculty Articles

Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps, William J. Murphy, Denis M. Larkin, Annelie Everts-van der Wind, Guillaume Bourque, Glenn Tesler, Loretta Auvil, Jonathan E. Beever, Bhanu P. Chowdhary, Francis Galibert, Lisa Gatzke, Christophe Hitte, Stacey N. Meyers, Denis Milan, Elaine A. Ostrander, Greg Pape, Heidi G. Parker, Terje Raudsepp, Margarita B. Rogatcheva, Lawrence B. Schook, Loren C. Skow, Michael Welge, James E. Womack, Stephen J. O'Brien, Pavel Pevzner, Harris A. Lewin
Biology Faculty Articles

Insertional Polymorphisms of Endogenous Feline Leukemia Viruses, Alfred L. Roca, William G. Nash, Joan C. Menninger, William J. Murphy, Stephen J. O'Brien
Biology Faculty Articles

Inherited Motor Neuron Disease in Domestic Cats: A Model of Spinal Muscular Atrophy, Qianchuan He, Charles Lowrie, G. Diane Shelton, Rudy J. Castellani, Marilyn Menotti-Raymond, William J. Murphy, Stephen J. O'Brien, William Swanson, John C. Fyfe
Biology Faculty Articles

The Feline Major Histocompatibility Complex is Rearranged by an Inversion with a Breakpoint in the Distal Class I Region, Thomas W. Beck, Joan C. Menninger, William J. Murphy, William G. Nash, Stephen J. O'Brien, Naoya Yuhki
Biology Faculty Articles

A Molecular Phylogeny for Bats Illuminates Biogeography and the Fossil Record, Emma C. Teeling, Mark S. Springer, Ole Madsen, Paul Bates, Stephen J. O'Brien, William J. Murphy
Biology Faculty Articles

Mammalian Phylogenomics Comes of Age, William J. Murphy, Pavel Pevzner, Stephen J. O'Brien
Biology Faculty Articles

Phylogenetic Assessment of Introns and SINEs Within the Y Chromosome Using the Cat Family Felidae as a Species Tree, Jill Pecon-Slattery, A. J. Pearks Wilkerson, William J. Murphy, Stephen J. O'Brien
Biology Faculty Articles

Mesozoic Origin for West Indian Insectivores, Alfred L. Roca, Gila Kahila Bar-Gal, Eduardo Eizirik, Kristofer M. Helgen, Roberto Maria, Mark S. Springer, Stephen J. O'Brien, William J. Murphy
Biology Faculty Articles

Reconstructing the Genomic Architecture of Mammalian Ancestors Using Multispecies Comparative Maps, William J. Murphy, Guillaume Bourque, Glenn Tesler, Pavel Pevzner, Stephen J. O'Brien
Biology Faculty Articles

Mapping of 53 Loci in American Mink (Mustela vison), S. B. Kuznetsov, N. M. Matveeva, William J. Murphy, Stephen J. O'Brien, O. L. Serov
Biology Faculty Articles

A Dog's Breakfast?, Stephen J. O'Brien, William J. Murphy
Biology Faculty Articles

Nuclear Gene Sequences Confirm an Ancient Link Between New Zealand's Short-Tailed Bat and South American Noctilionoid Bats, Emma C. Teeling, Ole Madsen, William J. Murphy, Mark S. Springer, Stephen J. O'Brien
Biology Faculty Articles

The Origin of Human Chromosome 1 and its Homologs in Placental Mammals, William J. Murphy, Lutz Fronicke, Stephen J. O'Brien, Roscoe Stanyon
Biology Faculty Articles

Placental Mammal Diversification and the Cretaceous-Tertiary Boundary, Mark S. Springer, William J. Murphy, Eduardo Eizirik, Stephen J. O'Brien
Biology Faculty Articles

Second-Generation Integrated Genetic Linkage/Radiation Hybrid Maps of the Domestic Cat (Felis catus), Marilyn Menotti-Raymond, V. A. David, Z. Q. Chen, K. A. Menotti, S. Sun, Alejandro A. Schaffer, R. Agarwala, James F. Tomlin, Stephen J. O'Brien, William J. Murphy
Biology Faculty Articles

