Biology Faculty Articles

Biology Faculty Articles

 

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Submissions from 2022

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Impacts of COVID-19 on Global Healthcare Management and Research, Stephanie Autore and Santanu De

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Why sequence all eukaryotes?, Mark Blaxter, John M. Archibald, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Federica Di Palma, Richard Durbin, Scott V. Edwards, Jennifer A.M. Graves, Kevin J. Hackett, Neil Hall, Erich D. Jarvis, Rebecca N. Johnson, Elinor K. Karlsson, W. John Kress, Shigehiro Kuraku, Mara K. N. Lawniczak, Kerstin Lindblad-Toh, Jose V. Lopez, Nancy A. Moran, Gene E. Robinson, Oliver A. Ryder, Beth Shapiro, Pamela S. Soltis, Tandy Warnow, Guojie Zhang, and Harris A. Lewin

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Understanding the microbial biogeography of ancient human dentitions to guide study design and interpretation, Zandra Fagernäs, Domingo C. Salazar-Garcia, Maria Hadar Uriarte, Azucena Avilés Fernández, Amanda G. Henry, Joaquín Lomba Maurandi, Andrew T. Ozga, Irina M. Velsko, and Christina Warinner

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Creating an Interdisciplinary Curriculum within the Undergraduate Arts and Sciences through Agar Art, Julie Torruellas Garcia, Kandy Lopez, Véronique Côté, and Katie E. Crump

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Rapid Pivot of CURE Wet Lab to Online with the Help of Instructor Communities, Enid T. González-Orta, Deborah Tobiason, Brittany J. Gasper, Aarti Raja, and Sarah Miller

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Global Education in STEM and Healthcare: Implications of COVID-19, Jessica Hallet and Santanu De

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Worldwide Consequences of COVID-19 on Research in STEM, Michelle Hoang and Santanu De

Analysis of Attitudinal Student Learning Benefits from a Biochemistry CURE Adapted for the Online Format, Amika Kapil, Luis Gonzalez, Niraj Pathak, Santanu De, and Arthur Sikora

Quantification of Learning Gains in a Science CURE: Leveraging Learning Objectives to Substantiate and Validate the Benefits of Experiential Education, Rachel Keating, Luzcarime Saco Vertiz, Victor Manly, Akshata Sastry, Santanu De, and Arthur Sikora

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Associations between Toxoplasma gondii infection and steroid hormone levels in spotted hyenas, Zachary M. Laubach, Eben Gering, Erik Yang, Tracy M. Montgomery, Thomas Getty, and Kay E. Holekamp

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Standards recommendations for the Earth BioGenome Project, Mara K. Lawniczak, Richard Durbin, Paul Flicek, Kerstin Lindblad-Toh, Xiaofeng Wei, John M. Archibald, William J. Baker, Katherine Belov, Mark L. Blaxter, Tomas Marques-Bonet, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Andrew J. Crawford, Robert P. Davey, Federica Di Palma, Qi Fang, Wilfried Haerty, Neil Hall, Katherine J. Hoff, Kerstin Howe, Erich D. Jarvis, Warren E. Johnson, Rebecca N. Johnson, Paul J. Kersey, Xin Liu, Jose V. Lopez, Eugene W. Myers, Olga Vinnere Pettersson, Adam M. Phillippy, Monica F. Poelchau, Kim D. Pruitt, Arang Rhie, Juan Carlos Castilla-Rubio, Sunil Kumar Sahu, Nicholas A. Salmon, Pamela S. Soltis, David Swarbreck, Françoise Thibaud-Nissen, Sibo Wang, Jill L. Wegrzyn, Guojie Zhang, He Zhang, Harris A. Lewin, and Stephen Richards

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The Earth BioGenome Project 2020: Starting the clock, Harris A. Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L. Allende, John M. Archibald, Katharine B. Baker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark L. Blaxter, Jing Cai, Nicolette D. Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu-Miaw Chaw, Lei Chen, Anna K. Childers, Jonathan A. Coddington, Dalia A. Conde, Montserrat Corominas, Keith A. Crandall, Andrew J. Crawford, Federica DiPalma, Richard Durbin, ThankGod E. Ebenezer, Scott V. Edwards, Olivier Fedrigo, Paul Flicek, Giulio Formenti, Richard A. Gibbs, M. Thomas P. Gilbert, Melissa M. Goldstein, Jennifer Marshall Graves, Henry T. Greely, Igor V. Grigoriev, Kevin J. Hackett, Neil Hall, David Haussler, Kristofer M. Helgen, Carolyn J. Hogg, Sachiko Isobe, Kjetill Sigurd Jakobson, Axel Janke, Erich D. Jarvis, Warren E. Johnson, Steven J. M. Jones, Elinor K. Karlsson, Paul J. Kersey, Jin-Hyoung Kim, W. John Kress, Shigehiro Kuraku, Mara K. N. Lawniczak, James H. Leebens-Mack, Xueyan Li, Kerstin Lindblad-Toh, Xin Liu, Jose V. Lopez, Tomas Marques-Bonet, Sophie Mazard, Jonna A. K. Mazet, Camila J. Mazzoni, Eugene W. Myers, Rachel J. O'Neill, Sadye Paez, Hyun Park, Gene E. Robinson, Cristina Roquet, Oliver A. Ryder, Jamal S. M. Sabir, H. Bradley Shaffer, Timothy M. Shank, Jacob S. Sherkow, Pamela S. Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano-Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L. Wilson, Xun Xu, Huanming Yang, Anne D. Yoder, and Guojie Zhang

