Part of the Biochemistry, Biophysics, and Structural Biology Commons

Works in Biochemistry, Biophysics, and Structural Biology

2023

Constructing a 3-D Molecular Model to Highlight the Conversion of the Normal Protein PrPC into the Mutated PrPSC in a Prion Disease, Emily F. Schmitt Lavin, Allan Barraza, Hoang (Gwen) Bui, Robert Charles Speth
Robert Speth

Analysis of Attitudinal Student Learning Benefits from a Course-based Undergraduate Research Experience (CURE) Adapted for Online Format, Ambika Kapil, Luis C. Gonzalez Isoba, Niraj Pathak, Arthur Sikora, Santanu De
FDLA Journal

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Analysis of Attitudinal Student Learning Benefits from a Course-based Undergraduate Research Experience (CURE) Adapted for Online Format, Ambika Kapil, Luis C. Gonzalez Isoba, Niraj Pathak, Arthur Sikora, Santanu De
Santanu De

Seq’ and ARMS shall find: DNA (meta)barcoding of Autonomous Reef Monitoring Structures across the tree of life uncovers hidden cryptobiome of tropical urban coral reefs, Yin Cheong Aden Ip, Jia Jin Marc Chang, Ren Min Oh, Zheng Bin Randolph Quek, Yong Kit Samuel Chan, Andrew G. Bauman, Danwei Huang
Andrew Bauman

Change and stasis of distinct sediment microbiomes across Port Everglades Inlet (PEI) and the adjacent coral reefs, Lauren E. Krausfeldt, Jose V. Lopez, Catherine Bilodeau, Hyo Won Lee, Shelby L. Casali
Biology Faculty Articles

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Change and stasis of distinct sediment microbiomes across Port Everglades Inlet (PEI) and the adjacent coral reefs, Lauren E. Krausfeldt, Jose V. Lopez, Catherine Bilodeau, Hyo Won Lee, Shelby L. Casali
Jose Lopez

2022

Caribbean Reef-Building Coral-Symbiodiniaceae Network: Identifying Symbioses Critical for System Stability in a Changing Climate, Shaman Patel
All HCAS Student Capstones, Theses, and Dissertations

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Seq’ and ARMS shall find: DNA (meta)barcoding of Autonomous Reef Monitoring Structures across the tree of life uncovers hidden cryptobiome of tropical urban coral reefs, Yin Cheong Aden Ip, Jia Jin Marc Chang, Ren Min Oh, Zheng Bin Randolph Quek, Yong Kit Samuel Chan, Andrew G. Bauman, Danwei Huang
Marine & Environmental Sciences Faculty Articles

Analysis of MDM2 Regulation on AURKB Expression in Small Cell Lung Cancer, Alexandra Carbone, Karen Kameo
NSU REACH and IPE Day

2021

A Temporal Analysis of the Microbiota and Biofouling Development on Artificial Substrates in the Port Everglades Inlet, Florida, Denise Swack
All HCAS Student Capstones, Theses, and Dissertations

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Analysis of Student Learning Gains in a Biochemistry CURE course during the mandatory COVID-19 shift to online learning, Ambika Kapil, Santanu De, Arthur Sikora
Arthur Sikora

Analysis of Student Learning Gains in a Biochemistry CURE course during the mandatory COVID-19 shift to online learning, Ambika Kapil, Santanu De, Arthur Sikora
Biology Faculty Proceedings, Presentations, Speeches, Lectures

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Analysis of Student Learning Gains in a Biochemistry CURE course during the mandatory COVID-19 shift to online learning, Ambika Kapil, Santanu De, Arthur Sikora
Santanu De

2020

Spliceosomal Proteins as Targets for Melanoma Therapy, Dmitriy Minond
HCA-NSU MD Research Day

Methionine Deprivation Induced Changes in Genome Methylation of mTORC Nutrient Sensing Genes, Orlando Telleria, Miguel Belaunzaran, Kallidaikurichi V. Venkatachalam
HCA-NSU MD Research Day

COVID-19 Pathogen (SARS-Cov-2) Viral Evolution Leading to Increased Infectivity, Sonam Parag
HCA-NSU MD Research Day

