Potential Impacts of Environmental Bacteria on the Microbiota of Loggerhead (Caretta caretta) and Green (Chelonia mydas) Sea Turtle Eggs and Their Hatching Success, Colleen McMaken, Derek Burkholder, Rosanna J. Milligan Dr., Jose V. Lopez
Jose Lopez

Potential Impacts of Environmental Bacteria on the Microbiota of Loggerhead (Caretta caretta) and Green (Chelonia mydas) Sea Turtle Eggs and Their Hatching Success, Colleen McMaken, Derek Burkholder, Rosanna J. Milligan Dr., Jose V. Lopez
Biology Faculty Articles

Morphological and Transcriptional Effects of Crude Oil and Dispersant Exposure on the Marine Sponge Cinachyrella Alloclada, Yvain Desplat, Jacob F. Warner, Emily J. Blake, Nidhi Vijayan, Marie Cuvelier, Patricia Blackwelder, Jose V. Lopez
Biology Faculty Articles

Morphological and transcriptional effects of crude oil and dispersant exposure on the marine sponge Cinachyrella alloclada, Yvain Desplat, Jacob F. Warner, Emily J. Blake, Nidhi Vijayan, Marie Cuvelier, Patricia Blackwelder, Jose V. Lopez
Jose Lopez

Change and stasis of distinct sediment microbiomes across Port Everglades Inlet (PEI) and the adjacent coral reefs, Lauren E. Krausfeldt, Jose V. Lopez, Catherine Bilodeau, Hyo Won Lee, Shelby L. Casali
Biology Faculty Articles

Change and stasis of distinct sediment microbiomes across Port Everglades Inlet (PEI) and the adjacent coral reefs, Lauren E. Krausfeldt, Jose V. Lopez, Catherine Bilodeau, Hyo Won Lee, Shelby L. Casali
Jose Lopez

Three complete mitochondrial genomes of shortfin mako sharks, Isurus oxyrinchus, from the Atlantic and Pacific Oceans, Marissa Mehlrose, Andrea Bernard, Kimberly A. Finnegan, Lauren E. Krausfeldt, Jose V. Lopez, Mahmood Shivji
Jose Lopez

Nitrosomonas supralitoralis sp. nov., an ammonia-oxidizing bacterium from beach sand in a supralittoral zone, Hidetoshi Urakawa, Gabrianna A. Andrews, Jose V. Lopez, Willm Martens-Habbena, Martin G. Klotz, David A. Stahl
Jose Lopez

The wondrous biology, history, and adaptation of the marine invertebrate realm to the genomics era, Jose V. Lopez
Jose Lopez

Why and How to Sequence All Eukaryotic Genomes on the Planet, Jose V. Lopez
Jose Lopez

Chapter 14 - Applying enzymatic biomarkers of the in situ microbial community to assess the risk of coastal sediment, Elisamara Sabadini-Santos, Vanessa de Almeida Moreira, Angelo Cezar Borges de Carvalho, Juliana Ribeiro Nascimento, Jose V. Lopez, Luiz Francisco Fontana, Ana Elisa Fonseca Silveira, Edison Dausacker Bidone
Jose Lopez

Three complete mitochondrial genomes of shortfin mako sharks, Isurus oxyrinchus, from the Atlantic and Pacific Oceans, Marissa Mehlrose, Andrea Bernard, Kimberly A. Finnegan, Lauren E. Krausfeldt, Jose V. Lopez, Mahmood Shivji
Andrea Bernard

The wondrous biology, history, and adaptation of the marine invertebrate realm to the genomics era, Jose V. Lopez
Golden Age of Science

Nitrosomonas supralitoralis sp. nov., an ammonia-oxidizing bacterium from beach sand in a supralittoral zone, Hidetoshi Urakawa, Gabrianna A. Andrews, Jose V. Lopez, Willm Martens-Habbena, Martin G. Klotz, David A. Stahl
Biology Faculty Articles

Three complete mitochondrial genomes of shortfin mako sharks, Isurus oxyrinchus, from the Atlantic and Pacific Oceans, Marissa Mehlrose, Andrea Bernard, Kimberly A. Finnegan, Lauren E. Krausfeldt, Jose V. Lopez, Mahmood Shivji
Mahmood Shivji

Chapter 14 - Applying enzymatic biomarkers of the in situ microbial community to assess the risk of coastal sediment, Elisamara Sabadini-Santos, Vanessa de Almeida Moreira, Angelo Cezar Borges de Carvalho, Juliana Ribeiro Nascimento, Jose V. Lopez, Luiz Francisco Fontana, Ana Elisa Fonseca Silveira, Edison Dausacker Bidone
Biology Faculty Books and Book Chapters

Holo-Transcriptome Sequences from the Tropical Marine Sponge Cinachyrella alloclada, Yvain Desplat, Jacob F. Warner, Jose V. Lopez
Jose Lopez

The Earth BioGenome Project 2020: Starting the clock, Harris A. Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L. Allende, John M. Archibald, Katharine B. Baker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark L. Blaxter, Jing Cai, Nicolette D. Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu-Miaw Chaw, Lei Chen, Anna K. Childers, Jonathan A. Coddington, Dalia A. Conde, Montserrat Corominas, Keith A. Crandall, Andrew J. Crawford, Federica DiPalma, Richard Durbin, ThankGod E. Ebenezer, Scott V. Edwards, Olivier Fedrigo, Paul Flicek, Giulio Formenti, Richard A. Gibbs, M. Thomas P. Gilbert, Melissa M. Goldstein, Jennifer Marshall Graves, Henry T. Greely, Igor V. Grigoriev, Kevin J. Hackett, Neil Hall, David Haussler, Kristofer M. Helgen, Carolyn J. Hogg, Sachiko Isobe, Kjetill Sigurd Jakobson, Axel Janke, Erich D. Jarvis, Warren E. Johnson, Steven J. M. Jones, Elinor K. Karlsson, Paul J. Kersey, Jin-Hyoung Kim, W. John Kress, Shigehiro Kuraku, Mara K. N. Lawniczak, James H. Leebens-Mack, Xueyan Li, Kerstin Lindblad-Toh, Xin Liu, Jose V. Lopez, Tomas Marques-Bonet, Sophie Mazard, Jonna A. K. Mazet, Camila J. Mazzoni, Eugene W. Myers, Rachel J. O'Neill, Sadye Paez, Hyun Park, Gene E. Robinson, Cristina Roquet, Oliver A. Ryder, Jamal S. M. Sabir, H. Bradley Shaffer, Timothy M. Shank, Jacob S. Sherkow, Pamela S. Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano-Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L. Wilson, Xun Xu, Huanming Yang, Anne D. Yoder, Guojie Zhang
Jose Lopez

Standards recommendations for the Earth BioGenome Project, Mara K. Lawniczak, Richard Durbin, Paul Flicek, Kerstin Lindblad-Toh, Xiaofeng Wei, John M. Archibald, William J. Baker, Katherine Belov, Mark L. Blaxter, Tomas Marques-Bonet, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Andrew J. Crawford, Robert P. Davey, Federica Di Palma, Qi Fang, Wilfried Haerty, Neil Hall, Katherine J. Hoff, Kerstin Howe, Erich D. Jarvis, Warren E. Johnson, Rebecca N. Johnson, Paul J. Kersey, Xin Liu, Jose V. Lopez, Eugene W. Myers, Olga Vinnere Pettersson, Adam M. Phillippy, Monica F. Poelchau, Kim D. Pruitt, Arang Rhie, Juan Carlos Castilla-Rubio, Sunil Kumar Sahu, Nicholas A. Salmon, Pamela S. Soltis, David Swarbreck, Françoise Thibaud-Nissen, Sibo Wang, Jill L. Wegrzyn, Guojie Zhang, He Zhang, Harris A. Lewin, Stephen Richards
Jose Lopez

Why sequence all eukaryotes?, Mark Blaxter, John M. Archibald, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Federica Di Palma, Richard Durbin, Scott V. Edwards, Jennifer A.M. Graves, Kevin J. Hackett, Neil Hall, Erich D. Jarvis, Rebecca N. Johnson, Elinor K. Karlsson, W. John Kress, Shigehiro Kuraku, Mara K. N. Lawniczak, Kerstin Lindblad-Toh, Jose V. Lopez, Nancy A. Moran, Gene E. Robinson, Oliver A. Ryder, Beth Shapiro, Pamela S. Soltis, Tandy Warnow, Guojie Zhang, Harris A. Lewin
Jose Lopez

Why and How to Sequence All Eukaryotic Genomes on the Planet, Jose V. Lopez, EarthBioGenome
HCAS Ocean Science Research Symposium

Closing Statements, Jose V. Lopez
HCAS Ocean Science Research Symposium

Why sequence all eukaryotes?, Mark Blaxter, John M. Archibald, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Federica Di Palma, Richard Durbin, Scott V. Edwards, Jennifer A.M. Graves, Kevin J. Hackett, Neil Hall, Erich D. Jarvis, Rebecca N. Johnson, Elinor K. Karlsson, W. John Kress, Shigehiro Kuraku, Mara K. N. Lawniczak, Kerstin Lindblad-Toh, Jose V. Lopez, Nancy A. Moran, Gene E. Robinson, Oliver A. Ryder, Beth Shapiro, Pamela S. Soltis, Tandy Warnow, Guojie Zhang, Harris A. Lewin
Biology Faculty Articles

Standards recommendations for the Earth BioGenome Project, Mara K. Lawniczak, Richard Durbin, Paul Flicek, Kerstin Lindblad-Toh, Xiaofeng Wei, John M. Archibald, William J. Baker, Katherine Belov, Mark L. Blaxter, Tomas Marques-Bonet, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Andrew J. Crawford, Robert P. Davey, Federica Di Palma, Qi Fang, Wilfried Haerty, Neil Hall, Katherine J. Hoff, Kerstin Howe, Erich D. Jarvis, Warren E. Johnson, Rebecca N. Johnson, Paul J. Kersey, Xin Liu, Jose V. Lopez, Eugene W. Myers, Olga Vinnere Pettersson, Adam M. Phillippy, Monica F. Poelchau, Kim D. Pruitt, Arang Rhie, Juan Carlos Castilla-Rubio, Sunil Kumar Sahu, Nicholas A. Salmon, Pamela S. Soltis, David Swarbreck, Françoise Thibaud-Nissen, Sibo Wang, Jill L. Wegrzyn, Guojie Zhang, He Zhang, Harris A. Lewin, Stephen Richards
Biology Faculty Articles