High-resolution post-release behaviour and recovery periods of two highly prized recreational sportfish: the blue marlin and sailfish, Ryan Logan, Jeremy Vaudo, Christopher G. Lowe, Bradley M. Wetherbee, and Mahmood Shivji

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The gut microbiome of exudivorous marmosets in the wild and captivity, Joanna Malukiewicz, Reed Cartwright, Jorge A. Dergam, Claudia S. Igayara, Sharon E. Kessler, Silvia B. Moreira, Leanne T. Nash, Patricia A. Nicola, Luiz C. M. Pereira, Alcides Pissinatti, Carlos R. Ruiz-Miranda, Andrew T. Ozga, Adriana A. Quirino, Christian Roos, Daniel L. Silva, Anne C. Stone, and Adriana D. Grativol

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Three complete mitochondrial genomes of shortfin mako sharks, Isurus oxyrinchus, from the Atlantic and Pacific Oceans, Marissa Mehlrose, Andrea Bernard, Kimberly A. Finnegan, Lauren E. Krausfeldt, Jose V. Lopez, and Mahmood Shivji

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A decade of GigaScience: A perspective on conservation genetics, Stephen James O'Brien

In Memoriam: Diane R. O’Brien (1945–2021): Transformative Managing Editor—Journal of Heredity, Stephen James O'Brien

The Nova Hydroculture Project: Bringing a Community of Science Technology, Engineering, Arts, and Math (STEAM) Learners Together to Grow a Unique Garden, Emily Schmitt Lavin, Varun Andrews, Espélancia Bell, Kenneth Bui, Aleessa Celestin, Vincent Do, Neha Joshi, Alexander Lavin, Carol Manikkuttiyil, Shashank Nutalapati, Alina Poothurail, Caroline Roy, Sanjana Vadlamudi, Shawn McQuaid, Michele Parsons, and Aarti Raja

Creating a Learning Model Where Students Practice the Scientific Process Through Protein Modeling, Emily F. Schmitt Lavin, Lyla Abbas, Aisha Abdool, Jordan Nichole Carreras, Jose Diaz, Seethal Doki, Rachel Harris, Heidi Hellenbrand, Pujita Julakanti, Brianna M. Lacasse, Sanjana Likki, Ryan Luib, Rathika Manikanda, Carol Manikkuttiyil, Saimi Reyes, Isadora Abreu, Vibha Sankavaram, Tassnime Sebaei, Chino Villanueva, and Arthur Sikora

Nitrosomonas supralitoralis sp. nov., an ammonia-oxidizing bacterium from beach sand in a supralittoral zone, Hidetoshi Urakawa, Gabrianna A. Andrews, Jose V. Lopez, Willm Martens-Habbena, Martin G. Klotz, and David A. Stahl

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Global collision-risk hotspots of marine traffic and the world’s largest fish, the whale shark, Freya C. Womersley, Nicolas E. Humphries, Nuno Queiroz, Marisa Vedor, Ivo da Costa, Miguel Furtado, John P. Tyminski, Katya Abrantes, Gonzalo Araujo, Steffen S. Bach, Adam Barnett, Michael L. Berumen, Sandra Bessudo Lion, Camrin D. Braun, Elizabeth Clingham, Jesse E. M. Cochran, Rafael de la Parra, Stella Diamant, Alistair D. M. Dove, Christine L. Dudgeon, Mark V. Erdmann, Eduardo Espinoza, Richard Fitzpatrick, Jaime González Cano, Jonathan R. Green, Hector M. Guzman, Royale Hardenstine, Abdi Hasan, Fábio H. V. Hazin, Alex R. Hearn, Robert E. Hueter, Mohammed Y. Jaidah, Jessica Labaja, Felipe Ladino, Bruno C. L. Macena, John J. Morris Jr., Bradley M. Norman, Cesar Peñaherrera-Palma, Simon J. Pierce, Lina Maria Quintero, Dení Ramírez-Macías, Samantha D. Reynolds, Anthony J. Richardson, David P. Robinson, Christoph A. Rohner, David R. L. Rowat, Marcus Sheaves, Mahmood Shivji, Abraham B. Sianipar, Gregory B. Skomal, German Soler, Ismail Syakurachman, Simon R. Thorrold, D. Harry Webb, Bradley M. Wetherbee, Timothy D. White, Tyler Clavelle, David A. Kroodsma, Michele Thums, Luciana C. Ferreira, Mark G. Meekan, Lucy M. Arrowsmith, Emily K. Lester, Megan M. Meyers, Lauren R. Peel, Ana M. M. Sequeira, Victor M. Eguiluz, Carlos M. Duarte, and David W. Sims

Submissions from 2021

A data-driven, high-throughput methodology to determine tissue-specific differentially methylated regions able to discriminate body fluids, Joana Antunes, Quentin Gauthier, Vanessa Aguiar-Pulido, George Duncan, and Bruce McCord

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Effects of COVID-19 on Global Healthcare Research and Management, Stephanie Autore and Santanu De

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Microscopic and Genetic Characterization of Bacterial Symbionts With Bioluminescent Potential in Pyrosoma atlanticum, Alexis Berger, Patricia L. Blackwelder, Tamara Frank, Tracey Sutton, Nina Pruzinsky, Natalie Slayden, and Jose V. Lopez