Sequencing the Genome of the Domestic Cat Felis catus, Stephen J. O'Brien, Eric S. Lander, M. E. Haskins, Urs Giger, Niels C. Pederson, David E. Wildt, William J. Murphy, Naoya Yuhki, Marilyn Menotti-Raymond
Biology Faculty Articles

The Feline Genome Project, Stephen J. O'Brien, Marilyn Menotti-Raymond, William J. Murphy, Naoya Yuhki
Biology Faculty Articles

Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics, William J. Murphy, Eduardo Eizirik, Stephen J. O'Brien, Ole Madsen, Mark Scally, Christophe J. Douady, Emma Teeling, Oliver A. Ryder, Michael J. Stanhope, Wilfried W. de Jong, Mark S. Springer
Biology Faculty Articles

A Radiation Hybrid Mapping Panel for the Rhesus Macacque, William J. Murphy, J. E. Page, C. Smith Jr., Ronald C. Desrosiers, Stephen J. O'Brien
Biology Faculty Articles

Integration of the Feline Radiation Hybrid and Linkage Maps, Shan Sun, William J. Murphy, Marilyn Menotti-Raymond, Stephen J. O'Brien
Biology Faculty Articles

On Choosing Mammalian Genomes for Sequencing, Stephen J. O'Brien, Eduardo Eizirik, William J. Murphy
Biology Faculty Articles

Canine and Feline Parvoviruses Can Use Human or Feline Transferrin Receptors to Bind, Enter, and Infect Cells, John S. L. Parker, William J. Murphy, Dai Wang, Stephen J. O'Brien, Colin R. Parrish
Biology Faculty Articles

Molecular Dating and Biogeography of the Early Placental Mammal Radiation, Eduardo Eizirik, William J. Murphy, Stephen J. O'Brien
Biology Faculty Articles

Molecular Phylogenetics and the Origins of Placental Mammals, William J. Murphy, Eduardo Eizirik, Warren E. Johnson, Ya Ping Zhang, Oliver A. Ryder, Stephen J. O'Brien
Biology Faculty Articles

A Radiation Hybrid Map of the Cat Genome: Implications for Comparative Mapping, William J. Murphy, Shan Sun, Zhang-Qun Chen, Naoya Yuhki, Deborah Hirschmann, Marilyn Menotti-Raymond, Stephen J. O'Brien
Biology Faculty Articles

Patterns of Diversity Among SINE Elements Isolated from Three Y-Chromosome Genes in Carnivores, Jill Pecon-Slattery, William J. Murphy, Stephen J. O'Brien
Biology Faculty Articles

Extensive Conservation of Sex Chromosome Organization Between Cat and Human Revealed by Parallel Radiation Hybrid Mapping, William J. Murphy, Shan Sun, Zhang-Qun Chen, Jill Pecon-Slattery, Stephen J. O'Brien
Biology Faculty Articles

Genome Map: Comparative Genomics- Mammalian Radiations, Stephen J. O'Brien, John F. Eisenberg, Michael Miyamoto, S. Blair Hedges, Sudhir Kumar, Don E. Wilson, Marilyn Menotti-Raymond, William J. Murphy, William G. Nash, Leslie A. Lyons, Joan C. Menninger, Roscoe Stanyon, Johannes Wienberg, N. Copeland, Nancy A. Jenkins, Joel Gellin, Martine Yerle, Leif Andersson, James E. Womack, T. Broad, J. Postlethwait, Oleg Serov, Ernie Bailey, Michael R. James, Takeshi Watanabe, Matthew J. Wakefield, Jennifer Marshall Graves
Biology Faculty Articles

The Promise of Comparative Genomics in Mammals, Stephen J. O'Brien, Marilyn Menotti-Raymond, William J. Murphy, William Nash, Johannes Wienberg, Roscoe Stanyon, Neal G. Copeland, Nancy A. Jenkins, James E. Womack, Jennifer A. Marshall Graves
Biology Faculty Articles

Development of a Feline Whole Genome Radiation Hybrid Panel and Comparative Mapping of Human Chromosome 12 and 22 Loci, William J. Murphy, Marilyn Menotti-Raymond, Leslie A. Lyons, Mary A. Thompson, Stephen J. O'Brien
Biology Faculty Articles