The Earth BioGenome Project 2020: Starting the clock, Harris A. Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L. Allende, John M. Archibald, Katharine B. Baker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark L. Blaxter, Jing Cai, Nicolette D. Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu-Miaw Chaw, Lei Chen, Anna K. Childers, Jonathan A. Coddington, Dalia A. Conde, Montserrat Corominas, Keith A. Crandall, Andrew J. Crawford, Federica DiPalma, Richard Durbin, ThankGod E. Ebenezer, Scott V. Edwards, Olivier Fedrigo, Paul Flicek, Giulio Formenti, Richard A. Gibbs, M. Thomas P. Gilbert, Melissa M. Goldstein, Jennifer Marshall Graves, Henry T. Greely, Igor V. Grigoriev, Kevin J. Hackett, Neil Hall, David Haussler, Kristofer M. Helgen, Carolyn J. Hogg, Sachiko Isobe, Kjetill Sigurd Jakobson, Axel Janke, Erich D. Jarvis, Warren E. Johnson, Steven J. M. Jones, Elinor K. Karlsson, Paul J. Kersey, Jin-Hyoung Kim, W. John Kress, Shigehiro Kuraku, Mara K. N. Lawniczak, James H. Leebens-Mack, Xueyan Li, Kerstin Lindblad-Toh, Xin Liu, Jose V. Lopez, Tomas Marques-Bonet, Sophie Mazard, Jonna A. K. Mazet, Camila J. Mazzoni, Eugene W. Myers, Rachel J. O'Neill, Sadye Paez, Hyun Park, Gene E. Robinson, Cristina Roquet, Oliver A. Ryder, Jamal S. M. Sabir, H. Bradley Shaffer, Timothy M. Shank, Jacob S. Sherkow, Pamela S. Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano-Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L. Wilson, Xun Xu, Huanming Yang, Anne D. Yoder, Guojie Zhang
Biology Faculty Articles

Three complete mitochondrial genomes of shortfin mako sharks, Isurus oxyrinchus, from the Atlantic and Pacific Oceans, Marissa Mehlrose, Andrea Bernard, Kimberly A. Finnegan, Lauren E. Krausfeldt, Jose V. Lopez, Mahmood Shivji
Biology Faculty Articles

Holo-Transcriptome Sequences from the Tropical Marine Sponge Cinachyrella alloclada, Yvain Desplat, Jacob F. Warner, Jose V. Lopez
Biology Faculty Articles

Complete mitogenome sequences of smooth hammerhead sharks, Sphyrna zygaena, from the eastern and western Atlantic, Derek S. Guy, Cassandra L. Ruck, Jose V. Lopez, Mahmood S. Shivji
Jose Lopez

Combined eDNA and Acoustic Analysis Reflects Diel Vertical Migration of Mixed Consortia in the Gulf of Mexico, Cole G. Easson, Kevin M. Boswell, Nicholas Tucker, Joseph D. Warren, Jose V. Lopez
Jose Lopez

Complete genome sequence of microcystis aeruginosa FD4, isolated from a subtropical river in Southwest Florida, Hidetoshi Urakawa, Taylor L. Hancock, Jacob H. Steele, Elizabeth K. Dahedl, Haruka E. Urakawa, Luka K. Ndungu, Lauren E. Krausfeldt, Barry H. Rosen, Jose V. Lopez
Jose Lopez

Complete mitogenome sequences of smooth hammerhead sharks, Sphyrna zygaena, from the eastern and western Atlantic, Derek S. Guy, Cassandra L. Ruck, Jose V. Lopez, Mahmood S. Shivji
Mahmood Shivji

ddPCR Reveals SARS-CoV-2 Variants in Florida Wastewater, Eben Gering, Jacob Colbert, Sarah Schmedes, George Duncan, Jose V. Lopez, Jessy Motes, James Weiss, Taj Azarian, Omer Tekin, Jason Blanton
Eben Gering

Analysis of Sediments from Port Everglades Inlet (PEI) for Microbiome Characterization, Jose V. Lopez, Catherine Bilodeau, Hyo Lee, Lauren E. Krausfeldt
Jose Lopez

Using Probabilities of Enterococci Exceedance and Logistic Regression to Evaluate Long Term Weekly Beach Monitoring Data, Diana Ixchel Aranda, Jose V. Lopez, Helena M. Solo-Gabriele, Jay Fleisher
Jose Lopez

Two Distinct Microbial Communities Revealed in the Sponge Cinachyrella, Marie L. Cuvelier, Emily Blake, Rebecca Mulheron, Peter J. McCarthy, Patricia Blackwelder, Rebecca Vega-Thurber, Jose V. Lopez
Jose Lopez

ddPCR Reveals SARS-CoV-2 Variants in Florida Wastewater, Eben Gering, Jacob Colbert, Sarah Schmedes, George Duncan, Jose V. Lopez, Jessy Motes, James Weiss, Taj Azarian, Omer Tekin, Jason Blanton
Jose Lopez

ddPCR Reveals SARS-CoV-2 Variants in Florida Wastewater, Eben Gering, Jacob Colbert, Sarah Schmedes, George Duncan, Jose V. Lopez, Jessy Motes, James Weiss, Taj Azarian, Omer Tekin, Jason Blanton
George Duncan

Analysis of Sediments from Port Everglades Inlet (PEI) for Microbiome Characterization, Jose V. Lopez, Catherine Bilodeau, Hyo Lee, Lauren E. Krausfeldt
Lopez Laboratory: Genomics & Microbial Data

Microbiome Analyses Demonstrate Specific Communities Within Five Shark Species, Rachael Storo, Cole Easson, Mahmood S. Shivji, Jose V. Lopez
Jose Lopez

Editorial: Deep Pelagic Ecosystem Dynamics in a Highly Impacted Water Column: The Gulf of Mexico After Deepwater Horizon, Tracey Sutton, Kevin M. Boswell, Heather Bracken-Grissom, Jose V. Lopez, Michael Vecchione, Marsh Youngbluth
Jose Lopez

Microscopic and Genetic Characterization of Bacterial Symbionts With Bioluminescent Potential in Pyrosoma atlanticum, Alexis Berger, Patricia L. Blackwelder, Tamara Frank, Tracey Sutton, Nina Pruzinsky, Natalie Slayden, Jose V. Lopez
Jose Lopez

Microbiome Analyses Demonstrate Specific Communities Within Five Shark Species, Rachael Storo, Cole Easson, Mahmood S. Shivji, Jose V. Lopez
Mahmood Shivji

ddPCR Reveals SARS-CoV-2 Variants in Florida Wastewater, Eben Gering, Jacob Colbert, Sarah Schmedes, George Duncan, Jose V. Lopez, Jessy Motes, James Weiss, Taj Azarian, Omer Tekin, Jason Blanton
Biology Faculty Articles

Editorial: Deep Pelagic Ecosystem Dynamics in a Highly Impacted Water Column: The Gulf of Mexico After Deepwater Horizon, Tracey Sutton, Kevin M. Boswell, Heather Bracken-Grissom, Jose V. Lopez, Michael Vecchione, Marsh Youngbluth
Marine & Environmental Sciences Faculty Articles

Microscopic and Genetic Characterization of Bacterial Symbionts With Bioluminescent Potential in Pyrosoma atlanticum, Alexis Berger, Patricia L. Blackwelder, Tamara Frank, Tracey Sutton, Nina Pruzinsky, Natalie Slayden, Jose V. Lopez
Patricia Blackwelder

Microscopic and Genetic Characterization of Bacterial Symbionts With Bioluminescent Potential in Pyrosoma atlanticum, Alexis Berger, Patricia L. Blackwelder, Tamara Frank, Tracey Sutton, Nina Pruzinsky, Natalie Slayden, Jose V. Lopez
Tamara Frank

Microscopic and Genetic Characterization of Bacterial Symbionts With Bioluminescent Potential in Pyrosoma atlanticum, Alexis Berger, Patricia L. Blackwelder, Tamara Frank, Tracey Sutton, Nina Pruzinsky, Natalie Slayden, Jose V. Lopez
Tracey Sutton

Editorial: Deep Pelagic Ecosystem Dynamics in a Highly Impacted Water Column: The Gulf of Mexico After Deepwater Horizon, Tracey Sutton, Kevin M. Boswell, Heather Bracken-Grissom, Jose V. Lopez, Michael Vecchione, Marsh Youngbluth
Tracey Sutton

Microscopic and Genetic Characterization of Bacterial Symbionts With Bioluminescent Potential in Pyrosoma atlanticum, Alexis Berger, Patricia L. Blackwelder, Tamara Frank, Tracey Sutton, Nina Pruzinsky, Natalie Slayden, Jose V. Lopez
Biology Faculty Articles

Microbiome Analyses Demonstrate Specific Communities Within Five Shark Species, Rachael Storo, Cole Easson, Mahmood S. Shivji, Jose V. Lopez
Biology Faculty Articles

Complete genome sequence of microcystis aeruginosa FD4, isolated from a subtropical river in Southwest Florida, Hidetoshi Urakawa, Taylor L. Hancock, Jacob H. Steele, Elizabeth K. Dahedl, Haruka E. Urakawa, Luka K. Ndungu, Lauren E. Krausfeldt, Barry H. Rosen, Jose V. Lopez
Biology Faculty Articles

Microbial Community Shift Under Exposure of Dredged Sediments From a Eutrophic Bay, Juliana R. Nascimento, Cole Easson, Diogo de A. Jurelevicius, Jose V. Lopez, Edison D. Bidone, Elisamara Sabadini-Santos
Jose Lopez

Combined eDNA and Acoustic Analysis Reflects Diel Vertical Migration of Mixed Consortia in the Gulf of Mexico, Cole G. Easson, Kevin M. Boswell, Nicholas Tucker, Joseph D. Warren, Jose V. Lopez
Biology Faculty Articles

Microbial Community Shift Under Exposure of Dredged Sediments From a Eutrophic Bay, Juliana R. Nascimento, Cole Easson, Diogo de A. Jurelevicius, Jose V. Lopez, Edison D. Bidone, Elisamara Sabadini-Santos
Biology Faculty Articles

Metagenomic characterization of the cyanobacterial harmful algal blooms in Lake Okeechobee, Lauren E. Krausfeldt, Barry Rosen, Viviana Mazzei, Eric Fortman, Elizaveta Shmakova, Jose V. Lopez
HCAS Ocean Science Research Symposium