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Stable isotopes and community surveys reveal differential use of artificial and natural reefs by South Florida fishes, Christopher Blanar, Joseph R. Hornbeck, David Kerstetter, and Amy Hirons

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Sexual conflicts in sand tiger sharks Carcharias taurus (Rafinesque, 1810) in an artificial environment, Elizabeth Claus, Alan Henningsen, Mahmood Shivji, and Bradley Wetherbee

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Binding Partners of 14-3-3 (YWHA) Protein Isoforms among Mammalian Species, Tissues, and Developmental Stages, Taylor R. Covington and Santanu De

Holo-Transcriptome Sequences from the Tropical Marine Sponge Cinachyrella alloclada, Yvain Desplat, Jacob F. Warner, and Jose V. Lopez

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The role of glutamine in supporting gut health and neuropsychiatric factors, Brett J. Deters and Mir Saleem

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Carpe diem: winner and loser effects are constrained to same-day competitions in collegiate baseball, Omar Tonsi Eldakar, Natalie Buckwold, and Andrew C. Gallup

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Acetaminophen Potentiates Fear Processing: A Comparison Between Ancestral and Modern Threats, Andrew Gallup, Brianda Gagnon, Gillian Perry, and Omar T. Eldakar

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People that score high on psychopathic traits are less likely to yawn contagiously, Andrew Gallup, Mariska E. Kret, Omar T. Eldakar, Julia Folz, and Jorg J. M. Massen

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ddPCR Reveals SARS-CoV-2 Variants in Florida Wastewater, Eben Gering, Jacob Colbert, Sarah Schmedes, George Duncan, Jose V. Lopez, Jessy Motes, James Weiss, Taj Azarian, Omer Tekin, and Jason Blanton

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Toxoplasma gondii infections are associated with costly boldness toward felids in a wild host, Eben Gering, Zachary M. Laubach, Patty Sue D. Weber, Gisela Soboll Hussey, Kenna D. S. Lehmann, Tracy M. Montgomery, Julie W. Turner, Wei Perng, Malit O. Pioon, Kay E. Holekamp, and Thomas Getty

The genital microbiome and its potential for detecting sexual assault, Mirna Ghemrawi, Andrea Ramírez Torres, George Duncan, Rita Colwell, Manoj Dadlani, and Bruce McCord

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Effects of COVID-19 on Global Research in STEM, Michelle Hoang and Santanu De

BIO-INSPIRED MAGNETIC BEADS FOR ISOLATION OF SPERM FROM HETEROGENOUS SAMPLES IN FORENSIC APPLICATIONS, Fatih Inci, Merve Goksin Karaaslan, Rakhi Gupta, Anirudh Avadhani, Mehmet Giray Ogut, Ekin Erin Atila, George Duncan, Leonard Klevan, and Utkan Demirci

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Analysis of global human gut metagenomes shows that metabolic resilience potential for short-chain fatty acid production is strongly influenced by lifestyle, David K. Jacobson, Tanvi P. Honap, Andrew T. Ozga, Nicolas Meda, Thérèse S. Kagoné, Hélène Carabin, Paul Spicer, Raul Y. Tito, Alexandra J. Obregon-Tito, Luis Marin Reyes, Luzmila Troncoso-Corzo, Emilio Guija-Poma, and Krithivasan Sankaranarayanan

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Bacterial cooperation through horizontal gene transfer, Isaiah Paolo A. Lee, Omar T. Eldakar, J. Peter Gogarten, and Cheryl P. Andam

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Minor Changes with Large Implications: Modeling Amino Acid Mutations in SARS-CoV Monoclonal Antibodies (80R and 362) Towards the Design of More Universal Antibodies, Carol Manikkuttiyil, Feza Abbas, Lyla Abbas, Carolina Alzamora, Matthew Hunt, Pujita Julakanti, Sanjana Likki, Christo Manikkuttiyil, Emily Schmitt Lavin, and Arthur Sikora

Commentary: Unbiasing Genome-Based Analyses of Selection: An Example Using Iconic Shark Species, Nicholas J. Marra, Michael J. Stanhope, Nathaniel K. Jue, Vincent P. Richards, Stephen J. O'Brien, Agostinho Antunes, and Mahmood S. Shivji

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The role of Neuropilin-1 in COVID-19, Bindu Mayi, Jillian A. Leibowitz, Arden T. Woods, Katherine A. Ammon, Alphonse E. Liu, and Aarti Raja

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A Crucial Role for Antimicrobial Stewardship in the Midst of COVID-19, Bindu Mayi, Manda Mainville, Rida Altaf, Michelle Lanspa, Sheel Vaniawala, Thomas A. Ollerhead, and Aarti Raja

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A Crucial Role for Antimicrobial Stewardship in the Midst of COVID-19, Bindu S. Mayi, Manda Mainville, Rida Altaf, Michelle Lanspa, Sheel Vaniawala, Thomas A. Ollerhead, and Aarti Raja

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The Aquatic Symbiosis Genomics Project: probing the evolution of symbiosis across the tree of life, Victoria McKenna, John M. Archibald, Roxanne Beinart, Michael N. Dawson, Ute Hentschel, Patrick J. Keeling, Jose V. Lopez, José M. Martín-Durán, Jillian M. Petersen, Julia D. Sigwart, Oleg Simakov, Kelly R. Sutherland, Michael Sweet, Nick Talbot, Anne W. Thompson, Sara Bender, Peter W. Harrison, Jeena Rajan, Guy Cochrane, Matthew Berriman, Mara Lawniczak, and Mark Blaxter