Antagonistic Roles of GRK2 and GRK5 in Cardiac Aldosterone Signaling Reveal GRK5-Mediated Cardioprotection via Mineralocorticoid Receptor Inhibition, Jennifer Maning, Katie Anne McCrink, Celina M. Pollard, Victoria Desimine, Jennifer Ghandour, Arianna Perez, Natalie Cora, Krysten E. Ferraino, Barbara Parker, Ava Brill, Beatrix Aukszi, Anastasios Lymperopoulos
Beatrix Aukszi

In Situ Observation of Conformational Dynamics and Protein Ligand–Substrate Interactions in Outer-Membrane Proteins With DEER/PELDOR Spectroscopy, Benesh Joseph, Eva A. Jaumann, Arthur Sikora, Katja Barth, Thomas F. Prisner, David Cafiso
Arthur Sikora

Flexible Implementation of the BASIL CURE, Rebecca Roberts, Bonnie Hall, Colette Daubner, Anya Goodman, Michael Pikaart, Arthur Sikora, Paul Craig
Arthur Sikora

Antagonistic Roles of GRK2 and GRK5 in Cardiac Aldosterone Signaling Reveal GRK5-Mediated Cardioprotection via Mineralocorticoid Receptor Inhibition, Jennifer Maning, Katie Anne McCrink, Celina M. Pollard, Victoria Desimine, Jennifer Ghandour, Arianna Perez, Natalie Cora, Krysten E. Ferraino, Barbara Parker, Ava Brill, Beatrix Aukszi, Anastasios Lymperopoulos
Chemistry and Physics Faculty Articles

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Optimization of Nanoparticle Gene Therapy for Stem Cells using Cell Penetrating Peptides, Kate J. Carnevale
Health Professions Division REACH Day

2019

Developing 3-D Molecular Models to Highlight the Angiotensin II Type 1 Receptor and Olmesartan Binding for Medical and Educational Applications, Emily Schmitt Lavin, Guy Merus, Valentina Ramirez, Riti Vohra
Emily F Schmitt Lavin

Constructing a 3-D Molecular Model to Highlight the Conversion of the Normal Protein PrPC into the Mutated PrPSC in a Prion Disease, Emily F. Schmitt Lavin, Allan Barraza, Hoang (Gwen) Bui, Robert Charles Speth
Emily F Schmitt Lavin

Developing a Physical Model of O-GlcNAc Transferase (OGT) in Complex with TAB1, Viviana Perez Hernandez, Sophia Nguyen, Alesa Chabbra, Emily Schmitt Lavin
Emily F Schmitt Lavin

Linking Protein Structure and Function to Medical Applications Through 3-D Molecular Modeling, Riti Vohra, Valentina Ramirez, Guy Merus, Emily Schmitt Lavin
Emily F Schmitt Lavin

Treating Epilepsy with Physics, Louis R. Nemzer
Louis R Nemzer

Treating Epilepsy with Physics, Louis R. Nemzer
Chemistry and Physics Faculty Articles

In Situ Observation of Conformational Dynamics and Protein Ligand–Substrate Interactions in Outer-Membrane Proteins With DEER/PELDOR Spectroscopy, Benesh Joseph, Eva A. Jaumann, Arthur Sikora, Katja Barth, Thomas F. Prisner, David Cafiso
Chemistry and Physics Faculty Articles

Flexible Implementation of the BASIL CURE, Rebecca Roberts, Bonnie Hall, Colette Daubner, Anya Goodman, Michael Pikaart, Arthur Sikora, Paul Craig
Chemistry and Physics Faculty Articles

2018

Microbial Ecology of South Florida Surface Waters: Examining the Potential for Anthropogenic Influences, Chase P. Donnelly
HCNSO Student Theses and Dissertations

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Starch, Lipid, and Protein Accumulation in Nutrient-Stressed Microalgal Cells Studied Using Fourier Transform Infrared Microscopy, Gary Hastings, Jodian Thomas, Keillor Witt, Dimitri Giarikos, Reza Razeghifard
Reza Razeghifard

