The Earth BioGenome Project 2020: Starting the clock, Harris A. Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L. Allende, John M. Archibald, Katharine B. Baker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark L. Blaxter, Jing Cai, Nicolette D. Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu-Miaw Chaw, Lei Chen, Anna K. Childers, Jonathan A. Coddington, Dalia A. Conde, Montserrat Corominas, Keith A. Crandall, Andrew J. Crawford, Federica DiPalma, Richard Durbin, ThankGod E. Ebenezer, Scott V. Edwards, Olivier Fedrigo, Paul Flicek, Giulio Formenti, Richard A. Gibbs, M. Thomas P. Gilbert, Melissa M. Goldstein, Jennifer Marshall Graves, Henry T. Greely, Igor V. Grigoriev, Kevin J. Hackett, Neil Hall, David Haussler, Kristofer M. Helgen, Carolyn J. Hogg, Sachiko Isobe, Kjetill Sigurd Jakobson, Axel Janke, Erich D. Jarvis, Warren E. Johnson, Steven J. M. Jones, Elinor K. Karlsson, Paul J. Kersey, Jin-Hyoung Kim, W. John Kress, Shigehiro Kuraku, Mara K. N. Lawniczak, James H. Leebens-Mack, Xueyan Li, Kerstin Lindblad-Toh, Xin Liu, Jose V. Lopez, Tomas Marques-Bonet, Sophie Mazard, Jonna A. K. Mazet, Camila J. Mazzoni, Eugene W. Myers, Rachel J. O'Neill, Sadye Paez, Hyun Park, Gene E. Robinson, Cristina Roquet, Oliver A. Ryder, Jamal S. M. Sabir, H. Bradley Shaffer, Timothy M. Shank, Jacob S. Sherkow, Pamela S. Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano-Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L. Wilson, Xun Xu, Huanming Yang, Anne D. Yoder, Guojie Zhang
Jose Lopez

Standards recommendations for the Earth BioGenome Project, Mara K. Lawniczak, Richard Durbin, Paul Flicek, Kerstin Lindblad-Toh, Xiaofeng Wei, John M. Archibald, William J. Baker, Katherine Belov, Mark L. Blaxter, Tomas Marques-Bonet, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Andrew J. Crawford, Robert P. Davey, Federica Di Palma, Qi Fang, Wilfried Haerty, Neil Hall, Katherine J. Hoff, Kerstin Howe, Erich D. Jarvis, Warren E. Johnson, Rebecca N. Johnson, Paul J. Kersey, Xin Liu, Jose V. Lopez, Eugene W. Myers, Olga Vinnere Pettersson, Adam M. Phillippy, Monica F. Poelchau, Kim D. Pruitt, Arang Rhie, Juan Carlos Castilla-Rubio, Sunil Kumar Sahu, Nicholas A. Salmon, Pamela S. Soltis, David Swarbreck, Françoise Thibaud-Nissen, Sibo Wang, Jill L. Wegrzyn, Guojie Zhang, He Zhang, Harris A. Lewin, Stephen Richards
Jose Lopez

Standards recommendations for the Earth BioGenome Project, Mara K. Lawniczak, Richard Durbin, Paul Flicek, Kerstin Lindblad-Toh, Xiaofeng Wei, John M. Archibald, William J. Baker, Katherine Belov, Mark L. Blaxter, Tomas Marques-Bonet, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Andrew J. Crawford, Robert P. Davey, Federica Di Palma, Qi Fang, Wilfried Haerty, Neil Hall, Katherine J. Hoff, Kerstin Howe, Erich D. Jarvis, Warren E. Johnson, Rebecca N. Johnson, Paul J. Kersey, Xin Liu, Jose V. Lopez, Eugene W. Myers, Olga Vinnere Pettersson, Adam M. Phillippy, Monica F. Poelchau, Kim D. Pruitt, Arang Rhie, Juan Carlos Castilla-Rubio, Sunil Kumar Sahu, Nicholas A. Salmon, Pamela S. Soltis, David Swarbreck, Françoise Thibaud-Nissen, Sibo Wang, Jill L. Wegrzyn, Guojie Zhang, He Zhang, Harris A. Lewin, Stephen Richards
Biology Faculty Articles

The Earth BioGenome Project 2020: Starting the clock, Harris A. Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L. Allende, John M. Archibald, Katharine B. Baker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark L. Blaxter, Jing Cai, Nicolette D. Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu-Miaw Chaw, Lei Chen, Anna K. Childers, Jonathan A. Coddington, Dalia A. Conde, Montserrat Corominas, Keith A. Crandall, Andrew J. Crawford, Federica DiPalma, Richard Durbin, ThankGod E. Ebenezer, Scott V. Edwards, Olivier Fedrigo, Paul Flicek, Giulio Formenti, Richard A. Gibbs, M. Thomas P. Gilbert, Melissa M. Goldstein, Jennifer Marshall Graves, Henry T. Greely, Igor V. Grigoriev, Kevin J. Hackett, Neil Hall, David Haussler, Kristofer M. Helgen, Carolyn J. Hogg, Sachiko Isobe, Kjetill Sigurd Jakobson, Axel Janke, Erich D. Jarvis, Warren E. Johnson, Steven J. M. Jones, Elinor K. Karlsson, Paul J. Kersey, Jin-Hyoung Kim, W. John Kress, Shigehiro Kuraku, Mara K. N. Lawniczak, James H. Leebens-Mack, Xueyan Li, Kerstin Lindblad-Toh, Xin Liu, Jose V. Lopez, Tomas Marques-Bonet, Sophie Mazard, Jonna A. K. Mazet, Camila J. Mazzoni, Eugene W. Myers, Rachel J. O'Neill, Sadye Paez, Hyun Park, Gene E. Robinson, Cristina Roquet, Oliver A. Ryder, Jamal S. M. Sabir, H. Bradley Shaffer, Timothy M. Shank, Jacob S. Sherkow, Pamela S. Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano-Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L. Wilson, Xun Xu, Huanming Yang, Anne D. Yoder, Guojie Zhang
Biology Faculty Articles

Author Correction: Puma genomes from North and South America provide insights into the genomic consequences of inbreeding (Nature Communications, (2019), 10, 1, (4769), 10.1038/s41467-019-12741-1), Nedda F. Saremi, Megan A. Supple, Ashley Byrne, James A. Cahill, Luiz Lehmann Coutinho, Love Dalén, Henrique V. Figueiró, Warren E. Johnson, Heather J. Milne, Stephen J. O’Brien, Brendan O’Connell, David P. Onorato, Seth P.D. Riley, Jeff A. Sikich, Daniel R. Stahler, Priscilla Marqui Schmidt Villela, Christopher Vollmers, Robert K. Wayne, Eduardo Eizirik, Russell B. Corbett-Detig, Richard E. Green, Christopher C. Wilmers, Beth Shapiro
Stephen O'Brien

Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments, Rui Borges, Warren E. Johnson, Stephen J. O'Brien, Cidália Gomes, Christopher P. Heesy, Agostinho Antunes
Stephen O'Brien

Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks, Marta Farré, Jaebum Kim, Anastasia A. Proskuryakova, Yang Zhang, Anastasia I. Kulemzina, Qiye Li, Yang Zhou, Yingqi Xiong, Jennifer L. Johnson, Polina L. Perelman, Warren E. Johnson, Wesley C. Warren, Anna V. Kukekova, Guojie Zhang, Stephen J. O’Brien, Oliver A. Ryder, Alexander S. Graphodatsky, Jian Ma, Harris A. Lewin, Denis M. Larkin
Stephen O'Brien

Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species, David Haussler, Stephen J. O'Brien, Oliver A. Ryder, F. Keith Barker, Michele Clamp, Andrew J. Crawford, Robert Hanner, Olivier Hanotte, Warren E. Johnson, Jimmy A. McGuire, Webb Miller, Robert W. Murphy, William J. Murphy, Frederick H. Sheldon, Barry Sinervo, Byrappa Venkatesh, Edward O. Wiley, Fred W. Allendorf, George Amato, C. Scott Baker, Aaron Bauer, Albano Beja-Pereira, Eldredge Bermingham, Giacomo Bernardi, Cibele R. Bonvicino, Sydney Brenner, Terry Burke, Joel Cracraft, Mark Diekhans
Stephen O'Brien

Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens, Ross Barnett, Michael V. Westbury, Marcela Sandoval-Velasco, Filipe Garrett Vieira, Sungwon Jeon, Grant Zazula, Michael D. Martin, Simon Y.W. Ho, Niklas Mather, Shyam Gopalakrishnan, Jazmín Ramos-Madrigal, Marc de Manuel, M. Lisandra Zepeda-Mendoza, Agostinho Antunes, Aldo Carmona Baez, Binia De Cahsan, Greger Larson, Stephen J. O'Brien, Eduardo Eizirik, Warren E. Johnson, Klaus Peter Koepfli, Andreas Wilting, Jörns Fickel, Love Dalén, Eline D. Lorenzen, Tomas Marques-Bonet, Anders J. Hansen, Guojie Zhang, Jong Bhak
Stephen O'Brien

PGD: a pangolin genome hub for the research community, Tze King Tan, Ka Yun Tan, Ranjeev Hari, Aini Mohamed Yusoff, Guat Jah Wong, Cheuk Chuen Siow, Naresh V.R. Mutha, Mike Rayko, Aleksey Komissarov, Pavel Dobrynin, Ksenia Krasheninnikova, Gaik Tamazian, Ian C. Paterson, Wesley C. Warren, Warren E. Johnson, Stephen J. O'Brien, Siew Woh Choo
Stephen O'Brien

Puma genomes from North and South America provide insights into the genomic consequences of inbreeding, Nedda F. Saremi, Megan A. Supple, Ashley Byrne, James A. Cahill, Luiz Lehmann Coutinho, Love Dalén, Henrique V. Figueiró, Warren E. Johnson, Heather J. Milne, Stephen J. O’Brien, Brendan O’Connell, David P. Onorato, Seth P.D. Riley, Jeff A. Sikich, Daniel R. Stahler, Priscilla Marqui Schmidt Villela, Christopher Vollmers, Robert K. Wayne, Eduardo Eizirik, Russell B. Corbett-Detig, Richard E. Green, Christopher C. Wilmers, Beth Shapiro
Stephen O'Brien

Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A resource for monitoring diversity in ex situ and in situ populations, Klaus Peter Koepfli, Gaik Tamazian, David Wildt, Pavel Dobrynin, Changhoon Kim, Paul B. Frandsen, Raquel Godinho, Andrey A. Yurchenko, Aleksey Komissarov, Ksenia Krasheninnikova, Sergei Kliver, Sofia Kolchanova, Margarida Gonçalves, Miguel Carneiro, Pedro Vaz Pinto, Nuno Ferrand, Jesús E. Maldonado, Gina M. Ferrie, Leona Chemnick, Oliver A. Ryder, Warren E. Johnson, Pierre Comizzoli, Stephen J. O'Brien, Budhan S. Pukazhenthi
Stephen O'Brien

The Complete Phylogeny of Pangolins: Scaling Up Resources for the Molecular Tracing of the Most Trafficked Mammals on Earth, Philippe Gaubert, Agostinho Antunes, Hao Meng, Lin Miao, Stéphane Peigné, Fabienne Justy, Flobert Njiokou, Sylvain Dufour, Emmanuel Danquah, Jayanthi Alahakoon, Erik Verheyen, William T. Stanley, Stephen J. O'Brien, Warren E. Johnson, Shu Jin Luo
Stephen O'Brien

The evolutionary history of extinct and living lions, Marc de Manuel, Ross Barnett, Marcela Sandoval-Velasco, Nobuyuki Yamaguchi, Filipe Garrett Vieira, M. Lisandra Zepeda Mendoza, Shiping Liu, Michael D. Martin, Mikkel Holger S. Sinding, Sarah S.T. Mak, Christian Carøe, Shanlin Liu, Chunxue Guo, Jiao Zheng, Grant Zazula, Gennady Baryshnikov, Eduardo Eizirik, Klaus Peter Koepfli, Warren E. Johnson, Agostinho Antunes, Thomas Sicheritz-Ponten, Shyam Gopalakrishnan, Greger Larson, Huanming Yang, Stephen J. O'Brien, Anders J. Hansen, Guojie Zhang, Tomas Marques-Bonet, M. Thomas P. Gilbert
Stephen O'Brien

Tissue sampling methods and standards for vertebrate genomics, Pamela B.Y. Wong, Edward O. Wiley, Warren E. Johnson, Oliver A. Ryder, Stephen J. O'Brien, David Haussler, Klaus Peter Koepfli, Marlys L. Houck, Polina Perelman, Gabriela Mastromonaco, Andrew C. Bentley, Byrappa Venkatesh, Ya Ping Zhang, Robert W. Murphy
Stephen O'Brien

Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens, Ross Barnett, Michael V. Westbury, Marcela Sandoval-Velasco, Filipe Garrett Vieira, Sungwon Jeon, Grant Zazula, Michael D. Martin, Simon Y.W. Ho, Niklas Mather, Shyam Gopalakrishnan, Jazmín Ramos-Madrigal, Marc de Manuel, M. Lisandra Zepeda-Mendoza, Agostinho Antunes, Aldo Carmona Baez, Binia De Cahsan, Greger Larson, Stephen J. O'Brien, Eduardo Eizirik, Warren E. Johnson, Klaus Peter Koepfli, Andreas Wilting, Jörns Fickel, Love Dalén, Eline D. Lorenzen, Tomas Marques-Bonet, Anders J. Hansen, Guojie Zhang, Jong Bhak
Biology Faculty Articles

The evolutionary history of extinct and living lions, Marc de Manuel, Ross Barnett, Marcela Sandoval-Velasco, Nobuyuki Yamaguchi, Filipe Garrett Vieira, M. Lisandra Zepeda Mendoza, Shiping Liu, Michael D. Martin, Mikkel Holger S. Sinding, Sarah S.T. Mak, Christian Carøe, Shanlin Liu, Chunxue Guo, Jiao Zheng, Grant Zazula, Gennady Baryshnikov, Eduardo Eizirik, Klaus Peter Koepfli, Warren E. Johnson, Agostinho Antunes, Thomas Sicheritz-Ponten, Shyam Gopalakrishnan, Greger Larson, Huanming Yang, Stephen J. O'Brien, Anders J. Hansen, Guojie Zhang, Tomas Marques-Bonet, M. Thomas P. Gilbert
Biology Faculty Articles

Puma genomes from North and South America provide insights into the genomic consequences of inbreeding, Nedda F. Saremi, Megan A. Supple, Ashley Byrne, James A. Cahill, Luiz Lehmann Coutinho, Love Dalén, Henrique V. Figueiró, Warren E. Johnson, Heather J. Milne, Stephen J. O’Brien, Brendan O’Connell, David P. Onorato, Seth P.D. Riley, Jeff A. Sikich, Daniel R. Stahler, Priscilla Marqui Schmidt Villela, Christopher Vollmers, Robert K. Wayne, Eduardo Eizirik, Russell B. Corbett-Detig, Richard E. Green, Christopher C. Wilmers, Beth Shapiro
Biology Faculty Articles

Author Correction: Puma genomes from North and South America provide insights into the genomic consequences of inbreeding (Nature Communications, (2019), 10, 1, (4769), 10.1038/s41467-019-12741-1), Nedda F. Saremi, Megan A. Supple, Ashley Byrne, James A. Cahill, Luiz Lehmann Coutinho, Love Dalén, Henrique V. Figueiró, Warren E. Johnson, Heather J. Milne, Stephen J. O’Brien, Brendan O’Connell, David P. Onorato, Seth P.D. Riley, Jeff A. Sikich, Daniel R. Stahler, Priscilla Marqui Schmidt Villela, Christopher Vollmers, Robert K. Wayne, Eduardo Eizirik, Russell B. Corbett-Detig, Richard E. Green, Christopher C. Wilmers, Beth Shapiro
Biology Faculty Articles

Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights froma Highly Derived Visual Phenotype, Rui Borges, Joao Fonseca, Cidalia Gomes, Warren E. Johnson, Stephen James O'Brien, Guojie Zhang, M. Thomas P. Gilbert, Erich D. Jarvis, Agostinho Antunes
Stephen O'Brien