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Genetic, Social and Behavioral Risk Factors Associated with Alzheimer’s Disease, Vineela Nagamalla, Jay Patel, and Mir Saleem

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Dental calculus as a proxy for animal microbiomes, Andrew T. Ozga and Claudio Ottoni

African and Asian leopards are highly differentiated at the genomic level, Johanna L.A. Paijmans, Axel Barlow, Matthew S. Becker, James A. Cahill, Joerns Fickel, Daniel W.G. Förster, Katrin Gries, Stefanie Hartmann, Rasmus Worsøe Havmøller, Kirstin Henneberger, Christian Kern, Andrew C. Kitchener, Eline D. Lorenzen, Frieder Mayer, Stephen James O'Brien, Johanna von Seth, Mikkel-Holder S. Sinding, Göran Spong, Olga Uphyrkina, Bettina Wachter, Michael V. Westbury, Love Dalén, Jong Bhak, Andrea Manica, and Michael Hofreiter

Dire wolves were the last of an ancient New World canid lineage, Angela Perri, Kieren J. Mitchell, Alice Mouton, Sandra Alvarez-Carretero, Ardern Hulme-Beaman, Jaimes Haile, Alexandra Jamieson, Julie Meachen, Audrey T. Lin, Blaine W. Schubert, Carly Ameen, Ekaterina E. Antipina, Pere Bover, Selina Brace, Alberto Carmagnini, Christian Carøe, Jose A. Samaniego Castruita, James C. Chatters, Keith Dobney, Mario dos Reis, Allowen Evin, Phillippe Gaubert, Shyam Gopalakrishnan, Graham Gower, Holly Heiniger, Kristofer M. Helgen, Josh Kapp, Pavel A. Kosintsev, Anna Linderholm, Andrew T. Ozga, Samantha Presslee, Alexander T. Salis, Nedda F. Saremi, Colin Shew, Katherine Skerry, Dmitry E. Taranenko, Mary Thompson, Mikhail V. Sablin, Yaroslav V. Kuzmin, Matthew J. Collins, Mikkel-Holger S. Sinding, M. Thomas P. Gilbert, Anne C. Stone, Beth Shapiro, Blaire Van Valkenburgh, Robert K. Wayne, Greger Larson, Alan Cooper, and Laurent A. F. Frantz

Reply to: Shark mortality cannot be assessed by fishery overlap alone, Nuno Queiroz, Nicolas E. Humphries, Ana Couto, Marisa Vedor, Ivo da Costa, Ana M. M. Sequeira, Gonzalo Mucientes, António M. Santos, Francisco J. Abascal, Debra L. Abercrombie, Katya Abrantes, David Acuña-Marrero, André S. Afonso, Pedro Afonso, Darrell Anders, Gonzalo Araujo, Randall Arauz, Pascal Bach, Adam Barnett, Diego Bernal, Michael L. Berumen, Sandra Bessudo Lion, Natalia P. A. Bezerra, Antonin V. Blaison, Barbara A. Block, Mark E. Bond, Ramon Bonfil, Russell W. Bradford, Camrin D. Braun, Edward J. Brooks, Annabelle Brooks, Judith Brown, Barry D. Bruce, Michael E. Byrne, Steven E. Campana, Aaron B. Carlisle, Demian D. Chapman, Taylor K. Chapple, John Chisholm, Christopher R. Clarke, Eric G. Clua, Jesse E. M. Cochran, Estelle C. Crochelet, Laurent Dagorn, Ryan Daly, Daniel Devia Cortés, Thomas K. Doyle, Michael Drew, Clinton A. J. Duffy, Thor Erikson, Eduardo Espinoza, Luciana C. Ferreira, Francesco Ferretti, John D. Filmalter, G. Chris Fischer, Richard Fitzpatrick, Jorge Fontes, Fabien Forget, Mark Fowler, Malcolm P. Francis, Austin J. Gallagher, Enrico Gennari, Simon D. Goldsworthy, Matthew J. Gollock, Jonathan R. Green, Johan A. Gustafson, Tristan L. Guttridge, Hector M. Guzman, Neil Hammerschlag, Luke Harman, Fábio H. V. Hazin, Matthew Heard, Alex R. Hearn, John C. Holdsworth, Bonnie J. Holmes, Lucy A. Howey, Mauricio Hoyos, Robert E. Hueter, Nigel E. Hussey, Charlie Huveneers, Dylan T. Irion, David M. P. Jacoby, Oliver J. D. Jewell, Ryan Johnson, Lance K. B. Jordan, Warren Joyce, Clare A. Keating Daly, James T. Ketchum, A. Peter Klimley, Alison A. Kock, Pieter Koen, Felipe Ladino, Fernanda O. Lana, James S. E. Lea, Fiona Llewellyn, Warrick S. Lyon, Anna MacDonnell, Bruno C. L. Macena, Heather Marshall, Jaime D. McAllister, Michael A. Meÿer, John J. Morris, Emily R. Nelson, Yannis P. Papastamatiou, Cesar Peñaherrera-Palma, Simon J. Pierce, Francois Poisson, Lina Maria Quintero, Andrew J. Richardson, Paul J. Rogers, Christoph A. Rohner, David R. L. Rowat, Melita Samoilys, Jayson M. Semmens, Marcus Sheaves, George Shillinger, Mahmood S. Shivji, Sarika Singh, Gregory B. Skomal, Malcolm J. Smale, Laurenne B. Snyders, German Soler, Marc Soria, Kilian M. Stehfest, Simon R. Thorrold, Mariana T. Tolotti, Alison Towner, Paulo Travassos, John P. Tyminski, Frederic Vandeperre, Jeremy J. Vaudo, Yuuki Y. Watanabe, Sam B. Weber, Bradley M. Wetherbee, Timothy D. White, Sean Williams, Patricia M. Zárate, Robert Harcourt, Graeme C. Hays, Mark G. Meekan, Michele Thums, Xabier Irigoien, Victor M. Eguiluz, Carlos M. Duarte, Lara L. Sousa, Samantha J. Simpson, and Emily J. Southall