Metagenomic characterization of the cyanobacterial harmful algal blooms in Lake Okeechobee, Lauren E. Krausfeldt, Barry Rosen, Viviana Mazzei, Eric Fortman, Elizaveta Shmakova, Jose V. Lopez
Jose Lopez

Characterizing Marine Biodiversity through the Global Invertebrate Genomics Alliance (GIGA), Jose V. Lopez
Jose Lopez

Characterizing Marine Biodiversity through the Global Invertebrate Genomics Alliance (GIGA), Jose V. Lopez
Biology Faculty Proceedings, Presentations, Speeches, Lectures

An Example of Microbiology Crowdfunding: The Skin Deep MIcrobiome Project, Jose V. Lopez, Renee Potens, Jorie L. Skutas, Nidhi Vijayan, Kyle Roebuck
Jose Lopez

Investigating the Microbiota of Stormwater Treatment Areas, R. Harkas, Jose V. Lopez, Paul Baldauf, Aarti Raja
Jose Lopez

Investigating the Microbiota of Stormwater Treatment Areas, R. Harkas, Jose V. Lopez, Paul Baldauf, Aarti Raja
Aarti Raja

Multiple Facets of Marine Invertebrate Conservation Genomics, Jose V. Lopez, Bishoy Kamel, Monica Medina, Timothy Collins, Iliana B. Baums
Biology Faculty Articles

Investigating the Microbiota of Stormwater Treatment Areas, R. Harkas, Jose V. Lopez, Paul Baldauf, Aarti Raja
Paul Baldauf

Multiple Facets of Marine Invertebrate Conservation Genomics, Jose V. Lopez, Bishoy Kamel, Monica Medina, Timothy Collins, Iliana B. Baums
Jose Lopez

Cooperation and Competition Shape Ecological Resistance During Periodic Spatial Disturbance of Engineered Bacteria, Cortney E. Wilson, Allison J. Lopatkin, Travis J. A. Craddock, William W. Driscoll, Omar T. Eldakar, Jose V. Lopez, Robert P. Smith
Travis Craddock

Investigating the Microbiota of Stormwater Treatment Areas, R. Harkas, Jose V. Lopez, Paul Baldauf, Aarti Raja
Biology Faculty Proceedings, Presentations, Speeches, Lectures

Bleaching Events Regulate Shifts from Corals to Excavating Sponges in Algae-Dominated Reefs, Andia Chaves Fonnegra, Bernhard Riegl, Sven Zea, Jose V. Lopez, Tyler B. Smith, Marilyn Brandt, David S. Gilliam
David Gilliam

Bleaching Events Regulate Shifts from Corals to Excavating Sponges in Algae-Dominated Reefs, Andia Chaves Fonnegra, Bernhard Riegl, Sven Zea, Jose V. Lopez, Tyler B. Smith, Marilyn Brandt, David S. Gilliam
Bernhard Riegl

Microbiomes and Dynamic Genomes of Anglerfish Bacterial Symbionts in the Gulf of Mexico, Jose V. Lopez, Lindsay Freed, Cole Easson, Dana Feder, Tracey Sutton, Dante Fenolio, Tory Hendry
Tracey Sutton

Deep-Pelagic Research in the Gulf of Mexico: The DEEPEND Consortium, Tracey Sutton, April Cook, Kevin M. Boswell, Heather D. Bracken-Grissom, Sergio DeRada, David English, Ron Eytan, C. Hu, Matthew Johnston, Heather Judkins, Chad Lembke, Jose V. Lopez, J. Moore, M. Nizinski, Brad Penta, Isabel C. Romero, Jay R. Rooker, Mahmood S. Shivji, Michael Vecchione, D. Wells, Marsh Youngbluth, D. Fenolio, Tamara Frank
Matthew Johnston

Is There a Link between Aging and Microbiome Diversity in Exceptional Mammalian Longevity?, Graham M. Hughes, John Leech, Sebastien J. Puechmaille, Jose V. Lopez, Emma C. Teeling
Jose Lopez

Microbiomes and Dynamic Genomes of Anglerfish Bacterial Symbionts in the Gulf of Mexico, Jose V. Lopez, Lindsay Freed, Cole Easson, Dana Feder, Tracey Sutton, Dante Fenolio, Tory Hendry
Jose Lopez

Bleaching Events Regulate Shifts from Corals to Excavating Sponges in Algae-Dominated Reefs, Andia Chaves Fonnegra, Bernhard Riegl, Sven Zea, Jose V. Lopez, Tyler B. Smith, Marilyn Brandt, David S. Gilliam
Jose Lopez

Is There a Link between Aging and Microbiome Diversity in Exceptional Mammalian Longevity?, Graham M. Hughes, John Leech, Sebastien J. Puechmaille, Jose V. Lopez, Emma C. Teeling
Biology Faculty Articles

Microbiomes and Dynamic Genomes of Anglerfish Bacterial Symbionts in the Gulf of Mexico, Jose V. Lopez, Lindsay Freed, Cole Easson, Dana Feder, Tracey Sutton, Dante Fenolio, Tory Hendry
HCAS Ocean Science Research Symposium

Bleaching Events Regulate Shifts from Corals to Excavating Sponges in Algae-Dominated Reefs, Andia Chaves Fonnegra, Bernhard Riegl, Sven Zea, Jose V. Lopez, Tyler B. Smith, Marilyn Brandt, David S. Gilliam
Marine & Environmental Sciences Faculty Articles

Asynchronous Reproduction and Multi-Spawning in the Coral-Excavating Sponge Cliona delitrix, Andia Chaves Fonnegra, Manuel Maldonado, Patricia Blackwelder, Jose V. Lopez
Patricia Blackwelder

Deep-Pelagic Research in the Gulf of Mexico: The DEEPEND Consortium, Tracey Sutton, April Cook, Kevin M. Boswell, Heather D. Bracken-Grissom, Sergio DeRada, David English, Ron Eytan, C. Hu, Matthew Johnston, Heather Judkins, Chad Lembke, Jose V. Lopez, J. Moore, M. Nizinski, Brad Penta, Isabel C. Romero, Jay R. Rooker, Mahmood S. Shivji, Michael Vecchione, D. Wells, Marsh Youngbluth, D. Fenolio, Tamara Frank
Tamara Frank

A Molecular Systematic Survey of Cultured Microbial Associates of Deep-Water Marine Invertebrates, Karen S. Sfanos, Dedra K. Harmody, Phat Dang, Angela Ledger, Shirley A. Pomponi, Peter McCarthy, Jose V. Lopez
Jose Lopez

Anglerfish Bacterial Symbionts and Seawater from the Northern Gulf of Mexico, L. Freed, D. Fenolio, Cole Easson, T. Hendry, Tracey Sutton, Jose V. Lopez
Jose Lopez

Asynchronous Reproduction and Multi-Spawning in the Coral-Excavating Sponge Cliona delitrix, Andia Chaves Fonnegra, Manuel Maldonado, Patricia Blackwelder, Jose V. Lopez
Jose Lopez

Genetic Variation of the Scleractinian Coral Stylophora pistillata, from Western Pacific Reefs, M. Takabayashi, D. Carter, Jose V. Lopez, O. Hoegh-Guldberg
Jose Lopez

Characterization of Genetic Markers for In Vitro Cell Line Identification of the Marine Sponge Axinella corrugata, Jose V. Lopez, C. L. Peterson, Robin Willoughby, A. E. Wright, E. Enright, S. Zoladz, John K. Reed, Shirley A. Pomponi
Jose Lopez

A New Prokaryotic Farnesyldiphosphate Synthase from the Octocoral Eunicea fusca: Differential Display, Inverse PCR, Cloning, and Characterization, Llanie K. Ranzer, Thomas B. Bruck, Wolfram M. Brück, Jose V. Lopez, Russell G. Kerr
Jose Lopez

Complete Nucleotide Sequences of the Domestic Cat (Felis catus) Mitochondrial Genome and a Transposed mtDNA Tandem Repeat (Numt) in the Nuclear Genome, Jose V. Lopez, Stanley Cevario, Stephen J. O'Brien
Jose Lopez

Deep-Pelagic Research in the Gulf of Mexico: The DEEPEND Consortium, Tracey Sutton, April Cook, Kevin M. Boswell, Heather D. Bracken-Grissom, Sergio DeRada, David English, Ron Eytan, C. Hu, Matthew Johnston, Heather Judkins, Chad Lembke, Jose V. Lopez, J. Moore, M. Nizinski, Brad Penta, Isabel C. Romero, Jay R. Rooker, Mahmood S. Shivji, Michael Vecchione, D. Wells, Marsh Youngbluth, D. Fenolio, Tamara Frank
Jose Lopez

Genetic and Phylogenetic Evidence for Horizontal Gene Transfer Among Ecologically Disparate Groups of Marine Vibrio, Maria Hoffman, Steven R. Monday, Peter J. McCarthy, Jose V. Lopez, Markus Fischer, Eric W. Brown
Jose Lopez

HSV-2-induced Tumorigenicity in HPV 16-immortalized Human Genital Keratinocytes, Joseph A. Dipaolo, Craig D. Woodworth, Nicholas C. Popescu, Debra L. Koval, Jose V. Lopez, Jay Doniger
Jose Lopez

HBMMD: An Enhanced Database of the Microorganisms Associated with Deeper Water Marine Invertebrates, Aravinda S. Gunasekera, Karen S. Sfanos, Dedra K. Harmody, Shirley A. Pomponi, Peter J. McCarthy, Jose V. Lopez
Jose Lopez

Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples, Cruises DP01 and DP02 from May 2015 - August 2015, Cole Easson, Jose V. Lopez
Jose Lopez

Complete bacterial symbiont genome sequences from anglerfish Cryptopsaras couesii and Melanocetus johnsonii, Lindsay L. Freed, Dana Fadera, Dante Fenolio, Tracey Sutton, Jose V. Lopez
Jose Lopez

Cooperation and Competition Shape Ecological Resistance During Periodic Spatial Disturbance of Engineered Bacteria, Cortney E. Wilson, Allison J. Lopatkin, Travis J. A. Craddock, William W. Driscoll, Omar T. Eldakar, Jose V. Lopez, Robert P. Smith
Jose Lopez