The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host–Pathogen Arms Race in Birds, Imran Khan, Emanuel Maldonado, Liliana Silva, Daniela Almeida, Warren E. Johnson, Stephen James O'Brien, Guojie Zhang, Erich D. Jarvis, M. Thomas Gilbert, Agostinho Antunes
Stephen O'Brien

The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host–Pathogen Arms Race in Birds, Imran Khan, Emanuel Maldonado, Liliana Silva, Daniela Almeida, Warren E. Johnson, Stephen James O'Brien, Guojie Zhang, Erich D. Jarvis, M. Thomas Gilbert, Agostinho Antunes
Biology Faculty Articles

Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights froma Highly Derived Visual Phenotype, Rui Borges, Joao Fonseca, Cidalia Gomes, Warren E. Johnson, Stephen James O'Brien, Guojie Zhang, M. Thomas P. Gilbert, Erich D. Jarvis, Agostinho Antunes
Biology Faculty Articles

Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks, Marta Farré, Jaebum Kim, Anastasia A. Proskuryakova, Yang Zhang, Anastasia I. Kulemzina, Qiye Li, Yang Zhou, Yingqi Xiong, Jennifer L. Johnson, Polina L. Perelman, Warren E. Johnson, Wesley C. Warren, Anna V. Kukekova, Guojie Zhang, Stephen J. O’Brien, Oliver A. Ryder, Alexander S. Graphodatsky, Jian Ma, Harris A. Lewin, Denis M. Larkin
Biology Faculty Articles

Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A resource for monitoring diversity in ex situ and in situ populations, Klaus Peter Koepfli, Gaik Tamazian, David Wildt, Pavel Dobrynin, Changhoon Kim, Paul B. Frandsen, Raquel Godinho, Andrey A. Yurchenko, Aleksey Komissarov, Ksenia Krasheninnikova, Sergei Kliver, Sofia Kolchanova, Margarida Gonçalves, Miguel Carneiro, Pedro Vaz Pinto, Nuno Ferrand, Jesús E. Maldonado, Gina M. Ferrie, Leona Chemnick, Oliver A. Ryder, Warren E. Johnson, Pierre Comizzoli, Stephen J. O'Brien, Budhan S. Pukazhenthi
Biology Faculty Articles

The Complete Phylogeny of Pangolins: Scaling Up Resources for the Molecular Tracing of the Most Trafficked Mammals on Earth, Philippe Gaubert, Agostinho Antunes, Hao Meng, Lin Miao, Stéphane Peigné, Fabienne Justy, Flobert Njiokou, Sylvain Dufour, Emmanuel Danquah, Jayanthi Alahakoon, Erik Verheyen, William T. Stanley, Stephen J. O'Brien, Warren E. Johnson, Shu Jin Luo
Biology Faculty Articles

Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments, Rui Borges, Warren E. Johnson, Stephen J. O'Brien, Cidália Gomes, Christopher P. Heesy, Agostinho Antunes
Biology Faculty Articles

Rates of Nuclear and Cytoplasmic Mitochondrial DNA Sequence Divergence in Mammals, Jose V. Lopez, Melanie Culver, J. Claiborne Stephens, Warren E. Johnson, Stephen James O'Brien
Jose Lopez

Continued Decline in Genetic Diversity Among Wild Cheetahs (Acinonyx jubatus) Without Further Loss of Semen Quality, Kimberly A. Terrell, Adrienne E. Crosier, David E. Wildt, Stephen J. O'Brien, Nicola M. Anthony, Laurie Marker, Warren E. Johnson
Stephen O'Brien

Conservation Genetics of the Cheetah: Lessons Learned and New Opportunities, Stephen J. O'Brien, Warren E. Johnson, Carlos A. Driscoll, Pavel Dobrynin, Laurie Marker
Stephen O'Brien

Rates of Nuclear and Cytoplasmic Mitochondrial DNA Sequence Divergence in Mammals, Jose V. Lopez, Melanie Culver, J. Claiborne Stephens, Warren E. Johnson, Stephen James O'Brien
Stephen O'Brien

Positive Selection Linked with Generation of Novel Mammalian Dentition Patterns, Joao P. Machado, Siby Philip, Emanuel Maldonado, Stephen J. O'Brien, Warren E. Johnson
Stephen O'Brien

Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds, Daniela Almeida, Emanuel Maldonado, Imran Khan, Liliana Silva, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes
Stephen O'Brien

Conservation Genetics of the Cheetah: Lessons Learned and New Opportunities, Stephen J. O'Brien, Warren E. Johnson, Carlos A. Driscoll, Pavel Dobrynin, Laurie Marker
Biology Faculty Articles

Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds, Daniela Almeida, Emanuel Maldonado, Imran Khan, Liliana Silva, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes
Biology Faculty Articles

Pangolin genomes and the evolution of mammalian scales and immunity, Siew Who Choo, Mike Rayko, Tze King Tan, Ranjeev Hari, Aleksey Komissarov, Wei Yee Wee, Andrey A. Yurchenko, Sergey Kliver, Gaik Tamazian, Agostinho Antunes, Richard K. Wilson, Wesley C. Warren, Klaus Peter Koepfli, Patrick Minx, Ksenia Krasheninnikova, Antoinette Kotze, Desire L. Dalton, Elaine Vermaak, Ian C. Paterson, Pavel Dobrynin, Frankie Thomas Sitam, Jeffrine J. Rovie-Ryan, Warren E. Johnson, Aini Mohamed Yusoff, Shu Jin Luo, Kayal Vizi Karuppannan, Gang Fang, Deyou Zheng, Mark B. Gerstein
Biology Faculty Articles

A Molecular Phylogeny of Living Primates, Polina L. Perelman, Warren E. Johnson, Christian Roos, Hector Seuanez, Julie E. Horvath, Miguel A. M. Moreira, Bailey Kessing, J. U. Pontius, Melody E. Roelke, Yves Rumpler, Maria P. C. Schneider, Artur Silva, Stephen J. O'Brien, Jill Pecon-Slattery
Stephen O'Brien

Adaptive Evolution of the Matrix Extracellular Phosphoglycoprotein in Mammals, Joao P. Machado, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Stephen O'Brien

Bone-Associated Gene Evolution and the Origin of Flight in Birds, Joao P. Machado, Warren E. Johnson, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O'Brien, Agostinho Antunes
Stephen O'Brien

Emerging Viruses in the Felidae: Shifting Paradigms, Stephen J. O'Brien, Jennifer L. Troyer, Meredith Brown, Warren E. Johnson, Agostinho Antunes, Melody E. Roelke, Jill Pecon-Slattery
Stephen O'Brien

Evolutionary Genomics and Adaptive Evolution of the Hedgehog Gene Family (Shh, Ihh and Dhh) in Vertebrates, Joana Pereira, Warren E. Johnson, Stephen J. O'Brien, Erich D. Jarvis, Guojie Zhang, M. Thomas P. Gilbert, Vitor Vasconcelos, Agostinho Antunes
Stephen O'Brien

Gene Loss, Adaptive Evolution and the Co-Evolution of Plumage Coloration Genes with Opsins in Birds, Rui Borges, Imran Khan, Warren E. Johnson, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O'Brien, Agostinho Antunes
Stephen O'Brien

Genetic Characterization of Feline Leukemia Virus from Florida Panthers, Meredith Brown, Mark W. Cunningham, Alfred L. Roca, Jennifer L. Troyer, Warren E. Johnson, Stephen J. O'Brien
Stephen O'Brien

Genetic and Phylogenetic Divergence of Feline Immunodeficiency Virus in the Puma (Puma concolor), Margaret A. Carpenter, Eric W. Brown, Melanie Culver, Warren E. Johnson, Jill Pecon-Slattery, Dulce Brousset, Stephen J. O'Brien
Stephen O'Brien

Genomic Legacy of the African Cheetah, Acinonyx jubatus, Pavel Dobrynin, Shiping Liu, Gaik Tamazian, Zijun Xiong, Andrey A. Yurchenko, Ksenia Krasheninnikova, Sergey Kliver, A. Schmidt-Kunzel, Klaus-Peter Koepfli, Warren E. Johnson, Lukas F. K. Kuderna, Raquel Garcia-Perez, Marc de Manuel, Ricardo Godinez, Aleksey Komissarov, Alexey Makunin, Vladimir Brukhin, Weilin Qiu, Long Zhou, Fang Li, Jian Yi, Carlos A. Driscoll, Agostinho Antunes, T. K. Oleksyk, Eduardo Eizirik, Polina Perelman, Melody E. Roelke, David E. Wildt, Mark Diekhans, Tomas Marques-Bonet, Laurie Marker, Jong Bhak, Jun Wang, Guojie Zhang, Stephen J. O'Brien
Stephen O'Brien