Reply to: Caution over the use of ecological big data for conservation, Nuno Queiroz, Nicolas E. Humphries, Ana Couto, Marisa Vedor, Ivo da Costa, Ana M. M. Sequeira, Gonzalo Mucientes, António M. Santos, Francisco J. Abascal, Debra L. Abercrombie, Katya Abrantes, David Acuña-Marrero, André S. Afonso, Pedro Afonso, Darrell Anders, Gonzalo Araujo, Randall Arauz, Pascal Bach, Adam Barnett, Diego Bernal, Michael L. Berumen, Sandra Bessudo Lion, Natalia P. A. Bezerra, Antonin V. Blaison, Barbara A. Block, Mark E. Bond, Ramon Bonfil, Camrin D. Braun, Edward J. Brooks, Annabelle Brooks, Judith Brown, Michael E. Byrne, Steven E. Campana, Aaron B. Carlisle, Demian D. Chapman, Taylor K. Chapple, John Chisholm, Christopher R. Clarke, Eric G. Clua, Jesse E. M. Cochran, Estelle C. Crochelet, Laurent Dagorn, Ryan Daly, Daniel Devia Cortés, Thomas K. Doyle, Michael Drew, Clinton A. J. Duffy, Thor Erikson, Eduardo Espinoza, Luciana C. Ferreira, Francesco Ferretti, John D. Filmalter, G Chris Fischer, Richard Fitzpatrick, Jorge Fontes, Fabien Forget, Mark Fowler, Malcolm P. Francis, Austin J. Gallagher, Enrico Gennari, Simon D. Goldsworthy, Matthew J. Gollock, Jonathan R. Green, Johan A. Gustafson, Tristan L. Guttridge, Hector M. Guzman, Neil Hammerschlag, Luke Harman, Fábio H. V. Hazin, Matthew Heard, Alex R. Hearn, John C. Holdsworth, Bonnie J. Holmes, Lucy A. Howey, Mauricio Hoyos, Robert E. Hueter, Nigel E. Hussey, Charlie Huveneers, Dylan T. Irion, David M. P. Jacoby, Oliver J. D. Jewell, Ryan Johnson, Lance K. B. Jordan, Warren Joyce, Clare A. Keating Daly, James T. Ketchum, A Peter Klimley, Alison A. Kock, Pieter Koen, Felipe Ladino, Fernanda O. Lana, James S. E. Lea, Fiona Llewellyn, Warrick S. Lyon, Anna MacDonnell, Bruno C. L. Macena, Heather Marshall, Jaime D. McAllister, Michael A. Meÿer, John J. Morris, Emily R. Nelson, Yannis P. Papastamatiou, Cesar Peñaherrera-Palma, Simon J. Pierce, Francois Poisson, Lina Maria Quintero, Andrew J. Richardson, Paul J. Rogers, Christoph A. Rohner, David R. L. Rowat, Melita Samoilys, Jayson M. Semmens, Marcus Sheaves, George Shillinger, Mahmood S. Shivji, Sarika Singh, Gregory B. Skomal, Malcolm J. Smale, Laurenne B. Snyders, German Soler, Marc Soria, Kilian M. Stehfest, Simon R. Thorrold, Mariana T. Tolotti, Alison Towner, Paulo Travassos, John P. Tyminski, Frederic Vandeperre, Jeremy J. Vaudo, Yuuki Y. Watanabe, Sam B. Weber, Bradley M. Wetherbee, Timothy D. White, Sean Williams, Patricia M. Zárate, Robert Harcourt, Graeme C. Hays, Mark G. Meekan, Michele Thums, Xabier Irigoien, Victor M. Eguiluz, Carlos M. Duarte, Lara L. Sousa, Samantha J. Simpson, Emily J. Southall, and David W. Sims

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Periodically Disturbing the Spatial Structure of Biofilms Can Affect the Production of an Essential Virulence Factor in Pseudomonas aeruginosa, Rebecca J. Quinn, Ivana Barraza, Laura García-Diéguez, Camryn Pajon, Lauren E. Krausfeldt, Kerollos Ibrahim, Laura A. Enzinna, Morgan E. Thorn, Omar Tonsi Eldakar, Travis J. A. Craddock, and Robert P. Smith

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Metaplasia of respiratory and digestive tissues in the Eastern oyster Crassostrea virginica associated with the Deepwater Horizon oil spill, Deanne Roopnarine, Peter D. Roopnarine, Laurie C. Anderson, Ji Hae Hwang, and Swati Patel