Starch, Lipid, and Protein Accumulation in Nutrient-Stressed Microalgal Cells Studied Using Fourier Transform Infrared Microscopy, Gary Hastings, Jodian Thomas, Keillor Witt, Dimitri Giarikos, Reza Razeghifard
Dimitri Giarikos

Constructing a 3-D Molecular Model to Highlight the Conversion of the Normal Protein PrPC into the Mutated PrPSC in a Prion Disease, Emily F. Schmitt Lavin, Allan Barraza, Hoang (Gwen) Bui, Robert Charles Speth
Biology Faculty Proceedings, Presentations, Speeches, Lectures

Developing a Physical Model of O-GlcNAc Transferase (OGT) in Complex with TAB1, Viviana Perez Hernandez, Sophia Nguyen, Alesa Chabbra, Emily Schmitt Lavin
Biology Faculty Proceedings, Presentations, Speeches, Lectures

Starch, Lipid, and Protein Accumulation in Nutrient-Stressed Microalgal Cells Studied Using Fourier Transform Infrared Microscopy, Gary Hastings, Jodian Thomas, Keillor Witt, Dimitri Giarikos, Reza Razeghifard
Chemistry and Physics Faculty Articles

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2017

Nuclear Genome Size Diversity Of Marine Invertebrate Taxa Using Flow Cytometric Analysis, Kyle Roebuck
HCNSO Student Theses and Dissertations

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Shift to Authentic Lab Experiments in Student Biochemistry Lab, Arthur Sikora
Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

Expanding Magnetic Resonance Techniques into Live Whole Cells for Membrane Protein Studies, Arthur Sikora, Benesh Joseph, Morgan Matson, Jacob Staley, David Cafiso
Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

Frozen Brain Atlas, Natalie Andrea Builes, Dominick Joseph Casciato, Samantha Taylor Bergoine, Robert Speth
Robert Speth

Developing 3-D Molecular Models to Highlight the Angiotensin II Type 1 Receptor and Olmesartan Binding for Medical and Educational Applications, Emily Schmitt Lavin, Guy Merus, Valentina Ramirez, Riti Vohra
Biology Faculty Proceedings, Presentations, Speeches, Lectures

Imprisoned Lightning: Charge Transport in Trehalose-Derived Sugar Glasses, Louis R. Nemzer, Mahantesh S. Navati, Joel M. Friedman
Louis R Nemzer

Pulsed EPR Studies of Biodirectional Allosteric Signaling in the TonB Dependent Transporter, BtuB, Arthur Sikora, Benesh Joseph, Morgan Matson, Jacob R. Staley, David Cafiso
Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

Using PyMOL to Explore the Effects of pH on Non-Covalent Interactions between Immunoglobulin G and Protein A: A Guided-Inquiry Biochemistry Activity, Zahilyn Roche, Heeyoung Tai, Stacey Lowery Bretz, Richard Page
Zahilyn Roche

Shannon information entropy in the canonical genetic code, Louis R. Nemzer
Louis R Nemzer

2016

Allosteric Signaling Is Bidirectional in an Outer-Membrane Transport Protein, Arthur Sikora, Benesh Joseph, Morgan Matson, Jacob R. Staley, David S. Casifo
Chemistry and Physics Faculty Articles

Lysine-Specific Histone Demethylase 1 Inhibitors Control Breast Cancer Proliferation in ERα-Dependent and -Independent Manners, Julie A. Pollock, Michelle D. Larrea, Jeff S. Jasper, Donald P. McDonnell, Dewey G. McCafferty
Michelle Larrea

RSK1 Drives p27Kip1 Phosphorylation at T198 to Promote RhoA Inhibition and Increase Cell Motility, Michelle D. Larrea, Feng Hong, Seth A. Wander, Thiago G. da Silva, David Helfman, Deborah Lannigan, Jeffrey A. Smith, Joyce M. Slingerland
Michelle Larrea