How the Leopard Hides its Spots: ASIP Mutations and Melanism in Wild Cats, Alexsandra Schneider, Victor A. David, Warren E. Johnson, Stephen J. O'Brien, Gregory S. Barsh, Marilyn Menotti-Raymond, Eduardo Eizirik
Stephen O'Brien

Initial Sequence and Comparative Analysis of the Cat Genome, J. U. Pontius, James C. Mullikin, Douglas R. Smith, Kerstin Lindblad-Toh, Sante Gnerre, Michele Clamp, Jean Chang, R. Stephens, Beena A. Neelam, Natalia Volfovsky, Alejandro A. Schaffer, R. Agarwala, Kristina Narfstrom, William J. Murphy, Urs Giger, Alfred L. Roca, Agostinho Antunes, Marilyn Menotti-Raymond, Naoya Yuhki, Jill Pecon-Slattery, Warren E. Johnson, Guillaume Bourque, Glenn Tesler, Stephen J. O'Brien
Stephen O'Brien

Molecular Evolution and the Role of Oxidative Stress in the Expansion and Functional Diversification of Cytosolic Glutathione Transferases, Rute R. da Fonseca, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Stephen O'Brien

Phylogeography and Genetic Ancestry of Tigers (Panthera tigris), Shu-Jin Luo, Jae-Heup Kim, Warren E. Johnson, Joelle van der Walt, Janice S. Martenson, Naoya Yuhki, Dale Miquelle, Olga Uphyrkina, John M. Goodrich, Howard Quigley, R. Tilson, Gerald Brady, Paolo Martelli, Vellayan Subramaniam, Charles McDougal, Sun Hean, Shi-Qiang Huang, Wenshi Pan, Ullas K. Karanth, Melvin Sunquist, James L. D. Smith, Stephen J. O'Brien
Stephen O'Brien

Seroprevalence and Genomic Divergence of Circulating Strains of Feline Immunodeficiency Virus Among Felidae and Hyaenidae Species, Jennifer L. Troyer, Jill Pecon-Slattery, Melody E. Roelke, Warren E. Johnson, Sue VandeWoude, Nuria Vazquez-Salat, Meredith Brown, Laurence Frank, Rosie Woodroffe, Christiaan Winterbach, Hanlie Winterbach, Graham Hemson, Mitchell Bush, Kathleen A. Alexander, Eloy Revilla, Stephen J. O'Brien
Stephen O'Brien

Subspecific Status of the Korean Tiger Inferred by Ancient DNA Analysis, Mu-Yeong Lee, Jee Yun Hyun, Seo-Jin Lee, Junghwa An, Eunok Lee, Mi-Sook Min, Junpei Kimura, Shin-ichirio Kawada, Nozomi Kurihara, Shu-Jin Luo, Stephen J. O'Brien, Warren E. Johnson, Hang Lee
Stephen O'Brien

The Adaptive Evolution of the Mammalian Mitochondrial Genome, Rute R. da Fonseca, Warren E. Johnson, Stephen J. O'Brien, Maria J. Ramos, Agostinho Antunes
Stephen O'Brien

The Dynamic Proliferation of CanSINEs Mirrors the Complex Evolution of Feliforms, Kathryn B. Walters-Conte, Diana L. E. Johnson, Warren E. Johnson, Stephen J. O'Brien, Jill Pecon-Slattery
Stephen O'Brien

The Evolutionary Dynamics of the Lion Panthera leo Revealed by Host and Viral Population Genomics, Agostinho Antunes, Jennifer L. Troyer, Melody E. Roelke, Jill Pecon-Slattery, Craig Packer, Christiaan Winterbach, Graham Hemson, Laurence G. Frank, Philip Stander, Ludwig Siefert, Margaret Driciru, Paul J. Funston, Kathy A. Alexander, Katherine C. Prager, Gus Mills, David E. Wildt, Mitch E. Bush, Stephen J. O'Brien, Warren E. Johnson
Stephen O'Brien

Mammalian Keratin Associated Proteins (KRTAPs) Subgenomes: Disentangling Hair Diversity and Adaptation to Terrestrial and Aquatic Environments, Imran Khan, Emanuel Maldonado, Vitor Vasconcelos, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes
Stephen O'Brien

The Tiger Genome and Comparative Analysis with Lion and Snow Leopard Genomes, Yun Sung Cho, Li Hu, Haolong Hou, Hang Lee, Jiaohui Xu, Soowhan Kwon, Sukhun Oh, Hak-Min Kim, Sungwoong Jho, Sangsoo Kim, Young-Ah Shin, Byung Chul Kim, Hyunmin Kim, Chang-uk Kim, Shu-Jin Luo, Warren E. Johnson, Klaus-Peter Koepfli, A. Schmidt-Kunzel, Jason A. Turner, L. Marker, Cindy K. Harper, Susan M. Miller, Wilhelm Jacobs, Laura D. Bertola, Tae Hyung Kim, Sunghoon Lee, Qian Zhou, Hyun-Ju Jung, Xiao Xu, Priyvrat Gadhvi, Pengwei Xu, Yingqi Xiong, Yadan Luo, Shengkai Pan, Caiyun Gou, Xiuhui Chu, Jilin Zhang, Sanyang Liu, Jing He, Ying Chen, Linfeng Yang, Yulan Yang, Jiaju He, Sha Liu, Junyi Wang, Chul Hong Kim, Hwanjong Kwak, Jong-Soo Kim, Seungwoo Hwang, Junsu Ko, Chang-Bae Kim, Sangtae Kim, Damdin Bayarlkhagva, Woon Kee Paek, Seong-Jin Kim, Stephen J. O'Brien, Jun Wang, Jong Bhak
Stephen O'Brien

The Role of Gene Duplication and Unconstrained Selective Pressures in the Melanopsin Gene Family Evolution and Vertebrate Circadian Rhythm Regulation, Rui Borges, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Stephen O'Brien

Tissue Sampling Methods and Standards for Vertebrate Genomics, Pamela B. Y. Wong, Edward O. Wiley, Warren E. Johnson, Oliver A. Ryder, Stephen J. O'Brien, David Haussler, Klaus-Peter Koepfli, Marlys L. Houck, Polina L. Perelman, Gabriela Mastromonaco, Andrew C. Bentley, Byrappa Venkatesh, Ya-ping Zhang, Robert W. Murphy
Stephen O'Brien

The Evolutionary Dynamics of the Lion Panthera leo Revealed by Host and Viral Population Genomics, Agostinho Antunes, Jennifer L. Troyer, Melody E. Roelke, Jill Pecon-Slattery, Craig Packer, Christiaan Winterbach, Graham Hemson, Laurence G. Frank, Philip Stander, Ludwig Siefert, Margaret Driciru, Paul J. Funston, Kathy A. Alexander, Katherine C. Prager, Gus Mills, David E. Wildt, Mitch E. Bush, Stephen J. O'Brien, Warren E. Johnson
Stephen O'Brien

Positive Selection Linked with Generation of Novel Mammalian Dentition Patterns, Joao P. Machado, Siby Philip, Emanuel Maldonado, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Continued Decline in Genetic Diversity Among Wild Cheetahs (Acinonyx jubatus) Without Further Loss of Semen Quality, Kimberly A. Terrell, Adrienne E. Crosier, David E. Wildt, Stephen J. O'Brien, Nicola M. Anthony, Laurie Marker, Warren E. Johnson
Biology Faculty Articles

Bone-Associated Gene Evolution and the Origin of Flight in Birds, Joao P. Machado, Warren E. Johnson, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O'Brien, Agostinho Antunes
Biology Faculty Articles

PGD: a pangolin genome hub for the research community, Tze King Tan, Ka Yun Tan, Ranjeev Hari, Aini Mohamed Yusoff, Guat Jah Wong, Cheuk Chuen Siow, Naresh V.R. Mutha, Mike Rayko, Aleksey Komissarov, Pavel Dobrynin, Ksenia Krasheninnikova, Gaik Tamazian, Ian C. Paterson, Wesley C. Warren, Warren E. Johnson, Stephen J. O'Brien, Siew Woh Choo
Biology Faculty Articles