Evidence of historical isolation and genetic structuring among broadnose sevengill sharks (Notorynchus cepedianus) from the world’s major oceanic regions, Alicia C. J. Schmidt-Roach, Christine C. Bruels, Adam Barnett, Adam D. Miller, Craig D. H. Sherman, David A. Ebert, Sebastian Schmidt-Roach, Charlene da Silva, Christopher G. Wilke, Craig Thorburn, Jeffrey C. Mangel, Juan Manuel Ezcurra, Alejo Irigoyen, Andrés Javier Jaureguizar, Matias Braccini, Joanna Alfaro-Shigueto, Clinton Duffy, and Mahmood Shivji

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Genome-wide association study reveals genetic variants associated with HIV-1C infection in a Botswana study population, Andrey Shevchenko, Daria V. Zhernakova, Sergey Malov, Aleksey Komissarov, Sofia Kolchanova, Gaik Tamazian, Alexey Antonik, Nikolay Cherkasov, Sergey Kliver, Anastasiia Turenko, Mikhail Rotkevich, Igor Evsyukov, David Vlahov, Prisca K. Thami, Simani Gaseitsiwe, Vladimir Novitsky, Myron Essex, and Stephen James O'Brien

Come together: calibration of tiger shark (Galeocerdo cuvier) microsatellite databases for investigating global population structure and assignment of historical specimens, Matilde Sort, Alice Manuzzi, Belén Jiménez-Mena, J R. Ovenden, B J. Holmes, Andrea Bernard, Mahmood S. Shivji, D Meldrup, Mike B. Bennett, and Einar E. Nielsen

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Microbiome Analyses Demonstrate Specific Communities Within Five Shark Species, Rachael Storo, Cole Easson, Mahmood S. Shivji, and Jose V. Lopez

Diel vertical movements of a coastal predator, the roosterfish (Nematistius pectoralis), Jeremy Vaudo, Ryan K. Logan, Bradley Wetherbee, Jessica C. Harvey, Guy C. McN. Harvey, and Mahmood Shivji

Life in the margins: host-parasite relationships in ecological edges, Elizabeth M. Warburton and Christopher A. Blanar

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Genome-wide Association Study Identifies New Loci Associated With Risk Of HBV Infection And Disease Progression, Zheng Zeng, Liu Hankui, Xu Huifang, Lu Haiying, Yu Yanyan, Xu Xiaoyuan, Yu Min, Zhang Tao, Tian Xiulan, Xi Hongli, Guan Liping, Zhang Jianguo, and Stephen James O'Brien

Submissions from 2020

Decoding the Molecular Ties between Cerebrovascular Disease and Alzheimer’s, Simran Agarwal and Mir Saleem

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Academic Ecosystems Must Evolve to Support a Sustainable Postdoc Workforce, Murielle Ålund, Nathan Emery, Benjamin J. M. Jarrett, Kirsty J. MacLeod, Helen F. McCreery, Nadya Mamoozadeh, John G. Phillips, Jory Schossau, Andrew W. Thompson, Alexa R. Warwick, Kelsey M. Yule, Erin R. Zylstra, and Eben Gering

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Mapping of Diabetes Susceptibility Loci in a Domestic Cat Breed with an Unusually High Incidence of Diabetes Mellitus, Lois Balmer, Caroline Ann O'Leary, Marilyn Menotti-Raymond, Victor David, Stephen James O'Brien, Belinda Penglis, Sher Hendrickson, Mia Reeves-Johnson, Susan Gottlieb, Linda Fleeman, Dianne Vankan, Jacquie Rand, and Grant Morahan

Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens, Ross Barnett, Michael V. Westbury, Marcela Sandoval-Velasco, Filipe Garrett Vieira, Sungwon Jeon, Grant Zazula, Michael D. Martin, Simon Y.W. Ho, Niklas Mather, Shyam Gopalakrishnan, Jazmín Ramos-Madrigal, Marc de Manuel, M. Lisandra Zepeda-Mendoza, Agostinho Antunes, Aldo Carmona Baez, Binia De Cahsan, Greger Larson, Stephen J. O'Brien, Eduardo Eizirik, Warren E. Johnson, Klaus Peter Koepfli, Andreas Wilting, Jörns Fickel, Love Dalén, Eline D. Lorenzen, Tomas Marques-Bonet, Anders J. Hansen, Guojie Zhang, and Jong Bhak

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Karyotype Evolution in 10 Pinniped Species: Variability of Heterochromatin versus High Conservatism of Euchromatin as Revealed by Comparative Molecular Cytogenetics, Violetta R. Beklemisheva, Polina L. Perelman, Natalya A. Lemskaya, Anastasiya A. Proskuryakova, Natalya A. Serdyukova, Vladimir N. Burkanov, Maksim B. Gorshunov, Oliver A. Ryder, Mary Thompson, Gina Lento, Stephen James O'Brien, and Alexander S. Graphodatsky

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Oceanographic Structure and Light Levels Drive Patterns of Sound Scattering Layers in a Low-Latitude Oceanic System, Kevin M. Boswell, Marta D'Elia, Matthew Johnston, John A. Mohan, Joseph D. Warren, R. J. David Wells, and Tracey Sutton

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Ultracontinuous single haplotype genome assemblies for the domestic cat (Felis catus) and Asian leopard cat (Prionailurus bengalensis), Kevin R. Bredemeyer, Andrew J. Harris, Gang Li, Le Zhao, Nicole M. Foley, Melody E. Roelke-Parker, Stephen James O'Brien, Leslie A. Lyons, Wesley C. Warren, and William J. Murphy