Patterns of Population Structure for Inshore Bottlenose Dolphins along the Eastern United States, Vincent P. Richards, Thomas W. Greig, Patricia A. Fair, Stephen D. McCullouch, Christine Politz, Ada Natoli, Carlos A. Driscoll, A. Rus Hoelzel, Victor David, Gregory D. Bossart, Jose V. Lopez
Jose Lopez

Molecular Phylogeny of Mitochondrial Cytochrome b and 12S rRNA Sequences in the Felidae: Ocelot and Domestic Cat Lineages, Ryuichi Masuda, Jose V. Lopez, Jill Pecon Slattery, Naoya Yuhki, Stephen James O'Brien
Jose Lopez

Molecular Determination of Species Boundaries in Corals: Genetic Analysis of the Montastraea annularis Complex Using Amplified Fragment Length Polymorphisms and a Microsatellite Marker, Jose V. Lopez, Ralf Kersanach, Stephen A. Rehner, Nancy Knowlton
Jose Lopez

Polyketide Synthase Genes from Marine Dinoflagellates, R. V. Snyder, P. D. L. Gibbs, A. Palacios, L. Abiy, R. Dickey, Jose V. Lopez, K. S. Rein
Jose Lopez

Rapid Evolution of a Heteroplasmic Repetitive Sequence in the Mitochondrial DNA Control Region of Carnivores, A Rus Hoelzel, Jose V. Lopez, Gabriel A. Dover, Stephen James O'Brien
Jose Lopez

Numt, a Recent Transfer and Tandem Amplification of Mitochondrial DNA in the Nuclear Genome of the Domestic Cat, Jose V. Lopez, Naoya Yuhki, Ryuichi Masuda, William Modi, Stephen James O'Brien
Jose Lopez

Naturally Mosaic Operons for Secondary Metabolite Biosynthesis: Variability and Putative Horizontal Transfer of Discrete Catalytic Domains of the Epothilone Polyketide Synthase Locus, Jose V. Lopez
Jose Lopez

Localization of Polyketide Synthase Encoding Genes to the Toxic Dinoflagellate Karenia brevis, Richard V. Snyder, Maria A. Guerrero, Christopher D. Sinigalliano, Jamie Winshell, Roberto Perez, Jose V. Lopez, Kathleen S. Rein
Jose Lopez

Rates of Nuclear and Cytoplasmic Mitochondrial DNA Sequence Divergence in Mammals, Jose V. Lopez, Melanie Culver, J. Claiborne Stephens, Warren E. Johnson, Stephen James O'Brien
Jose Lopez

The Long and Short of Nuclear Mitochondrial DNA (Numt) Lineages, Jose V. Lopez, J. Claiborne Stephens, Stephen J. O'Brien
Jose Lopez

Population Dynamics of Vibrio spp. Associated with Marine Sponge Microcosms, Maria Hoffman, Markus Fischer, Andrea Ottesen, Peter J. McCarthy, Jose V. Lopez, Eric W. Brown, Steven R. Monday
Jose Lopez

Use of Real-Time qPCR to Quantify Members of the Unculturable Heterotrophic Bacterial Community in a Deep Sea Marine Sponge, Vetulina sp., M. Cassler, C. L. Peterson, A. Ledger, Shirley A. Pomponi, A. E. Wright, R. Winegar, P. J. McCarthy, Jose V. Lopez
Jose Lopez

Vibrio caribbeanicus sp. nov., Isolated from the Marine Sponge Scleritoderma cyanea, Maria Hoffman, Steven R. Monday, Marc W. Allard, Errol A. Strain, Paul Whittaker, Marianna Naum, Peter J. McCarthy, Jose V. Lopez, Markus Fischer, Eric W. Brown
Jose Lopez

Molecular Phylogeny of Mitochondrial Cytochrome b and 12S rRNA Sequences in the Felidae: Ocelot and Domestic Cat Lineages, Ryuichi Masuda, Jose V. Lopez, Jill Pecon Slattery, Naoya Yuhki, Stephen James O'Brien
Stephen O'Brien

Rates of Nuclear and Cytoplasmic Mitochondrial DNA Sequence Divergence in Mammals, Jose V. Lopez, Melanie Culver, J. Claiborne Stephens, Warren E. Johnson, Stephen James O'Brien
Stephen O'Brien

Rapid Evolution of a Heteroplasmic Repetitive Sequence in the Mitochondrial DNA Control Region of Carnivores, A Rus Hoelzel, Jose V. Lopez, Gabriel A. Dover, Stephen James O'Brien
Stephen O'Brien

Numt, a Recent Transfer and Tandem Amplification of Mitochondrial DNA in the Nuclear Genome of the Domestic Cat, Jose V. Lopez, Naoya Yuhki, Ryuichi Masuda, William Modi, Stephen James O'Brien
Stephen O'Brien

Deep-Pelagic Research in the Gulf of Mexico: The DEEPEND Consortium, Tracey Sutton, April Cook, Kevin M. Boswell, Heather D. Bracken-Grissom, Sergio DeRada, David English, Ron Eytan, C. Hu, Matthew Johnston, Heather Judkins, Chad Lembke, Jose V. Lopez, J. Moore, M. Nizinski, Brad Penta, Isabel C. Romero, Jay R. Rooker, Mahmood S. Shivji, Michael Vecchione, D. Wells, Marsh Youngbluth, D. Fenolio, Tamara Frank
Mahmood Shivji

Cooperation and Competition Shape Ecological Resistance During Periodic Spatial Disturbance of Engineered Bacteria, Cortney E. Wilson, Allison J. Lopatkin, Travis J. A. Craddock, William W. Driscoll, Omar T. Eldakar, Jose V. Lopez, Robert P. Smith
Robert Smith

Anglerfish Bacterial Symbionts and Seawater from the Northern Gulf of Mexico, L. Freed, D. Fenolio, Cole Easson, T. Hendry, Tracey Sutton, Jose V. Lopez
Tracey Sutton

Deep-Pelagic Research in the Gulf of Mexico: The DEEPEND Consortium, Tracey Sutton, April Cook, Kevin M. Boswell, Heather D. Bracken-Grissom, Sergio DeRada, David English, Ron Eytan, C. Hu, Matthew Johnston, Heather Judkins, Chad Lembke, Jose V. Lopez, J. Moore, M. Nizinski, Brad Penta, Isabel C. Romero, Jay R. Rooker, Mahmood S. Shivji, Michael Vecchione, D. Wells, Marsh Youngbluth, D. Fenolio, Tamara Frank
Tracey Sutton

Complete bacterial symbiont genome sequences from anglerfish Cryptopsaras couesii and Melanocetus johnsonii, Lindsay L. Freed, Dana Fadera, Dante Fenolio, Tracey Sutton, Jose V. Lopez
Tracey Sutton

Complete mitogenome sequences of smooth hammerhead sharks, Sphyrna zygaena, from the eastern and western Atlantic, Derek S. Guy, Cassandra L. Ruck, Jose V. Lopez, Mahmood S. Shivji
Biology Faculty Articles

Complete bacterial symbiont genome sequences from anglerfish Cryptopsaras couesii and Melanocetus johnsonii, Lindsay L. Freed, Dana Fadera, Dante Fenolio, Tracey Sutton, Jose V. Lopez
DEEPEND Datasets

Cooperation and Competition Shape Ecological Resistance During Periodic Spatial Disturbance of Engineered Bacteria, Cortney E. Wilson, Allison J. Lopatkin, Travis J. A. Craddock, William W. Driscoll, Omar T. Eldakar, Jose V. Lopez, Robert P. Smith
Omar Eldakar

DEEPEND: Deep-Pelagic Nekton Dynamics of the Gulf of Mexico, Tracey Sutton, April B. Cook, Kevin M. Boswell, Heather D. Bracken-Grissom, David Wells, David English, Ron Eytan, Dante Fenolio, Tamara M. Frank, Chad Lembke, Jose V. Lopez, Jon Moore, Martha Nizinski, Isabel C. Romero, Jay R. Rooker, Mahmood S. Shivji, Michael Vecchione, Brad Penta, Marsh Youngbluth
Jose Lopez

DEEPEND: Deep-Pelagic Nekton Dynamics of the Gulf of Mexico, Tracey Sutton, April B. Cook, Kevin M. Boswell, Heather D. Bracken-Grissom, David Wells, David English, Ron Eytan, Dante Fenolio, Tamara M. Frank, Chad Lembke, Jose V. Lopez, Jon Moore, Martha Nizinski, Isabel C. Romero, Jay R. Rooker, Mahmood S. Shivji, Michael Vecchione, Brad Penta, Marsh Youngbluth
Jose Lopez

Advancing Genomics Through the Global Invertebrate Genomics Alliance (GIGA), Christian R. Voolstra, Gert Wörheide, Jose V. Lopez
Jose Lopez

Diversity, Structure and Convergent Evolution of the Global Sponge Microbiome, Torsten Thomas, Lucas Moitinho-Silva, Miguel Lurgi, Johannes R. Bjork, Cole Easson, Carmen Astudillo-Garcia, Julie B. Olson, Patrick M. Erwin, Susanna Lopez-Legentil, Heidi Luter, Andia Chaves Fonnegra, Rodrigo Costa, Peter J. Schupp, Laura Steindler, Dirk Erpenbeck, Jack Gilbert, Rob Knight, Gail Ackermann, Jose V. Lopez, Michael W. Taylor, Robert W. Thacker, Jose M. Montoya, Ute Hentschel, Nicole S. Webster
Jose Lopez

The Human Microbiome: An Emerging Tool in Forensics, Jarrad T. Hampton-Marcell, Jose V. Lopez, Jack A. Gilbert
Jose Lopez

Understanding Deep-Pelagic Ecosystem Dynamics: A New Research Initiative in the Gulf of Mexico (DEEPEND), Tracey Sutton, K. M. Boswell, Heather D. Bracken-Grissom, April B. Cook, S. DeRada, D. English, R. Eytan, D. Fenolio, Tamara M. Frank, C. Hu, Matthew Johnston, H. Judkins, C. Lembke, Jose V. Lopez, J. A. Moore, M. Nizinski, B. Penta, I. C. Romero, J. R. Rooker, Mahmood S. Shivji, R. J. D. Wells, Michael Vecchione, M. Youngbluth
Jose Lopez