Genomic Legacy of the African Cheetah, Acinonyx jubatus, Pavel Dobrynin, Shiping Liu, Gaik Tamazian, Zijun Xiong, Andrey A. Yurchenko, Ksenia Krasheninnikova, Sergey Kliver, A. Schmidt-Kunzel, Klaus-Peter Koepfli, Warren E. Johnson, Lukas F. K. Kuderna, Raquel Garcia-Perez, Marc de Manuel, Ricardo Godinez, Aleksey Komissarov, Alexey Makunin, Vladimir Brukhin, Weilin Qiu, Long Zhou, Fang Li, Jian Yi, Carlos A. Driscoll, Agostinho Antunes, T. K. Oleksyk, Eduardo Eizirik, Polina Perelman, Melody E. Roelke, David E. Wildt, Mark Diekhans, Tomas Marques-Bonet, Laurie Marker, Jong Bhak, Jun Wang, Guojie Zhang, Stephen J. O'Brien
Biology Faculty Articles

Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida, Imran Khan, Zhikai Yang, Emanuel Maldonado, Cai Li, Guojie Zhang, M. Thomas P. Gilbert, Erich D. Jarvis, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes
Biology Faculty Articles

Gene Loss, Adaptive Evolution and the Co-Evolution of Plumage Coloration Genes with Opsins in Birds, Rui Borges, Imran Khan, Warren E. Johnson, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O'Brien, Agostinho Antunes
Biology Faculty Articles

Genome-Wide Evidence Reveals that African and Eurasian Golden Jackals are Distinct Species, Klaus-Peter Koepfli, John Pollinger, Raquel Godinho, Jacqueline Robinson, Amanda Lea, Sarah Hendricks, Rena M. Schweizer, Olaf Thalmann, Pedro Salva, Zhenxin Fan, Andrey A. Yurchenko, Pavel Dobrynin, Alexey Makunin, James A. Cahill, Beth Shapiro, Francisco Alvares, Jose C. Brito, Eli Geffen, Jennifer A. Leonard, Kristofer M. Helgen, Warren E. Johnson, Stephen J. O'Brien, Blaire Van Valkenburgh, Robert K. Wayne
Biology Faculty Articles

Whole-Genome Analyses Resolve Early Branches in the Tree of Life of Modern Birds, Erich D. Jarvis, Siavash Mirarab, Andre J. Aberer, Bo Li, Peter Houde, Cai Li, Simon Y. W. Ho, Brant C. Faircloth, Benoit Nabholz, Jason T. Howard, Alexander Suh, Claudia C. Weber, Rute R. da Fonseca, Jianwen Li, Fang Zhang, Hui Li, Long Zhou, Nitish Narula, Liang Lu, Ganesh Ganapathy, Bastien Boussau, Md. Shamsuzzoha Bayzid, Volodymyr Zavidovych, Sankar Subramanian, Toni Gabaldon, Salvador Capella-Gutierrez, Jaime Huerta-Cepas, Bhanu Rekepalli, Kasper Munch, Mikkel Schierup, Bent Lindow, Wesley C. Warren, David Ray, Richard E. Green, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Shengbin Li, Ning Li, Yinhua Huang, Elizabeth Derryberry, Mads F. Bertelsen, Frederick H. Sheldon, Robb T. Brumfield, Claudio V. Mello, Peter V. Lovell, Morgan Wirthlin, Maria Paula Cruz Schneider, Francisco Prosdocimi, Jose Alfredo Samaniego, Ahmed Missael Vargas Velazquez, Alonzo Alfaro-Nunez, Paula F. Campos, Bent Petersen, Thomas Sicheritz-Ponten, An Pas, Tom Bailey, Paul Scofield, Michael Bunce, David M. Lambert, Qi Zhou, Polina L. Perelman, Amy C. Driskell, Beth Shapiro, Zijun Xiong, Yongli Zeng, Shiping Liu, Zhenyu Li, Binghang Liu, Kui Wu, Jin Xiao, Xiong Yinqi, Qiumei Zheng, Yong Zhang, Huanming Yang, Jian Wang, Linnea Smeds, Frank E. Rheindt, Michael Braun, Jon Fjeldsa, Ludovic Orlando, F. Keith Barker, Knud Andreas Jonsson, Warren E. Johnson, Klaus-Peter Koepfli, Stephen J. O'Brien, David Haussler, Oliver A. Ryder, Carsten Rahbek, Eske Willerslev, Gary R. Graves, Travis C. Glenn, John McCormack, Dave Burt, Hans Ellegren, Per Alstrom, Scott V. Edwards, Alexandros Stamatakis, David P. Mindell, Joel Cracraft, Edward L. Braun, Tandy Warnow, Wang Jun, M. Thomas P. Gilbert, Guojie Zhang
Biology Faculty Articles

Comparative Genomics Reveals Insights into Avian Genome Evolution and Adaptation, Guojie Zhang, Cai Li, Qiye Li, Bo Li, Denis M. Larkin, Chul Lee, Jay F. Storz, Agostinho Antunes, Matthew J. Greenwold, Robert W. Meredith, Anders Odeen, Jie Cui, Qi Zhou, Luohao Xu, Hailin Pan, Zongji Wang, Lijun Jin, Pei Zhang, Haofu Hu, Wei Yang, Jiang Hu, Jin Xiao, Zhikai Yang, Yang Liu, Qiaolin Xie, Hao Yu, Jinmin Lian, Ping Wen, Fang Zhang, Hui Li, Yongli Zeng, Zijun Xiong, Shiping Liu, Long Zhou, Zhiyong Huang, Na An, Jie Wang, Qiumei Zheng, Yingqi Xiong, Guangbiao Wang, Bo Wang, Jingjing Wang, Yu Fan, Rute R. da Fonseca, Alonzo Alfaro-Nunez, Mikkel Schubert, Ludovic Orlando, Tobias Mourier, Jason T. Howard, Ganeshkumar Ganapathy, Andreas Pfenning, Osceola Whitney, Miram V. Rivas, Erina Hara, Julia Smith, Marta Farre, Jitendra Narayan, Gancho Slavov, MIchael N. Romanov, Rui Borges, Joao Paulo Machado, Imran Khan, Mark S. Springer, John Gatesy, Frederico G. Hoffmann, Juan C. Opazo, Olle Hastad, Roger H. Sawyer, Heebal Kim, Kyu-Won Kim, Hyeon Jeong Kim, Seoae Cho, Ning Li, Yinhua Huang, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Mads F. Bertelsen, Elizabeth Derryberry, Wesley Warren, Richard K. Wilson, Shengbin Li, David A. Ray, Richard E. Green, Stephen J. O'Brien, Darren Griffin, Warren E. Johnson, David Haussler, Oliver A. Ryder, Eske Willerslev, Gary R. Graves, Per Alstrom, Jon Fjeldsa, David P. Mindell, Scott V. Edwards, Edward L. Braun, Carsten Rahbek, David W. Burt, Peter Houde, Yong Zhang, Huanming Yang, Jian Wang, Avian Genome Consortium, Erich D. Jarvis, M. Thomas P. Gilbert, Jun Wang
Biology Faculty Articles

Evolutionary Genomics and Adaptive Evolution of the Hedgehog Gene Family (Shh, Ihh and Dhh) in Vertebrates, Joana Pereira, Warren E. Johnson, Stephen J. O'Brien, Erich D. Jarvis, Guojie Zhang, M. Thomas P. Gilbert, Vitor Vasconcelos, Agostinho Antunes
Biology Faculty Articles

Mammalian Keratin Associated Proteins (KRTAPs) Subgenomes: Disentangling Hair Diversity and Adaptation to Terrestrial and Aquatic Environments, Imran Khan, Emanuel Maldonado, Vitor Vasconcelos, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes
Marine & Environmental Sciences Faculty Articles

The Dynamic Proliferation of CanSINEs Mirrors the Complex Evolution of Feliforms, Kathryn B. Walters-Conte, Diana L. E. Johnson, Warren E. Johnson, Stephen J. O'Brien, Jill Pecon-Slattery
Biology Faculty Articles