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Are Pangolins Scapegoats of the COVID-19 Outbreak-CoV Transmission and Pathology Evidence?, Siew Woh Choo, Jinfeng Zhou, Xuechen Tian, Siyuan Zhang, Shen Qiang, Stephen James O'Brien, Ka Yun Tan, Sara Platto, Klaus-Peter Koepfli, Agostinho Antunes, and Frankie Thomas Sitam

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The evolutionary history of extinct and living lions, Marc de Manuel, Ross Barnett, Marcela Sandoval-Velasco, Nobuyuki Yamaguchi, Filipe Garrett Vieira, M. Lisandra Zepeda Mendoza, Shiping Liu, Michael D. Martin, Mikkel Holger S. Sinding, Sarah S.T. Mak, Christian Carøe, Shanlin Liu, Chunxue Guo, Jiao Zheng, Grant Zazula, Gennady Baryshnikov, Eduardo Eizirik, Klaus Peter Koepfli, Warren E. Johnson, Agostinho Antunes, Thomas Sicheritz-Ponten, Shyam Gopalakrishnan, Greger Larson, Huanming Yang, Stephen J. O'Brien, Anders J. Hansen, Guojie Zhang, Tomas Marques-Bonet, and M. Thomas P. Gilbert

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Strategies of Plant Biotechnology to Meet the Increasing Demand of Food and Nutrition in India, Santanu De

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The 14-3-3 (YWHA) Proteins in Mammalian Reproduction, Santanu De

Impact of Science Mobile Applications on Interest and Learning Among Undergraduate Science Students, Santanu De and Vanaja Nethi

A Confirmatory Test for Sperm in Sexual Assault Samples Using a Microfluidic Integrated Cell Phone Imaging System, Shreya Deshmukh, Fatih Inci, Merve Goksin Karaaslan, Mehmet Giray Ogut, Derek Duncan, Leonard Klevan, George Duncan, and Utkan Demirci

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Host Population Genetics and Biogeography Structure the Microbiome of the Sponge Cliona delitrix, Cole Easson, Andia Chaves-Fonnegra, Robert W. Thacker, and Jose Lopez

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Combined eDNA and Acoustic Analysis Reflects Diel Vertical Migration of Mixed Consortia in the Gulf of Mexico, Cole G. Easson, Kevin M. Boswell, Nicholas Tucker, Joseph D. Warren, and Jose V. Lopez

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New Gene Variants Associated with the Risk of Chronic HBV Infection, Mengjie Fan, Jing Wang, Sa Wang, Tengyan Li, Hong Pan, Hankui Liu, Huifang Xu, Daria V. Zhernakova, Stephen J. O’Brien, Zhenru Feng, Le Chang, Erhei Dai, Jianhua Lu, Hongli Xi, Yanyan Yu, Jianguo Zhang, Binbin Wang, and Zheng Zeng

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Acetaminophen Does Not Alter the Early Processing of Emotional Facial Expressions: An Eye-tracking Study, Andrew C. Gallup, Brianda K. L. Gagnon, Bruna Rosic, and Omar T. Eldakar

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Insights Into Insular Isolation of the Bull Shark, Carcharhinus leucas (Müller and Henle, 1839), in Fijian Waters, Kerstin B J Glaus, Sharon A. Appleyard, Brian Stockwell, Juerg M. Brunnschweiler, Mahmood S. Shivji, Eric Clua, Amandine D. Marie, and Ciro Rico

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Effects of COVID-19 on Education in Healthcare and STEM, Jessica Hallett and Santanu De

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Detecting Personal Microbiota Signatures at Artificial Crime Scenes, Jarrad T. Hampton-Marcell, Peter Larsen, Tifani Anton, Lauren Cralle, Naseer Sangwan, Simon Lax, Neil Gottel, Mariana Salas-Garcia, Candace Young, George Duncan, Jose Lopez, and Jack A. Gilbert

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Seasonal patterns in stable isotope and fatty acid profiles of southern stingrays (Hypanus americana) at Stingray City Sandbar, Grand Cayman, Lisa A. Hoopes, Tonya M. Clauss, Nicole E. Browning, Alexa J. Delaune, Bradley M. Wetherbee, Mahmood Shivji, Jessica C. Harvey, and Guy C.M. Harvey

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HalSynteny: A fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments, Ksenia Krasheninnikova, Mark Diekhans, Joel Armstrong, Aleksei Dievskii, Benedict Paten, and Stephen O'Brien

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Spatio-Temporal Genetic Tagging of a Cosmopolitan Planktivorous Shark Provides Insight to Gene Flow, Temporal Variation and Site-Specific Re-Encounters, Lilian Lieber, Graham Hall, Jackie Hall, Simon Berrow, Emmett Johnston, Chrysoula Gubili, Jane Sarginson, Malcolm Francis, Clinton Duffy, Sabine P. Wintner, Philip D. Doherty, Brendan J. Godley, Lucy A. Hawkes, Matthew J. Witt, Suzanne M. Henderson, Eleonora de Sabata, Mahmood S. Shivji, Deborah A. Dawson, David W. Sims, Catherine S. Jones, and Leslie R. Noble

SARS-CoV-2 and COVID-19: A Brief Review for Family Physicians, Bindu Mayi, Aarti Raja, Gina Foster-Moumoutjis, Pamela Moran-Walcutt, Mayur Parmar, Patricia Rose, and Shahnaz Fatteh