The Energy Sensing LKB1-AMPK Pathway Regulates p27kip1 Phosphorylation Mediating the Decision to Enter Autophagy or Apoptosis, Jiyong Liang, Shan H. Shao, Zhi-Xiang Xu, Bryan Hennessy, Zhiyong Ding, Michelle D. Larrea
Michelle Larrea

p27 as Jekyll and Hyde: Regulation of Cell Cycle and Cell Motility, Michelle D. Larrea, Seth A. Wander, Joyce M. Slingerland
Michelle Larrea

mTOR-Raptor Binds and Activates SGK1 to Regulate p27 Phosphorylation, Feng Hong, Michelle D. Larrea, Cheryl Doughty, David J. Kwiatkowski, Rachel Squillace, Joyce M. Slingerland
Michelle Larrea

Algal Biofuels, Reza Razeghifard
Reza Razeghifard

Photochemistry of Free and Bound Zn-Chlorophyll Analogues to Synthetic Peptides Depend on the Quinone and pH, Reza Razeghifard
Reza Razeghifard

A P450 Metabolism Experiment for Undergraduate Biochemistry Laboratories, Reza Razeghifard, Catherine Chiafair, Dimitri Giarikos
Reza Razeghifard

Linking Protein Structure and Function to Medical Applications Through 3-D Molecular Modeling, Riti Vohra, Valentina Ramirez, Guy Merus, Emily Schmitt Lavin
Biology Faculty Proceedings, Presentations, Speeches, Lectures

A P450 Metabolism Experiment for Undergraduate Biochemistry Laboratories, Reza Razeghifard, Catherine Chiafair, Dimitri Giarikos
Dimitri Giarikos

TonB Binding Produces Allosteric Changes in the Outer Loops and Substrate Binding Site of the TBDT BtuB, Arthur Sikora, David Cafiso
Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

Ligand Induced Conformational Changes of a Membrane Transporter in E. coli Cells Observed with DEER/PELDOR, Benesh Joseph, Arthur Sikora, David S. Cafiso
Chemistry and Physics Faculty Articles

PELDOR/DEER Spectroscopy on a Bacterial Membrane Transporter in Native Cellular Environments, Benesh Joseph, Arthur Sikora, David Cafiso, Thomas Prinser
Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

2015

Photochemistry of Free and Bound Zn-Chlorophyll Analogues to Synthetic Peptides Depend on the Quinone and pH, Reza Razeghifard
Chemistry and Physics Faculty Articles

DEER in Native Systems: What Lipids and Detergents Can't Tell Us, Arthur Sikora, Benesh Joseph, Enrica Bordignon, Thomas F. Prisner, David Cafiso
Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

Imprisoned Lightning: Charge Transport in Trehalose-Derived Sugar Glasses, Louis R. Nemzer, Mahantesh S. Navati, Joel M. Friedman
Chemistry and Physics Faculty Articles

Using Pulsed EPR to Explore Loop Dynamics of the TonB-Dependent Transporter ButB in Native Membranes, Arthur Sikora, Benesh Joseph, Enrica Bordigton, Thomas F. Prisner, David Cafiso
Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

Distance Measurement on an Endogenous Membrane Transporter in E. coli Cells and Native Membranes Using EPR Spectroscopy, Benesh Joseph, Arthur Sikora, Enrica Bordignon, Gunnar Jeschke, David S. Cafiso, Thomas F. Prisner
Chemistry and Physics Faculty Articles

Imprisoned lightning: charge transport in trehalose-derived sugar glasses, Louis R. Nemzer, Mahantesh S. Navati, Joel M. Friedman
Louis R Nemzer

Using CW-EPR to Explore Substrate Binding and the Mechanism of TonB-Dependent Transport in BtuB, Arthur Sikora, Benesh Joseph, Thomas F. Prisner, David Cafiso
Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

Chapter 12: Engineering Cell-to-Cell Communication to Explore Fundamental Questions in Ecology and Evolution, Robert P. Smith, Lauren Boudreau, Lingchong You
Biology Faculty Books and Book Chapters

Conformational dynamics of metallo-β-lactamase CcrA during catalysis investigated by using DEER spectroscopy, Mahesh Aitha, Lindsay Moritz, Indra D. Sahu, Omar Sanyurah, Zahilyn Roche, Robert McCarrick, Gary A. Lorigan, Brian Bennet, Michael W. Crowder
Zahilyn Roche