Deep-Pelagic Research in the Gulf of Mexico: The DEEPEND Consortium, Tracey Sutton, April Cook, Kevin M. Boswell, Heather D. Bracken-Grissom, Sergio DeRada, David English, Ron Eytan, C. Hu, Matthew Johnston, Heather Judkins, Chad Lembke, Jose V. Lopez, J. Moore, M. Nizinski, Brad Penta, Isabel C. Romero, Jay R. Rooker, Mahmood S. Shivji, Michael Vecchione, D. Wells, Marsh Youngbluth, D. Fenolio, Tamara Frank
Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The Human Microbiome: An Emerging Tool in Forensics, Jarrad T. Hampton-Marcell, Jose V. Lopez, Jack A. Gilbert
Biology Faculty Articles

Advancing Genomics Through the Global Invertebrate Genomics Alliance (GIGA), Christian R. Voolstra, GIGA Community of Scientists, Gert Wörheide, Jose V. Lopez
Biology Faculty Articles

Cooperation and Competition Shape Ecological Resistance During Periodic Spatial Disturbance of Engineered Bacteria, Cortney E. Wilson, Allison J. Lopatkin, Travis J. A. Craddock, William W. Driscoll, Omar T. Eldakar, Jose V. Lopez, Robert P. Smith
Biology Faculty Articles

Anglerfish Bacterial Symbionts and Seawater from the Northern Gulf of Mexico, L. Freed, D. Fenolio, Cole Easson, T. Hendry, Tracey Sutton, Jose V. Lopez
Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples, Cruises DP01 and DP02 from May 2015 - August 2015, Cole Easson, Jose V. Lopez
DEEPEND Datasets

DEEPEND: Deep-Pelagic Nekton Dynamics of the Gulf of Mexico, Tracey Sutton, April B. Cook, Kevin M. Boswell, Heather D. Bracken-Grissom, David Wells, David English, Ron Eytan, Dante Fenolio, Tamara M. Frank, Chad Lembke, Jose V. Lopez, Jon Moore, Martha Nizinski, Isabel C. Romero, Jay R. Rooker, Mahmood S. Shivji, Michael Vecchione, Brad Penta, Marsh Youngbluth
Mahmood Shivji

DEEPEND: Deep-Pelagic Nekton Dynamics of the Gulf of Mexico, Tracey Sutton, April B. Cook, Kevin M. Boswell, Heather D. Bracken-Grissom, David Wells, David English, Ron Eytan, Dante Fenolio, Tamara M. Frank, Chad Lembke, Jose V. Lopez, Jon Moore, Martha Nizinski, Isabel C. Romero, Jay R. Rooker, Mahmood S. Shivji, Michael Vecchione, Brad Penta, Marsh Youngbluth
Mahmood Shivji

Understanding Deep-Pelagic Ecosystem Dynamics: A New Research Initiative in the Gulf of Mexico (DEEPEND), Tracey Sutton, K. M. Boswell, Heather D. Bracken-Grissom, April B. Cook, S. DeRada, D. English, R. Eytan, D. Fenolio, Tamara M. Frank, C. Hu, Matthew Johnston, H. Judkins, C. Lembke, Jose V. Lopez, J. A. Moore, M. Nizinski, B. Penta, I. C. Romero, J. R. Rooker, Mahmood S. Shivji, R. J. D. Wells, Michael Vecchione, M. Youngbluth
Mahmood Shivji

Scleractinian Coral Recruitment to Reefs Physically Damaged by Ship Groundings, E. T. Rubin, Alison L. Moulding, Jose V. Lopez, David S. Gilliam, V. N. Kosmynin, Richard E. Dodge
Richard Dodge

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability, James R. White, Jignasa Patel, Andrea Ottesen, Gabriela Arce, Patricia Blackwelder, Jose V. Lopez
Patricia Blackwelder

Two Distinct Microbial Communities Revealed in the Sponge Cinachyrella, Marie L. Cuvelier, Emily Blake, Rebecca Mulheron, Peter J. McCarthy, Patricia Blackwelder, Rebecca Vega-Thurber, Jose V. Lopez
Patricia Blackwelder

Scleractinian Coral Recruitment to Reefs Physically Damaged by Ship Groundings, E. T. Rubin, Alison L. Moulding, Jose V. Lopez, David S. Gilliam, V. N. Kosmynin, Richard E. Dodge
David Gilliam

Co-Cultures of Pseudomonas aeruginosa and Roseobacter denitrificans Reveal Shifts in Gene Expression Levels Compared to Solo Cultures, Crystal A. Conway, Nwadiuto Esiobu, Jose V. Lopez
Jose Lopez

Comparison of Bacterial Diversity within the Coral Reef Sponge, Axinella corrugata, and the Encrusting Coral Erythropodium caribaeorum, Jose V. Lopez, L. K. Ranzer, A. Ledger, B. Schoch, A. Duckworth, P. J. McCarthy, R. G. Kerr
Jose Lopez

Andros Island Flora and Fauna in the New Millennium, Jose V. Lopez, Cheryl L. Peterson, Felix Morales, Luther Brown
Jose Lopez

Dynamics of Marine Bacterial Community Diversity of the Coastal Waters of the Reefs, Inlets, and Wastewater Outfalls of Southeast Florida, Alexandra Mandina Campbell, Jay Fleisher, Christopher D. Sinigalliano, James R. White, Jose V. Lopez
Jose Lopez

Discrimination of Species in the Montastrea annularis Complex using Multiple Genetic Loci, Jose V. Lopez, Nancy Knowlton
Jose Lopez

Diverse Bacterial PKS Sequences Derived from Okadaic Acid-Producing Dinoflagellates, Roberto Perez, Li Liu, Jose V. Lopez, Tianying An, Kathleen S. Rein
Jose Lopez

Metabolites from the Marine-Derived Fungus Chromocleista sp. Isolated from a Deep-Water Sediment Sample Collected in the Gulf of Mexico, Young Chul Park, Sarath P. Gunasekera, Jose V. Lopez, Peter J. McCarthy, Amy E. Wright
Jose Lopez

Molecular Techniques Reveal Wide Phyletic Diversity of Heterotrophic Microbes Associated with Discodermia spp. (Porifera: Demospongiae), Jose V. Lopez, Peter J. McCarthy, Kathleen E. Janda, Robin Willoughby, Shirley A. Pomponi
Jose Lopez

Taking a Cat Map: Genome Analysis by Supercomputer, Jose V. Lopez
Jose Lopez

Some Preservation Techniques for (Deep Water) Coral Samples for Subsequent Molecular Studies: A Special Supplement from Harbor Branch Oceanographic Institute, Jose V. Lopez
Jose Lopez

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability, James R. White, Jignasa Patel, Andrea Ottesen, Gabriela Arce, Patricia Blackwelder, Jose V. Lopez
Jose Lopez

Reconstruction of Family-Level Phylogenetic Relationships within Demospongiae (Porifera) Using Nuclear Encoded Housekeeping Genes, Malcolm S. Hill, April L. Hill, Jose V. Lopez, Kevin J. Peterson, Shirley Pomponi, Maria C. Diaz, Robert W. Thacker, Maja Adamska, Nicole Boury-Esnault, Paco Cárdenas, Andia Chaves-Fonnegra, Elizabeth Danka, Bre-Onna De Laine, Dawn Formica, Eduardo Hajdu, Gisele Lobo-Hajdu, Sarah Klontz, Christine C. Morrow, Jignasa Patel, Bernard Picton, Davide Pisani, Deborah Pohlmann, Niamh E. Redmond, John Reed, Stacy Richey, Ana Riesgo, Ewelina Rubin, Zach Russell, Klaus Rützler, Erik A. Sperling, Michael di Stefano, James E. Tarver, Allen G. Collins
Jose Lopez

Suppression Subtractive Hybridization PCR Isolation of cDNAs from a Caribbean Soft Coral, Jose V. Lopez, Angela Ledger, Lory Z. Santiago-Vázquez, Mihai Pop, Dan D. Sommer, Llanie K. Ranzer, Robert A. Feldman, Russell G. Kerr
Jose Lopez

The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes, Jose V. Lopez, Stephen J. O'Brien, Charles Messing, M. Christina Diaz, Nicole D. Fogarty, Matthew Johnston
Jose Lopez

Scleractinian Coral Recruitment to Reefs Physically Damaged by Ship Groundings, E. T. Rubin, Alison L. Moulding, Jose V. Lopez, David S. Gilliam, V. N. Kosmynin, Richard E. Dodge
Jose Lopez

Andros Island Flora and Fauna in the New Millennium, Jose V. Lopez, Cheryl L. Peterson, Felix Morales, Luther Brown
Jose Lopez

Comparison of Bacterial Diversity within the Coral Reef Sponge, Axinella corrugata, and the Encrusting Coral Erythropodium caribaeorum, Jose V. Lopez, L. K. Ranzer, A. Ledger, B. Schoch, A. Duckworth, P. J. McCarthy, R. G. Kerr
Jose Lopez

Diverse Bacterial PKS Sequences Derived from Okadaic Acid-Producing Dinoflagellates, Roberto Perez, Li Liu, Jose V. Lopez, Tianying An, Kathleen S. Rein
Jose Lopez

Co-Cultures of Pseudomonas aeruginosa and Roseobacter denitrificans Reveal Shifts in Gene Expression Levels Compared to Solo Cultures, Crystal A. Conway, Nwadiuto Esiobu, Jose V. Lopez
Jose Lopez

Discrimination of Species in the Montastrea annularis Complex using Multiple Genetic Loci, Jose V. Lopez, Nancy Knowlton
Jose Lopez

Dynamics of Marine Bacterial Community Diversity of the Coastal Waters of the Reefs, Inlets, and Wastewater Outfalls of Southeast Florida, Alexandra Mandina Campbell, Jay Fleisher, Christopher D. Sinigalliano, James R. White, Jose V. Lopez
Jose Lopez

Florida Reef Sponges Harbor Coral Disease-Associated Microbes, Karita Negandhi, Patricia Blackwelder, Alexander V. Ereskovsky, Jose V. Lopez
Jose Lopez

Metabolites from the Marine-Derived Fungus Chromocleista sp. Isolated from a Deep-Water Sediment Sample Collected in the Gulf of Mexico, Young Chul Park, Sarath P. Gunasekera, Jose V. Lopez, Peter J. McCarthy, Amy E. Wright
Jose Lopez