Microbial Community Shift Under Exposure of Dredged Sediments From a Eutrophic Bay, Juliana R. Nascimento, Cole Easson, Diogo de A. Jurelevicius, Jose V. Lopez, Edison D. Bidone, and Elisamara Sabadini-Santos

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GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data, Ekaterina Noskova, Vladimir Ulyantsev, Klaus Peter Koepfli, Stephen J. O'brien, and Pavel Dobrynin

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Urine as a High-Quality Source of Host Genomic DNA from Wild Populations, Andrew T. Ozga, Timothy H. Webster, Ian C. Gilby, Melissa A. Wilson, Rebecca Nockerts, Michael L. Wilson, Anne Pusey, Yingying Li, Beatrice H. Hahn, and Anne C. Stone

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The complete mitochondrial genome of a gray reef shark, Carcharhinus amblyrhynchos (Carcharhiniformes: Carcharhinidae), from the Western Indian Ocean, Ela Patel, Andrea Bernard, Marissa Mehlrose, Sydney Harned, Kimberly A. Finnegan, Cristin K. Fitzpatrick, James S. Lea, and Mahmood S. Shivji

Restricted Connectivity and Population Genetic Fragility in a Globally Endangered Hammerhead Shark, D. Pinhal, Rodrigo R. Domingues, Christine C. Bruels, Bruno L. S. Ferrette, Otto B. F. Gadig, Mahmood S. Shivji, and C. Martins

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Draft Genome of Bugula neritina, a Colonial Animal Packing Powerful Symbionts and Potential Medicines, Mikhail Rayko, Aleksey Komissarov, Jason C. Kwan, Grace Lim-Fong, Adelaide C. Rhodes, Sergey Kliver, Polina Kuchur, Stephen James O'Brien, and Jose Lopez

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Comparative Population Genomics and Biophysical Modeling of Shrimp Migration in the Gulf of Mexico Reveals Current-Mediated Connectivity, Laura Timm, Lys M. Isma, Matthew Johnston, and Heather D. Bracken-Grissom

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Comparative Population Genomics and Biophysical Modeling of Shrimp Migration in the Gulf of Mexico Reveals Current-Mediated Connectivity, Laura Timm, Lys M. Isma, Matthew Johnston, and Heather D. Bracken-Grissom

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Complete genome sequence of microcystis aeruginosa FD4, isolated from a subtropical river in Southwest Florida, Hidetoshi Urakawa, Taylor L. Hancock, Jacob H. Steele, Elizabeth K. Dahedl, Haruka E. Urakawa, Luka K. Ndungu, Lauren E. Krausfeldt, Barry H. Rosen, and Jose V. Lopez

A Potential Tradeoff Between Feeding Rate and Aversive Learning Determines Intoxication in a Caenorhabditis elegans Host-Pathogen System, Pallavi Velagapudi, Rachel Ghoubrial, Ratnavi Shah, Helana Ghali, Meghan Haas, Krunal S. Patel, Ashleigh Riddell, Christopher Blanar, and Robert Smith

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Impact of pyriproxyfen on virus behavior: implications for pesticide-induced virulence and mechanism of transmission, Paula A. Faria Waziry, Aarti Raja, Chloe Salmon, Nathalia Aldana, Sruthi Damodar, Andre Rinaldi Fukushima, and Bindu S. Mayi

Diet and Parasites of a Mesopelagic Fish Assemblage in the Gulf of Mexico, Matthew S. Woodstock, Christopher Blanar, and Tracey Sutton

Match statistics for sequence‐based alleles in profiles from forensic pcr‐mps kits, Brian Young, Michael Marciano, Karin Crenshaw, George Duncan, Luigi Armogida, and Bruce McCord

Genome-wide sequence analyses of ethnic populations across Russia, Daria V. Zhernakova, Vladimir Brukhin, Sergey Malov, Taras K. Oleksyk, Klaus Peter Koepfli, Anna Zhuk, Pavel Dobrynin, Sergei Kliver, Nikolay Cherkasov, Gaik Tamazian, Mikhail Rotkevich, Ksenia Krasheninnikova, Igor Evsyukov, Sviatoslav Sidorov, Anna Gorbunova, Ekaterina Chernyaeva, Andrey Shevchenko, Sofia Kolchanova, Alexei Komissarov, Serguei Simonov, Alexey Antonik, Anton Logachev, Dmitrii E. Polev, Olga A. Pavlova, Andrey S. Glotov, Vladimir Ulantsev, Ekaterina Noskova, Tatyana K. Davydova, and Tatyana M. Sivtseva

Submissions from 2019

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"The dead shall be raised": Multidisciplinary analysis of human skeletons reveals complexity in 19th century immigrant socioeconomic history and identity in New Haven, Connecticut, Gary P. Aronsen, Lars Fehren-Schmitz, John Krigbaum, George D. Kamenov, Gerald J. Conlogue, Christina Warinner, Andrew T. Ozga, Krithivasan Sankaranarayanan, Anthony Griego, Daniel W. DeLuca, Howard T. Eckels, Romuald K. Byczkiewicz, Tania Grgurich, Natalie A. Pelletier, Sarah A. Brownlee, Ana Marichal, Kylie Williamson, Yukiko Tonoike, and Nicholas F. Bellantoni

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Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment, Lydia Baker, Lindsay L. Freed, Cole Easson, Jose Lopez, Dante Fenolio, Tracey Sutton, Spencer Nyholm, and Tory Hendry