2014

Exploring the Mechanisms of Outer Membrane Transport Through Reversible Stepwise Denaturation, Arthur Sikora, David Cafiso
Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

Each Human Being Is a Biochemically Unique Individual, Edward O. Keith
CAHSS Intellectual Conversations

Exploring the Mechanisms of Outer Membrane Transport through CW-EPR and High Resolution NMR, Arthur Sikora
Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

Enzyme Entrapment in Polyaniline Films Observed via Florescence Anisotropy and Antiquenching, Louis R. Nemzer, Marissa McCaffrey, Arthur J. Epstein
Louis R Nemzer

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A P450 Metabolism Experiment for Undergraduate Biochemistry Laboratories, Reza Razeghifard, Catherine Chiafair, Dimitri Giarikos
Chemistry and Physics Faculty Articles

2013

Algal Biofuels, Reza Razeghifard
Chemistry and Physics Faculty Articles

Shared Mycobacterium avium Genotypes Observed among Unlinked Clinical and Environmental Isolates, M. Ashworth Dirac, Kris M. Weigel, MItchell A. Yakrus, Annie L. Becker, Hui-Ling Chen, Gina Fridley, Arthur Sikora, Cate Speake, Elizabeth D. Hilborn, Stacy Pfaller, Gerard A. Cangelosi
Chemistry and Physics Faculty Articles

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Novel Pluripotent Adult Stem Cell Source for Neurogenesis, Veronica R. Fortino, Devon Pawley, Daniel Pelaez, Herman S. Cheung
Biology Faculty Proceedings, Presentations, Speeches, Lectures

Monomeric TonB and the Ton Box Are Required for the Formation of a High-Affinity Transporter–TonB Complex, Daniel M. Freed, Stephen M. Lukasik, Arthur Sikora, Audrey Mokdad
Chemistry and Physics Faculty Articles

Fabrication of Core-Shell Nanoparticles via Controlled Aggregation of Semiflexible Conjugated Polymer and Hyaluronic Acid, Megan Twomey, Yoonmi Na, Zahilyn Roche, Eladio A. Mendez, Namuna Panday, Jin He, Joong Ho Moon
Zahilyn Roche

Ethanol Shock and Lysozyme Aggregation, Louis R. Nemzer, Bret N. Flander, Jeremy D. Schmit, Amitabha Chakrabarti, Christopher M. Sorensen
Louis R Nemzer

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2012

US PATENT #8,326,389 - A System for in vivo Biosensing Based on the Optical Response, Arthur Epstein, Louis R. Nemzer
Louis R Nemzer

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Effect of EGF-Receptor Tyrosine Kinase Inhibitor on Rab5 Function During Endocytosis, Ivan Jozic, Samar C. Saliba, M. Alejandro Barbieri
Biology Faculty Articles

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Hepatocyte growth factor (HGF) and 1,25-dihydroxyvitamin D together stimulate human bone marrow-derived stem cells toward the osteogenic phenotype by HGF-induced up-regulation of VDR, Ketian Chen, Kristina Aenlle, Kevin M. Curtis, Bernard A. Roos, Guy A. Howard
Chemistry and Physics Faculty Articles

Lysine-Specific Histone Demethylase 1 Inhibitors Control Breast Cancer Proliferation in ERα-Dependent and -Independent Manners, Julie A. Pollock, Michelle D. Larrea, Jeff S. Jasper, Donald P. McDonnell, Dewey G. McCafferty
Chemistry and Physics Faculty Articles

24,25-Dihydroxyvitamin D Promotes the Osteogenic Maturation of Human Mesenchymal Stem Cells through the Regulation of p63., Kevin M. Curtis, Kristina Aenlle, Ketian Chen, Bernard A. Roos, Guy A. Howard
Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

Human mesenchymal stem cells for repair of the aging skeleton: regulation by isoforms of p63 and p38, Guy A. Howard, Kevin M. Curtis, Kristina Aenlle, Ketian Chen, Bernard A. Roos
Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