In Vitro Production of Marine-Derived Compounds, Shirley A. Pomponi, Robin Willoughby, Amy E. Wright, Claudia Pecorella, Susan H. Sennett, Jose V. Lopez, Gail Samples
Jose Lopez

Population Structure and Dispersal of the Coral-Excavating Sponge Cliona delitrix, Andia Chaves Fonnegra, Kevin A. Feldheim, Jesse Secord, Jose V. Lopez
Jose Lopez

Molecular Techniques Reveal Wide Phyletic Diversity of Heterotrophic Microbes Associated with Discodermia spp. (Porifera: Demospongiae), Jose V. Lopez, Peter J. McCarthy, Kathleen E. Janda, Robin Willoughby, Shirley A. Pomponi
Jose Lopez

Some Preservation Techniques for (Deep Water) Coral Samples for Subsequent Molecular Studies: A Special Supplement from Harbor Branch Oceanographic Institute, Jose V. Lopez
Jose Lopez

Reconstruction of Family-Level Phylogenetic Relationships within Demospongiae (Porifera) Using Nuclear Encoded Housekeeping Genes, Malcolm S. Hill, April L. Hill, Jose V. Lopez, Kevin J. Peterson, Shirley Pomponi, Maria C. Diaz, Robert W. Thacker, Maja Adamska, Nicole Boury-Esnault, Paco Cárdenas, Andia Chaves-Fonnegra, Elizabeth Danka, Bre-Onna De Laine, Dawn Formica, Eduardo Hajdu, Gisele Lobo-Hajdu, Sarah Klontz, Christine C. Morrow, Jignasa Patel, Bernard Picton, Davide Pisani, Deborah Pohlmann, Niamh E. Redmond, John Reed, Stacy Richey, Ana Riesgo, Ewelina Rubin, Zach Russell, Klaus Rützler, Erik A. Sperling, Michael di Stefano, James E. Tarver, Allen G. Collins
Jose Lopez

Scleractinian Coral Recruitment to Reefs Physically Damaged by Ship Groundings, E. T. Rubin, Alison L. Moulding, Jose V. Lopez, David S. Gilliam, V. N. Kosmynin, Richard E. Dodge
Jose Lopez

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability, James R. White, Jignasa Patel, Andrea Ottesen, Gabriela Arce, Patricia Blackwelder, Jose V. Lopez
Jose Lopez

Taking a Cat Map: Genome Analysis by Supercomputer, Jose V. Lopez
Jose Lopez

Suppression Subtractive Hybridization PCR Isolation of cDNAs from a Caribbean Soft Coral, Jose V. Lopez, Angela Ledger, Lory Z. Santiago-Vázquez, Mihai Pop, Dan D. Sommer, Llanie K. Ranzer, Robert A. Feldman, Russell G. Kerr
Jose Lopez

Andros Island Flora and Fauna in the New Millennium, Jose V. Lopez, Cheryl L. Peterson, Felix Morales, Luther Brown
Jose Lopez

Comparison of Bacterial Diversity within the Coral Reef Sponge, Axinella corrugata, and the Encrusting Coral Erythropodium caribaeorum, Jose V. Lopez, L. K. Ranzer, A. Ledger, B. Schoch, A. Duckworth, P. J. McCarthy, R. G. Kerr
Jose Lopez

Co-Cultures of Pseudomonas aeruginosa and Roseobacter denitrificans Reveal Shifts in Gene Expression Levels Compared to Solo Cultures, Crystal A. Conway, Nwadiuto Esiobu, Jose V. Lopez
Jose Lopez

Diverse Bacterial PKS Sequences Derived from Okadaic Acid-Producing Dinoflagellates, Roberto Perez, Li Liu, Jose V. Lopez, Tianying An, Kathleen S. Rein
Jose Lopez

Discrimination of Species in the Montastrea annularis Complex using Multiple Genetic Loci, Jose V. Lopez, Nancy Knowlton
Jose Lopez

Dynamics of Marine Bacterial Community Diversity of the Coastal Waters of the Reefs, Inlets, and Wastewater Outfalls of Southeast Florida, Alexandra Mandina Campbell, Jay Fleisher, Christopher D. Sinigalliano, James R. White, Jose V. Lopez
Jose Lopez

Metabolites from the Marine-Derived Fungus Chromocleista sp. Isolated from a Deep-Water Sediment Sample Collected in the Gulf of Mexico, Young Chul Park, Sarath P. Gunasekera, Jose V. Lopez, Peter J. McCarthy, Amy E. Wright
Jose Lopez

Molecular Techniques Reveal Wide Phyletic Diversity of Heterotrophic Microbes Associated with Discodermia spp. (Porifera: Demospongiae), Jose V. Lopez, Peter J. McCarthy, Kathleen E. Janda, Robin Willoughby, Shirley A. Pomponi
Jose Lopez

Suppression Subtractive Hybridization PCR Isolation of cDNAs from a Caribbean Soft Coral, Jose V. Lopez, Angela Ledger, Lory Z. Santiago-Vázquez, Mihai Pop, Dan D. Sommer, Llanie K. Ranzer, Robert A. Feldman, Russell G. Kerr
Jose Lopez

Scleractinian Coral Recruitment to Reefs Physically Damaged by Ship Groundings, E. T. Rubin, Alison L. Moulding, Jose V. Lopez, David S. Gilliam, V. N. Kosmynin, Richard E. Dodge
Jose Lopez

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability, James R. White, Jignasa Patel, Andrea Ottesen, Gabriela Arce, Patricia Blackwelder, Jose V. Lopez
Jose Lopez

Some Preservation Techniques for (Deep Water) Coral Samples for Subsequent Molecular Studies: A Special Supplement from Harbor Branch Oceanographic Institute, Jose V. Lopez
Jose Lopez

Reconstruction of Family-Level Phylogenetic Relationships within Demospongiae (Porifera) Using Nuclear Encoded Housekeeping Genes, Malcolm S. Hill, April L. Hill, Jose V. Lopez, Kevin J. Peterson, Shirley Pomponi, Maria C. Diaz, Robert W. Thacker, Maja Adamska, Nicole Boury-Esnault, Paco Cárdenas, Andia Chaves-Fonnegra, Elizabeth Danka, Bre-Onna De Laine, Dawn Formica, Eduardo Hajdu, Gisele Lobo-Hajdu, Sarah Klontz, Christine C. Morrow, Jignasa Patel, Bernard Picton, Davide Pisani, Deborah Pohlmann, Niamh E. Redmond, John Reed, Stacy Richey, Ana Riesgo, Ewelina Rubin, Zach Russell, Klaus Rützler, Erik A. Sperling, Michael di Stefano, James E. Tarver, Allen G. Collins
Jose Lopez

Taking a Cat Map: Genome Analysis by Supercomputer, Jose V. Lopez
Jose Lopez

Diverse Bacterial PKS Sequences Derived from Okadaic Acid-Producing Dinoflagellates, Roberto Perez, Li Liu, Jose V. Lopez, Tianying An, Kathleen S. Rein
Jose Lopez

Dynamics of Marine Bacterial Community Diversity of the Coastal Waters of the Reefs, Inlets, and Wastewater Outfalls of Southeast Florida, Alexandra Mandina Campbell, Jay Fleisher, Christopher D. Sinigalliano, James R. White, Jose V. Lopez
Jose Lopez

Discrimination of Species in the Montastrea annularis Complex using Multiple Genetic Loci, Jose V. Lopez, Nancy Knowlton
Jose Lopez

Co-Cultures of Pseudomonas aeruginosa and Roseobacter denitrificans Reveal Shifts in Gene Expression Levels Compared to Solo Cultures, Crystal A. Conway, Nwadiuto Esiobu, Jose V. Lopez
Jose Lopez

Andros Island Flora and Fauna in the New Millennium, Jose V. Lopez, Cheryl L. Peterson, Felix Morales, Luther Brown
Jose Lopez

Comparison of Bacterial Diversity within the Coral Reef Sponge, Axinella corrugata, and the Encrusting Coral Erythropodium caribaeorum, Jose V. Lopez, L. K. Ranzer, A. Ledger, B. Schoch, A. Duckworth, P. J. McCarthy, R. G. Kerr
Jose Lopez

Molecular Techniques Reveal Wide Phyletic Diversity of Heterotrophic Microbes Associated with Discodermia spp. (Porifera: Demospongiae), Jose V. Lopez, Peter J. McCarthy, Kathleen E. Janda, Robin Willoughby, Shirley A. Pomponi
Jose Lopez

Metabolites from the Marine-Derived Fungus Chromocleista sp. Isolated from a Deep-Water Sediment Sample Collected in the Gulf of Mexico, Young Chul Park, Sarath P. Gunasekera, Jose V. Lopez, Peter J. McCarthy, Amy E. Wright
Jose Lopez

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability, James R. White, Jignasa Patel, Andrea Ottesen, Gabriela Arce, Patricia Blackwelder, Jose V. Lopez
Jose Lopez

Reconstruction of Family-Level Phylogenetic Relationships within Demospongiae (Porifera) Using Nuclear Encoded Housekeeping Genes, Malcolm S. Hill, April L. Hill, Jose V. Lopez, Kevin J. Peterson, Shirley Pomponi, Maria C. Diaz, Robert W. Thacker, Maja Adamska, Nicole Boury-Esnault, Paco Cárdenas, Andia Chaves-Fonnegra, Elizabeth Danka, Bre-Onna De Laine, Dawn Formica, Eduardo Hajdu, Gisele Lobo-Hajdu, Sarah Klontz, Christine C. Morrow, Jignasa Patel, Bernard Picton, Davide Pisani, Deborah Pohlmann, Niamh E. Redmond, John Reed, Stacy Richey, Ana Riesgo, Ewelina Rubin, Zach Russell, Klaus Rützler, Erik A. Sperling, Michael di Stefano, James E. Tarver, Allen G. Collins
Jose Lopez

Suppression Subtractive Hybridization PCR Isolation of cDNAs from a Caribbean Soft Coral, Jose V. Lopez, Angela Ledger, Lory Z. Santiago-Vázquez, Mihai Pop, Dan D. Sommer, Llanie K. Ranzer, Robert A. Feldman, Russell G. Kerr
Jose Lopez

Scleractinian Coral Recruitment to Reefs Physically Damaged by Ship Groundings, E. T. Rubin, Alison L. Moulding, Jose V. Lopez, David S. Gilliam, V. N. Kosmynin, Richard E. Dodge
Jose Lopez