Sympatric Asian Felid Phylogeography Reveals A Major Indochinese-Sundaic Divergence, Shu-Jin Luo, Yue Zhang, Warren E. Johnson, Lin Miao, Paolo Martelli, Agostinho Antunes, James L. D. Smith, Stephen J. O'Brien
Marine & Environmental Sciences Faculty Articles

Phylogeography and Population History of Leopardus guigna, the Smallest American Felid, Constanza Napolitano, Warren E. Johnson, Jim Sanderson, Stephen J. O'Brien, A. Rus Hoelzel, Rachel Freer, Nigel Dunstone, Kermit Ritland, Carol E. Ritland, Elie Poulin
Biology Faculty Articles

The Tiger Genome and Comparative Analysis with Lion and Snow Leopard Genomes, Yun Sung Cho, Li Hu, Haolong Hou, Hang Lee, Jiaohui Xu, Soowhan Kwon, Sukhun Oh, Hak-Min Kim, Sungwoong Jho, Sangsoo Kim, Young-Ah Shin, Byung Chul Kim, Hyunmin Kim, Chang-uk Kim, Shu-Jin Luo, Warren E. Johnson, Klaus-Peter Koepfli, A. Schmidt-Kunzel, Jason A. Turner, L. Marker, Cindy K. Harper, Susan M. Miller, Wilhelm Jacobs, Laura D. Bertola, Tae Hyung Kim, Sunghoon Lee, Qian Zhou, Hyun-Ju Jung, Xiao Xu, Priyvrat Gadhvi, Pengwei Xu, Yingqi Xiong, Yadan Luo, Shengkai Pan, Caiyun Gou, Xiuhui Chu, Jilin Zhang, Sanyang Liu, Jing He, Ying Chen, Linfeng Yang, Yulan Yang, Jiaju He, Sha Liu, Junyi Wang, Chul Hong Kim, Hwanjong Kwak, Jong-Soo Kim, Seungwoo Hwang, Junsu Ko, Chang-Bae Kim, Sangtae Kim, Damdin Bayarlkhagva, Woon Kee Paek, Seong-Jin Kim, Stephen J. O'Brien, Jun Wang, Jong Bhak
Biology Faculty Articles

Molecular Evidence for a Recent Demographic Expansion in the Puma (Puma concolor) (Mammalia, Felidae), Eunice M. Matte, Camila S. Castilho, Renata A. Miotto, Denis A. Sana, Warren E. Johnson, Stephen J. O'Brien, Thales R. O. de Freitas, Eduardo Eizirik
Biology Faculty Articles

How the Leopard Hides its Spots: ASIP Mutations and Melanism in Wild Cats, Alexsandra Schneider, Victor A. David, Warren E. Johnson, Stephen J. O'Brien, Gregory S. Barsh, Marilyn Menotti-Raymond, Eduardo Eizirik
Biology Faculty Articles

Fish Lateral Line Innovation: Insights into the Evolutionary Genomic Dynamics of a Unique Mechanosensory Organ, Siby Philip, Joao P. Machado, Emanuel Maldonado, Vitor Vasconcelos, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes
Biology Faculty Articles

The Role of Gene Duplication and Unconstrained Selective Pressures in the Melanopsin Gene Family Evolution and Vertebrate Circadian Rhythm Regulation, Rui Borges, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Biology Faculty Articles

Evolution of CRISPs Associated with Toxicoferan-Reptilian Venom and Mammalian Reproduction, Kartik Sunagar, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Biology Faculty Articles

Tissue sampling methods and standards for vertebrate genomics, Pamela B.Y. Wong, Edward O. Wiley, Warren E. Johnson, Oliver A. Ryder, Stephen J. O'Brien, David Haussler, Klaus Peter Koepfli, Marlys L. Houck, Polina Perelman, Gabriela Mastromonaco, Andrew C. Bentley, Byrappa Venkatesh, Ya Ping Zhang, Robert W. Murphy
Biology Faculty Articles

Emerging Viruses in the Felidae: Shifting Paradigms, Stephen J. O'Brien, Jennifer L. Troyer, Meredith Brown, Warren E. Johnson, Agostinho Antunes, Melody E. Roelke, Jill Pecon-Slattery
Biology Faculty Articles

Tissue Sampling Methods and Standards for Vertebrate Genomics, Pamela B. Y. Wong, Edward O. Wiley, Warren E. Johnson, Oliver A. Ryder, Stephen J. O'Brien, David Haussler, Klaus-Peter Koepfli, Marlys L. Houck, Polina L. Perelman, Gabriela Mastromonaco, Andrew C. Bentley, Byrappa Venkatesh, Ya-ping Zhang, Robert W. Murphy, Genome 10K Project Community of Scientists
Biology Faculty Articles

Does Genetic Introgression Improve Female Reproductive Performance? A Test on the Endangered Florida Panther, Jeffrey A. Hostetler, David P. Onorato, Benjamin M. Bolker, Warren E. Johnson, Stephen J. O'Brien, Deborah Jansen, Madan K. Oli
Biology Faculty Articles

Subspecific Status of the Korean Tiger Inferred by Ancient DNA Analysis, Mu-Yeong Lee, Jee Yun Hyun, Seo-Jin Lee, Junghwa An, Eunok Lee, Mi-Sook Min, Junpei Kimura, Shin-ichirio Kawada, Nozomi Kurihara, Shu-Jin Luo, Stephen J. O'Brien, Warren E. Johnson, Hang Lee
Biology Faculty Articles

Adaptive Evolution of the Matrix Extracellular Phosphoglycoprotein in Mammals, Joao P. Machado, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Biology Faculty Articles

Intentional Genetic Introgression Influences Survival of Adults and Subadults in a Small, Inbred Felid Population, John F. Benson, Jeffrey A. Hostetler, David P. Onorato, Warren E. Johnson, Melody E. Roelke, Stephen J. O'Brien, Deborah Jansen, Madan K. Oli
Biology Faculty Articles

A Molecular Phylogeny of Living Primates, Polina L. Perelman, Warren E. Johnson, Christian Roos, Hector Seuanez, Julie E. Horvath, Miguel A. M. Moreira, Bailey Kessing, J. U. Pontius, Melody E. Roelke, Yves Rumpler, Maria P. C. Schneider, Artur Silva, Stephen J. O'Brien, Jill Pecon-Slattery
Biology Faculty Articles

Applying Molecular Genetic Tools to Tiger Conservation, Shu-Jin Luo, Warren E. Johnson, Stephen J. O'Brien
Biology Faculty Articles

Genetic Future for Florida Panthers - Response, Warren E. Johnson, David P. Onorato, Melody E. Roelke, E. Darrell Land, Stephen J. O'Brien
Biology Faculty Articles

Genetic Introgression and the Survival of Florida Panther Kittens, Jeffrey A. Hostetler, David P. Onorato, James D. Nichols, Warren E. Johnson, Melody E. Roelke, Stephen J. O'Brien, Deborah Jansen, Madan K. Oli
Biology Faculty Articles

Genetic Restoration of the Florida Panther, Warren E. Johnson, David P. Onorato, Melody E. Roelke, E. Darrell Land, Mark W. Cunningham, Robert C. Belden, Roy McBride, Deborah Jansen, Mark Lotz, David B. Shindle, JoGayle Howard, David E. Wildt, Linda M. Penfold, Jeffrey A. Hostetler, Madan K. Oli, Stephen J. O'Brien
Biology Faculty Articles

Pattern and Timing of Diversification of the Mammalian Order Carnivora Inferred from Multiple Nuclear Gene Sequences, Eduardo Eizirik, William J. Murphy, Klaus-Peter Koepfli, Warren E. Johnson, J. W. Dragoo, Robert K. Wayne, Stephen J. O'Brien
Biology Faculty Articles

Molecular Evolution and the Role of Oxidative Stress in the Expansion and Functional Diversification of Cytosolic Glutathione Transferases, Rute R. da Fonseca, Warren E. Johnson, Stephen J. O'Brien, Vitor Vasconcelos, Agostinho Antunes
Biology Faculty Articles

Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species, David Haussler, Stephen J. O'Brien, Oliver A. Ryder, F. Keith Barker, Michele Clamp, Andrew J. Crawford, Robert Hanner, Olivier Hanotte, Warren E. Johnson, Jimmy A. McGuire, Webb Miller, Robert W. Murphy, William J. Murphy, Frederick H. Sheldon, Barry Sinervo, Byrappa Venkatesh, Edward O. Wiley, Fred W. Allendorf, George Amato, C. Scott Baker, Aaron Bauer, Albano Beja-Pereira, Eldredge Bermingham, Giacomo Bernardi, Cibele R. Bonvicino, Sydney Brenner, Terry Burke, Joel Cracraft, Mark Diekhans
Biology Faculty Articles

Analyses of Sweet Receptor Gene (Tas1r2) and Preference for Sweet Stimuli in Species of Carnivora, Xia Li, Dieter Glaser, Weihua Li, Warren E. Johnson, Stephen J. O'Brien, Gary K. Beauchamp, Joseph G. Brand
Biology Faculty Articles

Molecular Genetic Evidence for Social Group Disruption of Wild Vicuñas Vicugna vicugna Captured for Wool Harvest in Chile, Ronald J. Sarno, Benito A. Gonzalez, Cristian Bonacic, Beatriz Zapata, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Camelid Genomics: Anticipating the Future, Warren E. Johnson, Polina L. Perelman, Stephen J. O'Brien
Biology Faculty Articles

The Evolutionary Dynamics of the Lion Panthera leo Revealed by Host and Viral Population Genomics, Agostinho Antunes, Jennifer L. Troyer, Melody E. Roelke, Jill Pecon-Slattery, Craig Packer, Christiaan Winterbach, Graham Hemson, Laurence G. Frank, Philip Stander, Ludwig Siefert, Margaret Driciru, Paul J. Funston, Kathy A. Alexander, Katherine C. Prager, Gus Mills, David E. Wildt, Mitch E. Bush, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Inter-Species Hybridization Among Neotropical Cats of the Genus Leopardus, and Evidence for an Introgressive Hybrid Zone Between L. geoffroyi and L. tigrinus in Southern Brazil, T. C. Trigo, T. R. O. Freitas, G. Kunzler, L. Cardoso, C. R. Silva, Warren E. Johnson, Stephen J. O'Brien, Sandro L. Bonatto, Eduardo Eizirik
Biology Faculty Articles

State of Cat Genomics, Stephen J. O'Brien, Warren E. Johnson, Carlos A. Driscoll, J. U. Pontius, Jill Pecon-Slattery, Marilyn Menotti-Raymond
Biology Faculty Articles

Exposure to Disease Agents in the Endangered Iberian Lynx (Lynx pardinus), Melody E. Roelke, Warren E. Johnson, Javier Millan, Francisco Palomares, Eloy Revilla, Alejandro Rodriguez, Javier Calzada, Pablo Ferreras, Luis Leon-Vizcaino, Miguel Delibes, Stephen J. O'Brien
Biology Faculty Articles

Evolution of Feline Immunodeficiency Virus in Felidae: Implications for Human Health and Wildlife Ecology, Jill Pecon-Slattery, Jennifer L. Troyer, Warren E. Johnson, Stephen J. O'Brien
Biology Faculty Articles

FIV Cross-Species Transmission: An Evolutionary Prospective, Jennifer L. Troyer, Sue VandeWoude, Jill Pecon-Slattery, Carl McIntosh, Sam Franklin, Agostinho Antunes, Warren E. Johnson, Stephen J. O'Brien
Biology Faculty Articles

Subspecies Genetic Assignments of Worldwide Captive Tigers Increase Conservation Value of Captive Populations, Shu-Jin Luo, Warren E. Johnson, Janice S. Martenson, Agostinho Antunes, Paolo Martelli, Olga Uphyrkina, Kathy Traylor-Holzer, James L. D. Smith, Stephen J. O'Brien
Biology Faculty Articles

The Adaptive Evolution of the Mammalian Mitochondrial Genome, Rute R. da Fonseca, Warren E. Johnson, Stephen J. O'Brien, Maria J. Ramos, Agostinho Antunes
Biology Faculty Articles

Genetic Characterization of Feline Leukemia Virus from Florida Panthers, Meredith Brown, Mark W. Cunningham, Alfred L. Roca, Jennifer L. Troyer, Warren E. Johnson, Stephen J. O'Brien
Biology Faculty Articles

Patterns of Molecular Genetic Variation Among Cat Breeds, Marilyn Menotti-Raymond, Victor A. David, Solveig M. Pflueger, Kerstin Lindblad-Toh, Claire M. Wade, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Ecological and Biogeographical Inferences on Two Sympatric and Enigmatic Andean Cat Species Using Genetic Identification of Faecal Samples, Constanza Napolitano, Magdalena Bennett, Warren E. Johnson, Stephen J. O'Brien, Pablo A. Marquet, Ivan Barria, Elie Poulin, Agustin Iriarte
Biology Faculty Articles

Molecular Genetic Insights on Cheetah (Acinonyx jubatus) Ecology and Conservation in Namibia, L. Marker, A. J. Pearks Wilkerson, Ronald J. Sarno, Janice S. Martenson, Christian Breitenmoser-Wursten, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Initial Sequence and Comparative Analysis of the Cat Genome, J. U. Pontius, James C. Mullikin, Douglas R. Smith, Agencourt Bioscience Corporation, Kerstin Lindblad-Toh, Sante Gnerre, Michele Clamp, Jean Chang, R. Stephens, Beena A. Neelam, Natalia Volfovsky, Alejandro A. Schaffer, R. Agarwala, Kristina Narfstrom, William J. Murphy, Urs Giger, Alfred L. Roca, Agostinho Antunes, Marilyn Menotti-Raymond, Naoya Yuhki, Jill Pecon-Slattery, Warren E. Johnson, Guillaume Bourque, Glenn Tesler, NISC Comparative Sequencing Program, Stephen J. O'Brien
Biology Faculty Articles

Mitochondrial Introgressions into the Nuclear Genome of the Domestic Cat, Agostinho Antunes, J. U. Pontius, Maria J. Ramos, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Development of Y Chromosome Intraspecific Polymorphic Markers in the Felidae, Shu-Jin Luo, Warren E. Johnson, Victor A. David, Marilyn Menotti-Raymond, R. Stanyon, Qing-xiu Cai, Thomas W. Beck, Naoya Yuhki, Jill Pecon-Slattery, James L. D. Smith, Stephen J. O'Brien
Biology Faculty Articles

The Evolution of CATS, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

The Near Eastern Origin of Cat Domestication, Carlos A. Driscoll, Marilyn Menotti-Raymond, Alfred L. Roca, Karsten Hupe, Warren E. Johnson, Eli Geffen, Eric H. Harley, M. Delibes, Dominique Pontier, Andrew C. Kitchener, Nobuyuki Yamaguchi, Stephen J. O'Brien, David W. Macdonald
Biology Faculty Articles

Evolution of the Male-Determining Gene SRY Within the Cat Family Felidae, V. King, P. N. Goodfellow, A. J. Pearks Wilkerson, Warren E. Johnson, Stephen J. O'Brien, Jill Pecon-Slattery
Biology Faculty Articles

Isolation and Characterization of Microsatellite Markers in Pangolins (Mammalia, Pholidota, Manis spp.), Shu-Jin Luo, Qing-xiu Cai, Victor A. David, Li Zhang, Paolo Martelli, Norman T-L. Lim, Nuno Ferrand, Shih-Chien Chin, Philippe Gaubert, Maria J. Ramos, Stephen J. O'Brien, Agostinho Antunes, Warren E. Johnson
Biology Faculty Articles

Molecular Evidence for Species-Level Distinctions in Clouded Leopards, Valerie A. Buckley-Beason, Warren E. Johnson, William G. Nash, Roscoe Stanyon, Joan C. Menninger, Carlos A. Driscoll, JoGayle Howard, Mitch E. Bush, J. E. Page, Melody E. Roelke, Gary Stone, Paolo Martelli, Ci Wen, Lin Ling, Ratna K. Duraisingam, Phan V. Lam, Stephen J. O'Brien
Biology Faculty Articles