2011

Human bone marrow-derived stem cell proliferation is inhibited by hepatocyte growth factor via increasing the cell cycle inhibitors p53, p21 and p27, Ketian Chen, Carlos Perez-Stable, Gianluca D'Ippolito, Paul C. Schiller, Bernard A. Roos, Guy A. Howard
Chemistry and Physics Faculty Articles

Inhibition of Rab5 Activation During Insulin Receptor-Mediated Endocytosis, Ivan Jozic, Gustavo Blanco, M. Alejandro Barbieri
Biology Faculty Articles

Exciton Broadening in Polyaniline Chains during Ion Induced Hydrophobic Collapse and Aggregation, Louis R. Nemzer, Arthur Epstein
Louis R Nemzer

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2010

Ph.D. DISSERTATION - Oxidoreductase Immobilization in Reprecipitated Polyaniline Nanostructures for Optical Biosensing Applications, Louis R. Nemzer
Louis R Nemzer

A Polyaniline-Based Optical Biosensing Platform Using an Entrapped Oxidoreductase Enzyme, Louis R. Nemzer, Arthur Epstein
Louis R Nemzer

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Enzyme Entrapment in Reprecipitated Polyaniline Nano- and Microparticles, Louis R. Nemzer, Austin Schwartz, Arthur Epstein
Louis R Nemzer

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2009

p27 as Jekyll and Hyde: Regulation of Cell Cycle and Cell Motility, Michelle D. Larrea, Seth A. Wander, Joyce M. Slingerland
Chemistry and Physics Faculty Articles

RSK1 Drives p27Kip1 Phosphorylation at T198 to Promote RhoA Inhibition and Increase Cell Motility, Michelle D. Larrea, Feng Hong, Seth A. Wander, Thiago G. da Silva, David Helfman, Deborah Lannigan, Jeffrey A. Smith, Joyce M. Slingerland
Chemistry and Physics Faculty Articles

2008

Phosphorylation of p27Kip1 Regulates Assembly and Activation of Cyclin D1-Cdk4, Michelle D. Larrea, Jiyong Liang, Thiago G. da Silva, Feng Hong, Shan H. Shao, Kathy Han, D. Dumont, Joyce M. Slingerland
Chemistry and Physics Faculty Articles

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mTOR-Raptor Binds and Activates SGK1 to Regulate p27 Phosphorylation, Feng Hong, Michelle D. Larrea, Cheryl Doughty, David J. Kwiatkowski, Rachel Squillace, Joyce M. Slingerland
Chemistry and Physics Faculty Articles

2007

Regulation of Cell Diameter, For3p Localization, and Cell Symmetry by Fission Yeast Rho-GAP Rga4p, Maitreyi Das, David J. Wiley, Saskia Medina, Helen A. Vincent, Michelle D. Larrea, Andrea Oriolo, Fulvia Verde
Chemistry and Physics Faculty Articles

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The Energy Sensing LKB1-AMPK Pathway Regulates p27kip1 Phosphorylation Mediating the Decision to Enter Autophagy or Apoptosis, Jiyong Liang, Shan H. Shao, Zhi-Xiang Xu, Bryan Hennessy, Zhiyong Ding, Michelle D. Larrea
Chemistry and Physics Faculty Articles

2005

Petromyzonol sulfate and its derivatives: the chemoattractants of the sea lamprey., K V Venkatachalam
Faculty Articles

1985

Biochemical Genetic Variation in Eight Endangered or Threatened Felid Species, A. Newman, Mitchell Bush, David E. Wildt, Dick Van Dam, Maarten Th. Frankenhuis, Lee Simmons, Lyndsay Phillips, Stephen J. O'Brien
Biology Faculty Articles

1973

Comparative Analysis of Malate Dehydrogenases of Drosophila melanogaster, Stephen J. O'Brien
Biology Faculty Articles

1972

The α-Glycerophosphate Cycle in Drosophila melanogaster. I. Biochemical and Developmental Aspects, Stephen J. O'Brien, Ross J. MacIntyre
Biology Faculty Articles

1971

A Biochemical Genetic Map of D. melanogaster, Stephen J. O'Brien, Ross J. MacIntyre
Biology Faculty Articles