Taking a Cat Map: Genome Analysis by Supercomputer, Jose V. Lopez
Jose Lopez

Population Structure and Dispersal of the Coral-Excavating Sponge Cliona delitrix, Andia Chaves Fonnegra, Kevin A. Feldheim, Jesse Secord, Jose V. Lopez
Jose Lopez

Some Preservation Techniques for (Deep Water) Coral Samples for Subsequent Molecular Studies: A Special Supplement from Harbor Branch Oceanographic Institute, Jose V. Lopez
Jose Lopez

Discrimination of Species in the Montastrea annularis Complex using Multiple Genetic Loci, Jose V. Lopez, Nancy Knowlton
Jose Lopez

Dynamics of Marine Bacterial Community Diversity of the Coastal Waters of the Reefs, Inlets, and Wastewater Outfalls of Southeast Florida, Alexandra Mandina Campbell, Jay Fleisher, Christopher D. Sinigalliano, James R. White, Jose V. Lopez
Jose Lopez

Andros Island Flora and Fauna in the New Millennium, Jose V. Lopez, Cheryl L. Peterson, Felix Morales, Luther Brown
Jose Lopez

Comparison of Bacterial Diversity within the Coral Reef Sponge, Axinella corrugata, and the Encrusting Coral Erythropodium caribaeorum, Jose V. Lopez, L. K. Ranzer, A. Ledger, B. Schoch, A. Duckworth, P. J. McCarthy, R. G. Kerr
Jose Lopez

Co-Cultures of Pseudomonas aeruginosa and Roseobacter denitrificans Reveal Shifts in Gene Expression Levels Compared to Solo Cultures, Crystal A. Conway, Nwadiuto Esiobu, Jose V. Lopez
Jose Lopez

Diverse Bacterial PKS Sequences Derived from Okadaic Acid-Producing Dinoflagellates, Roberto Perez, Li Liu, Jose V. Lopez, Tianying An, Kathleen S. Rein
Jose Lopez

Fish-T1K (Transcriptomes of 1,000 Fishes) Project: Large-Scale Transcriptome Data for Fish Evolution Studies, Ying Sun, Yu Huang, Xiaofeng Li, Carole C. Baldwin, Zhuocheng Zhou, Zhixiang Yan, Keith A. Crandall, Yong Zhang, Xiaomeng Zhao, Min Wang, Alex Wong, Chao Fang, Xinhui Zhang, Hai Huang, Jose V. Lopez, Kirk Kilfoyle, Yong Zhang, Guillermo Orti, Byrappa Venkatesh, Qiong Shi
Jose Lopez

The Many Faces of Gene Expression Profiling: Transcriptome Analyses Applied Towards Elucidating Marine Organismal Interactions and Metabolism., Jose V. Lopez, Benoit Mouzon, Peter McCarthy, Russell Kerr
Jose Lopez

Scleractinian Coral Recruitment to Reefs Physically Damaged by Ship Groundings, E. T. Rubin, Alison L. Moulding, Jose V. Lopez, David S. Gilliam, V. N. Kosmynin, Richard E. Dodge
Jose Lopez

Metabolites from the Marine-Derived Fungus Chromocleista sp. Isolated from a Deep-Water Sediment Sample Collected in the Gulf of Mexico, Young Chul Park, Sarath P. Gunasekera, Jose V. Lopez, Peter J. McCarthy, Amy E. Wright
Jose Lopez

Reconstruction of Family-Level Phylogenetic Relationships within Demospongiae (Porifera) Using Nuclear Encoded Housekeeping Genes, Malcolm S. Hill, April L. Hill, Jose V. Lopez, Kevin J. Peterson, Shirley Pomponi, Maria C. Diaz, Robert W. Thacker, Maja Adamska, Nicole Boury-Esnault, Paco Cárdenas, Andia Chaves-Fonnegra, Elizabeth Danka, Bre-Onna De Laine, Dawn Formica, Eduardo Hajdu, Gisele Lobo-Hajdu, Sarah Klontz, Christine C. Morrow, Jignasa Patel, Bernard Picton, Davide Pisani, Deborah Pohlmann, Niamh E. Redmond, John Reed, Stacy Richey, Ana Riesgo, Ewelina Rubin, Zach Russell, Klaus Rützler, Erik A. Sperling, Michael di Stefano, James E. Tarver, Allen G. Collins
Jose Lopez

Molecular Techniques Reveal Wide Phyletic Diversity of Heterotrophic Microbes Associated with Discodermia spp. (Porifera: Demospongiae), Jose V. Lopez, Peter J. McCarthy, Kathleen E. Janda, Robin Willoughby, Shirley A. Pomponi
Jose Lopez

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability, James R. White, Jignasa Patel, Andrea Ottesen, Gabriela Arce, Patricia Blackwelder, Jose V. Lopez
Jose Lopez

Diversity, Structure and Convergent Evolution of the Global Sponge Microbiome, Torsten Thomas, Lucas Moitinho-Silva, Miguel Lurgi, Johannes R. Bjork, Cole Easson, Carmen Astudillo-Garcia, Julie B. Olson, Patrick M. Erwin, Susanna Lopez-Legentil, Heidi Luter, Andia Chaves Fonnegra, Rodrigo Costa, Peter J. Schupp, Laura Steindler, Dirk Erpenbeck, Jack Gilbert, Rob Knight, Gail Ackermann, Jose V. Lopez, Michael W. Taylor, Robert W. Thacker, Jose M. Montoya, Ute Hentschel, Nicole S. Webster
Marine & Environmental Sciences Faculty Articles

Fish-T1K (Transcriptomes of 1,000 Fishes) Project: Large-Scale Transcriptome Data for Fish Evolution Studies, Ying Sun, Yu Huang, Xiaofeng Li, Carole C. Baldwin, Zhuocheng Zhou, Zhixiang Yan, Keith A. Crandall, Yong Zhang, Xiaomeng Zhao, Min Wang, Alex Wong, Chao Fang, Xinhui Zhang, Hai Huang, Jose V. Lopez, Kirk Kilfoyle, Yong Zhang, Guillermo Orti, Byrappa Venkatesh, Qiong Shi
Biology Faculty Articles

Asynchronous Reproduction and Multi-Spawning in the Coral-Excavating Sponge Cliona delitrix, Andia Chaves Fonnegra, Manuel Maldonado, Patricia Blackwelder, Jose V. Lopez
Biology Faculty Proceedings, Presentations, Speeches, Lectures

Using Probabilities of Enterococci Exceedance and Logistic Regression to Evaluate Long Term Weekly Beach Monitoring Data, Diana Ixchel Aranda, Jose V. Lopez, Helena M. Solo-Gabriele, Jay Fleisher
Marine & Environmental Sciences Faculty Articles

Understanding Deep-Pelagic Ecosystem Dynamics: A New Research Initiative in the Gulf of Mexico (DEEPEND), Tracey Sutton, K. M. Boswell, Heather D. Bracken-Grissom, April B. Cook, S. DeRada, D. English, R. Eytan, D. Fenolio, Tamara M. Frank, C. Hu, Matthew Johnston, H. Judkins, C. Lembke, Jose V. Lopez, J. A. Moore, M. Nizinski, B. Penta, I. C. Romero, J. R. Rooker, Mahmood S. Shivji, R. J. D. Wells, Michael Vecchione, M. Youngbluth
Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

An Example of Microbiology Crowdfunding: The Skin Deep MIcrobiome Project, Jose V. Lopez, Renee Potens, Jorie L. Skutas, Nidhi Vijayan, Kyle Roebuck
Biology Faculty Proceedings, Presentations, Speeches, Lectures

DEEPEND: Deep-Pelagic Nekton Dynamics of the Gulf of Mexico, Tracey Sutton, April B. Cook, Kevin M. Boswell, Heather D. Bracken-Grissom, David Wells, David English, Ron Eytan, Dante Fenolio, Tamara M. Frank, Chad Lembke, Jose V. Lopez, Jon Moore, Martha Nizinski, Isabel C. Romero, Jay R. Rooker, Mahmood S. Shivji, Michael Vecchione, Brad Penta, Marsh Youngbluth
Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

DEEPEND: Deep-Pelagic Nekton Dynamics of the Gulf of Mexico, Tracey Sutton, April B. Cook, Kevin M. Boswell, Heather D. Bracken-Grissom, David Wells, David English, Ron Eytan, Dante Fenolio, Tamara M. Frank, Chad Lembke, Jose V. Lopez, Jon Moore, Martha Nizinski, Isabel C. Romero, Jay R. Rooker, Mahmood S. Shivji, Michael Vecchione, Brad Penta, Marsh Youngbluth
Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Population Structure and Dispersal of the Coral-Excavating Sponge Cliona delitrix, Andia Chaves Fonnegra, Kevin A. Feldheim, Jesse Secord, Jose V. Lopez
Marine & Environmental Sciences Faculty Articles

Dynamics of Marine Bacterial Community Diversity of the Coastal Waters of the Reefs, Inlets, and Wastewater Outfalls of Southeast Florida, Alexandra Mandina Campbell, Jay Fleisher, Christopher D. Sinigalliano, James R. White, Jose V. Lopez
Marine & Environmental Sciences Faculty Articles

Two Distinct Microbial Communities Revealed in the Sponge Cinachyrella, Marie L. Cuvelier, Emily Blake, Rebecca Mulheron, Peter J. McCarthy, Patricia Blackwelder, Rebecca Vega-Thurber, Jose V. Lopez
Marine & Environmental Sciences Faculty Articles

The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes, GIGA Community of Scientists, Jose V. Lopez, Stephen J. O'Brien, Charles Messing, M. Christina Diaz, Nicole D. Fogarty, Matthew Johnston
Biology Faculty Articles

Patterns of Population Structure for Inshore Bottlenose Dolphins along the Eastern United States, Vincent P. Richards, Thomas W. Greig, Patricia A. Fair, Stephen D. McCullouch, Christine Politz, Ada Natoli, Carlos A. Driscoll, A. Rus Hoelzel, Victor David, Gregory D. Bossart, Jose V. Lopez
Biology Faculty Articles

Genetic and Phylogenetic Evidence for Horizontal Gene Transfer Among Ecologically Disparate Groups of Marine Vibrio, Maria Hoffman, Steven R. Monday, Peter J. McCarthy, Jose V. Lopez, Markus Fischer, Eric W. Brown
Biology Faculty Articles