Evolutionary Analysis of a Large mtDNA Translocation (numt) into the Nuclear Genome of the Panthera Genus Species, Jae-Heup Kim, Agostinho Antunes, Shu-Jin Luo, Joan C. Menninger, William G. Nash, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Proceedings in Phylogeography and Genetic Ancestry of Tigers (Panthera tigris) in China and Across Their Range, Shu-Jin Luo, Jae-Heup Kim, Warren E. Johnson, Dale G. Miquelle, Huang Shi-Qiang, Wen-Shi Pan, James L. D. Smith, Stephen J. O'Brien
Biology Faculty Articles

The Late Miocene Radiation of Modern Felidae: A Genetic Assessment, Warren E. Johnson, Eduardo Eizirik, Jill Pecon-Slattery, William J. Murphy, Agostinho Antunes, Emma C. Teeling, Stephen J. O'Brien
Biology Faculty Articles

Big Cat Genomics, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Seroprevalence and Genomic Divergence of Circulating Strains of Feline Immunodeficiency Virus Among Felidae and Hyaenidae Species, Jennifer L. Troyer, Jill Pecon-Slattery, Melody E. Roelke, Warren E. Johnson, Sue VandeWoude, Nuria Vazquez-Salat, Meredith Brown, Laurence Frank, Rosie Woodroffe, Christiaan Winterbach, Hanlie Winterbach, Graham Hemson, Mitchell Bush, Kathleen A. Alexander, Eloy Revilla, Stephen J. O'Brien
Biology Faculty Articles

Phylogeography and Genetic Ancestry of Tigers (Panthera tigris), Shu-Jin Luo, Jae-Heup Kim, Warren E. Johnson, Joelle van der Walt, Janice S. Martenson, Naoya Yuhki, Dale Miquelle, Olga Uphyrkina, John M. Goodrich, Howard Quigley, R. Tilson, Gerald Brady, Paolo Martelli, Vellayan Subramaniam, Charles McDougal, Sun Hean, Shi-Qiang Huang, Wenshi Pan, Ullas K. Karanth, Melvin Sunquist, James L. D. Smith, Stephen J. O'Brien
Biology Faculty Articles

Multiple Paternity and Reproductive Tactics of Free-Ranging American Minks, Mustela vison, Nobuyuki Yamaguchi, Ronald J. Sarno, Warren E. Johnson, Stephen J. O'Brien, D. W. MacDonald
Biology Faculty Articles

Detecting the Vanishing Populations of the Highly Endangered Darwin's Fox, Pseudalopex fulvipes, Carles Vila, Jennifer A. Leonard, J. A. Iriarte, Stephen J. O'Brien, Warren E. Johnson, Robert K. Wayne
Biology Faculty Articles

Phylogenetic and Phylogeographic Analysis of Iberian Lynx Populations, Warren E. Johnson, Jose A. Godoy, F. Palomares, M. Delibes, M. Fernandes, E. Revilla, Stephen J. O'Brien
Biology Faculty Articles

Phylogeography and Subspecies Assessment of Vicuñas in Chile and Bolivia Utilizing mtDNA and Microsatellite Markers: Implications for Vicuña Conservation and Management, Ronald J. Sarno, Lilian Villalba, Cristian Bonacic, Benito Gonzalez, Beatriz Zapata, David W. Macdonald, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Molecular Genetics and Evolution of Melanism in the Cat Family, Eduardo Eizirik, Naoya Yuhki, Warren E. Johnson, Marilyn Menotti-Raymond, Steven S. Hannah, Stephen J. O'Brien
Biology Faculty Articles

Reproductive Status of Endemic Felid Species in Latin American Zoos and Implications for Ex Situ Conservation, William Swanson, Warren E. Johnson, Richard Cambre, S. Citino, K. B. Quigley, Dulce Brousset, R. N. Morais, N. Moreira, Stephen J. O'Brien, David E. Wildt
Biology Faculty Articles

Faecal Genetic Analysis to Determine the Presence and Distribution of Elusive Carnivores: Design and Feasibility for the Iberian Lynx, F. Palomares, Jose A. Godoy, A. Piriz, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Eighteen Polymorphic Microsatellite Markers for the Highly Endangered Spanish Imperial Eagle (Aquila adalberti) and Related Species, Begoña Martinez-Cruz, Victor A. David, Jose A. Godoy, Juan J. Negro, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Patterns of Genetic Diversity in Remaining Giant Panda Populations, Zhi Lu, Warren E. Johnson, Marilyn Menotti-Raymond, Naoya Yuhki, Janice S. Martenson, Susan Mainka, Huang Shi-Qiang, Zheng Zhihe, Guanghan Li, Wenshi Pan, Xiarong Mao, Stephen J. O'Brien
Biology Faculty Articles

Phylogenetics, Genome Diversity and Origin of Modern Leopard, Panthera pardus, Olga Uphyrkina, Warren E. Johnson, Howard Quigley, Dale Miquelle, L. Marker, Stephen J. O'Brien
Biology Faculty Articles

Structure and Patterns of Sequence Variation in the Mitochondrial DNA Control Region of the Great Cats, Jae-Heup Kim, Eduardo Eizirik, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

rPatterns of mtDNA and Microsatellite Variation in an Island and Mainland Population of Guanacos in Southern Chile, Ronald J. Sarno, William L. Franklin, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Molecular Phylogenetics and the Origins of Placental Mammals, William J. Murphy, Eduardo Eizirik, Warren E. Johnson, Ya Ping Zhang, Oliver A. Ryder, Stephen J. O'Brien
Biology Faculty Articles

Phylogeography, Population History and Conservation Genetics of Jaguars (Panthera onca, Mammalia, Felidae), Eduardo Eizirik, Jae-Heup Kim, Marilyn Menotti-Raymond, Peter G. Crawshaw Jr., Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Development of Microsatellite Markers in the Guanaco, Lama guanicoe: Utility for South American Camelids, Ronald J. Sarno, Victor A. David, William L. Franklin, Stephen J. O'Brien, Warren E. Johnson
Biology Faculty Articles

Genomic Ancestry of the American Puma (Puma concolor), Melanie Culver, Warren E. Johnson, Jill Pecon-Slattery, Stephen J. O'Brien
Biology Faculty Articles

Disparate Phylogeographic Patterns of Molecular Genetic Variation in Four Closely Related South American Small Cat Species, Warren E. Johnson, Jill Pecon-Slattery, Eduardo Eizirik, Jae-Heup Kim, Marilyn Menotti-Raymond, Cristian Bonacic, Richard Cambre, Peter G. Crawshaw Jr., Adauto Nunes, Hector N. Seuanez, Miguel A. M. Moreira, K. L. Seymour, Faical Simon, William Swanson
Biology Faculty Articles

Phylogeographic Patterns and Evolution of the Mitochondrial DNA Control Region in Two Neotropical Cats (Mammalia, Felidae), Eduardo Eizirik, Sandro L. Bonatto, Warren E. Johnson, Peter G. Crawshaw Jr., Jean Christophe Vie, Dulce Brousset, Stephen J. O'Brien, Francisco M. Salzano
Biology Faculty Articles

Tracking the Evolution of the Elusive Andean Mountain Cat (Oreailurus jacobita) from Mitochondrial DNA, Warren E. Johnson, Melanie Culver, J. A. Iriarte, Eduardo Eizirik, K. L. Seymour, Stephen J. O'Brien
Biology Faculty Articles

Rates of Nuclear and Cytoplasmic Mitochondrial DNA Sequence Divergence in Mammals, Jose V. Lopez, Melanie Culver, J. Claiborne Stephens, Warren E. Johnson, Stephen James O'Brien
Biology Faculty Articles

Phylogenetic Reconstruction of the Felidae Using 16S rRNA and NADH-5 Mitochondrial Genes, Warren E. Johnson, Stephen J. O'Brien
Biology Faculty Articles

Genetic and Phylogenetic Divergence of Feline Immunodeficiency Virus in the Puma (Puma concolor), Margaret A. Carpenter, Eric W. Brown, Melanie Culver, Warren E. Johnson, Jill Pecon-Slattery, Dulce Brousset, Stephen J. O'Brien
Biology Faculty Articles

Resolution of Recent Radiations Within Three Evolutionary Lineages of Felidae using Mitochondrial Restriction Fragment Length Polymorphism Variation, Warren E. Johnson, Peter A. Dratch, Janice S. Martenson, Stephen J. O'Brien
Biology Faculty Articles