Reconstruction of Family-Level Phylogenetic Relationships within Demospongiae (Porifera) Using Nuclear Encoded Housekeeping Genes, Malcolm S. Hill, April L. Hill, Jose V. Lopez, Kevin J. Peterson, Shirley Pomponi, Maria C. Diaz, Robert W. Thacker, Maja Adamska, Nicole Boury-Esnault, Paco Cárdenas, Andia Chaves-Fonnegra, Elizabeth Danka, Bre-Onna De Laine, Dawn Formica, Eduardo Hajdu, Gisele Lobo-Hajdu, Sarah Klontz, Christine C. Morrow, Jignasa Patel, Bernard Picton, Davide Pisani, Deborah Pohlmann, Niamh E. Redmond, John Reed, Stacy Richey, Ana Riesgo, Ewelina Rubin, Zach Russell, Klaus Rützler, Erik A. Sperling, Michael di Stefano, James E. Tarver, Allen G. Collins
Marine & Environmental Sciences Faculty Articles

Vibrio caribbeanicus sp. nov., Isolated from the Marine Sponge Scleritoderma cyanea, Maria Hoffman, Steven R. Monday, Marc W. Allard, Errol A. Strain, Paul Whittaker, Marianna Naum, Peter J. McCarthy, Jose V. Lopez, Markus Fischer, Eric W. Brown
Biology Faculty Articles

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability, James R. White, Jignasa Patel, Andrea Ottesen, Gabriela Arce, Patricia Blackwelder, Jose V. Lopez
Marine & Environmental Sciences Faculty Articles

Co-Cultures of Pseudomonas aeruginosa and Roseobacter denitrificans Reveal Shifts in Gene Expression Levels Compared to Solo Cultures, Crystal A. Conway, Nwadiuto Esiobu, Jose V. Lopez
Marine & Environmental Sciences Faculty Articles

Suppression Subtractive Hybridization PCR Isolation of cDNAs from a Caribbean Soft Coral, Jose V. Lopez, Angela Ledger, Lory Z. Santiago-Vázquez, Mihai Pop, Dan D. Sommer, Llanie K. Ranzer, Robert A. Feldman, Russell G. Kerr
Marine & Environmental Sciences Faculty Articles

Population Dynamics of Vibrio spp. Associated with Marine Sponge Microcosms, Maria Hoffman, Markus Fischer, Andrea Ottesen, Peter J. McCarthy, Jose V. Lopez, Eric W. Brown, Steven R. Monday
Biology Faculty Articles

Florida Reef Sponges Harbor Coral Disease-Associated Microbes, Karita Negandhi, Patricia Blackwelder, Alexander V. Ereskovsky, Jose V. Lopez
Marine & Environmental Sciences Faculty Articles

The Many Faces of Gene Expression Profiling: Transcriptome Analyses Applied Towards Elucidating Marine Organismal Interactions and Metabolism., Jose V. Lopez, Benoit Mouzon, Peter McCarthy, Russell Kerr
Marine & Environmental Sciences Faculty Books and Book Chapters

A New Prokaryotic Farnesyldiphosphate Synthase from the Octocoral Eunicea fusca: Differential Display, Inverse PCR, Cloning, and Characterization, Llanie K. Ranzer, Thomas B. Bruck, Wolfram M. Brück, Jose V. Lopez, Russell G. Kerr
Biology Faculty Articles

Scleractinian Coral Recruitment to Reefs Physically Damaged by Ship Groundings, E. T. Rubin, Alison L. Moulding, Jose V. Lopez, David S. Gilliam, V. N. Kosmynin, Richard E. Dodge
Marine & Environmental Sciences Faculty Articles

Comparison of Bacterial Diversity within the Coral Reef Sponge, Axinella corrugata, and the Encrusting Coral Erythropodium caribaeorum, Jose V. Lopez, L. K. Ranzer, A. Ledger, B. Schoch, A. Duckworth, P. J. McCarthy, R. G. Kerr
Marine & Environmental Sciences Faculty Articles

Use of Real-Time qPCR to Quantify Members of the Unculturable Heterotrophic Bacterial Community in a Deep Sea Marine Sponge, Vetulina sp., M. Cassler, C. L. Peterson, A. Ledger, Shirley A. Pomponi, A. E. Wright, R. Winegar, P. J. McCarthy, Jose V. Lopez
Biology Faculty Articles

Diverse Bacterial PKS Sequences Derived from Okadaic Acid-Producing Dinoflagellates, Roberto Perez, Li Liu, Jose V. Lopez, Tianying An, Kathleen S. Rein
Marine & Environmental Sciences Faculty Articles

Some Preservation Techniques for (Deep Water) Coral Samples for Subsequent Molecular Studies: A Special Supplement from Harbor Branch Oceanographic Institute, Jose V. Lopez
Marine & Environmental Sciences Faculty Reports

Metabolites from the Marine-Derived Fungus Chromocleista sp. Isolated from a Deep-Water Sediment Sample Collected in the Gulf of Mexico, Young Chul Park, Sarath P. Gunasekera, Jose V. Lopez, Peter J. McCarthy, Amy E. Wright
Marine & Environmental Sciences Faculty Articles

Localization of Polyketide Synthase Encoding Genes to the Toxic Dinoflagellate Karenia brevis, Richard V. Snyder, Maria A. Guerrero, Christopher D. Sinigalliano, Jamie Winshell, Roberto Perez, Jose V. Lopez, Kathleen S. Rein
Biology Faculty Articles

A Molecular Systematic Survey of Cultured Microbial Associates of Deep-Water Marine Invertebrates, Karen S. Sfanos, Dedra K. Harmody, Phat Dang, Angela Ledger, Shirley A. Pomponi, Peter McCarthy, Jose V. Lopez
Biology Faculty Articles

HBMMD: An Enhanced Database of the Microorganisms Associated with Deeper Water Marine Invertebrates, Aravinda S. Gunasekera, Karen S. Sfanos, Dedra K. Harmody, Shirley A. Pomponi, Peter J. McCarthy, Jose V. Lopez
Biology Faculty Articles

The Perfect Microbial Symbiosis Hotel: Marine Sponges, Jose V. Lopez
Marine & Environmental Sciences Faculty Articles

Naturally Mosaic Operons for Secondary Metabolite Biosynthesis: Variability and Putative Horizontal Transfer of Discrete Catalytic Domains of the Epothilone Polyketide Synthase Locus, Jose V. Lopez
Biology Faculty Articles

Genetic Variation of the Scleractinian Coral Stylophora pistillata, from Western Pacific Reefs, M. Takabayashi, D. Carter, Jose V. Lopez, O. Hoegh-Guldberg
Biology Faculty Articles

Polyketide Synthase Genes from Marine Dinoflagellates, R. V. Snyder, P. D. L. Gibbs, A. Palacios, L. Abiy, R. Dickey, Jose V. Lopez, K. S. Rein
Biology Faculty Articles

Characterization of Genetic Markers for In Vitro Cell Line Identification of the Marine Sponge Axinella corrugata, Jose V. Lopez, C. L. Peterson, Robin Willoughby, A. E. Wright, E. Enright, S. Zoladz, John K. Reed, Shirley A. Pomponi
Biology Faculty Articles

Andros Island Flora and Fauna in the New Millennium, Jose V. Lopez, Cheryl L. Peterson, Felix Morales, Luther Brown
Marine & Environmental Sciences Faculty Articles

Molecular Techniques Reveal Wide Phyletic Diversity of Heterotrophic Microbes Associated with Discodermia spp. (Porifera: Demospongiae), Jose V. Lopez, Peter J. McCarthy, Kathleen E. Janda, Robin Willoughby, Shirley A. Pomponi
Marine & Environmental Sciences Faculty Articles

Molecular Determination of Species Boundaries in Corals: Genetic Analysis of the Montastraea annularis Complex Using Amplified Fragment Length Polymorphisms and a Microsatellite Marker, Jose V. Lopez, Ralf Kersanach, Stephen A. Rehner, Nancy Knowlton
Biology Faculty Articles

In Vitro Production of Marine-Derived Compounds, Shirley A. Pomponi, Robin Willoughby, Amy E. Wright, Claudia Pecorella, Susan H. Sennett, Jose V. Lopez, Gail Samples
Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The Long and Short of Nuclear Mitochondrial DNA (Numt) Lineages, Jose V. Lopez, J. Claiborne Stephens, Stephen J. O'Brien
Biology Faculty Articles

Rates of Nuclear and Cytoplasmic Mitochondrial DNA Sequence Divergence in Mammals, Jose V. Lopez, Melanie Culver, J. Claiborne Stephens, Warren E. Johnson, Stephen James O'Brien
Biology Faculty Articles

Discrimination of Species in the Montastrea annularis Complex using Multiple Genetic Loci, Jose V. Lopez, Nancy Knowlton
Marine & Environmental Sciences Faculty Articles

Molecular Phylogeny of Mitochondrial Cytochrome b and 12S rRNA Sequences in the Felidae: Ocelot and Domestic Cat Lineages, Ryuichi Masuda, Jose V. Lopez, Jill Pecon Slattery, Naoya Yuhki, Stephen James O'Brien
Biology Faculty Articles

Complete Nucleotide Sequences of the Domestic Cat (Felis catus) Mitochondrial Genome and a Transposed mtDNA Tandem Repeat (Numt) in the Nuclear Genome, Jose V. Lopez, Stanley Cevario, Stephen J. O'Brien
Biology Faculty Articles

Rapid Evolution of a Heteroplasmic Repetitive Sequence in the Mitochondrial DNA Control Region of Carnivores, A Rus Hoelzel, Jose V. Lopez, Gabriel A. Dover, Stephen James O'Brien
Biology Faculty Articles

Numt, a Recent Transfer and Tandem Amplification of Mitochondrial DNA in the Nuclear Genome of the Domestic Cat, Jose V. Lopez, Naoya Yuhki, Ryuichi Masuda, William Modi, Stephen James O'Brien
Biology Faculty Articles

Taking a Cat Map: Genome Analysis by Supercomputer, Jose V. Lopez
Marine & Environmental Sciences Faculty Articles

HSV-2-induced Tumorigenicity in HPV 16-immortalized Human Genital Keratinocytes, Joseph A. Dipaolo, Craig D. Woodworth, Nicholas C. Popescu, Debra L. Koval, Jose V. Lopez, Jay Doniger
Biology Faculty Articles